Wall clock time and date at job start Sat Apr 11 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48497 * 109.47247 * 240.00615 * 3 2 1 5 5 H 1.48502 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46770 * 120.00117 * 3 2 1 7 7 C 1.37876 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47204 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.46950 * 180.02562 * 11 10 9 13 13 O 1.42104 * 109.47298 * 63.61122 * 12 11 10 14 14 C 1.81399 * 102.99894 * 179.97438 * 12 11 10 15 15 C 1.50703 * 109.47147 * 179.97438 * 14 12 11 16 16 N 1.31130 * 126.54877 * 90.00507 * 15 14 12 17 17 C 1.34496 * 105.61419 * 179.97438 * 16 15 14 18 18 C 1.50698 * 126.29175 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46872 * 89.99669 * 18 17 16 20 20 F 1.39904 * 109.47141 * 60.00406 * 19 18 17 21 21 F 1.39898 * 109.47289 * 180.02562 * 19 18 17 22 22 F 1.39897 * 109.47585 * 300.00600 * 19 18 17 23 23 N 1.29951 * 107.42513 * 359.97438 * 17 16 15 24 24 O 1.21302 * 110.24957 * 359.70320 * 23 17 16 25 25 H 0.96999 * 119.99728 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47439 * 60.00324 * 9 7 2 27 27 H 1.09002 * 109.47338 * 299.99929 * 9 7 2 28 28 H 1.08998 * 109.46685 * 59.99887 * 10 9 7 29 29 H 1.09002 * 109.46983 * 300.00171 * 10 9 7 30 30 H 1.09002 * 109.46725 * 60.00091 * 11 10 9 31 31 H 1.08998 * 109.46794 * 299.99916 * 11 10 9 32 32 H 1.09001 * 109.47190 * 299.99732 * 14 12 11 33 33 H 1.09004 * 109.47089 * 59.99865 * 14 12 11 34 34 H 1.08999 * 109.47602 * 209.99851 * 18 17 16 35 35 H 1.08997 * 109.46700 * 330.00201 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4800 -4.9872 -0.0025 12 16 2.6587 -6.3659 -0.0032 13 8 3.4192 -6.3397 1.1969 14 6 1.5804 -7.8246 -0.0031 15 6 2.4243 -9.0732 -0.0044 16 7 2.8623 -9.7207 1.0484 17 6 3.5650 -10.7615 0.5668 18 6 4.2753 -11.8116 1.3815 19 6 3.3204 -12.9744 1.6587 20 9 2.8991 -13.5310 0.4462 21 9 3.9796 -13.9490 2.4155 22 9 2.2091 -12.5065 2.3680 23 7 3.5188 -10.6954 -0.7302 24 8 2.8632 -9.7362 -1.0786 25 1 -0.4850 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8897 28 1 2.8724 -3.6048 0.8877 29 1 2.8710 -3.6041 -0.8923 30 1 0.8530 -5.0442 -0.8923 31 1 0.8538 -5.0455 0.8877 32 1 0.9516 -7.8116 0.8871 33 1 0.9508 -7.8111 -0.8929 34 1 5.1411 -12.1763 0.8288 35 1 4.6035 -11.3780 2.3262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318851019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:33 Heat of formation + Delta-G solvation = -162.797222 kcal Electronic energy + Delta-G solvation = -24296.672179 eV Core-core repulsion = 19815.584969 eV Total energy + Delta-G solvation = -4481.087210 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.070 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.28842 -48.78911 -48.77738 -46.87921 -37.51985 -36.95707 -36.26895 -35.28915 -33.99094 -32.34889 -30.18214 -29.33064 -25.97648 -25.42402 -24.58437 -22.87910 -21.99188 -19.89045 -19.72451 -19.52733 -19.03261 -18.62474 -18.24382 -18.17644 -16.71309 -16.65831 -16.28018 -16.13232 -15.84482 -15.68222 -15.31549 -15.19380 -15.16086 -14.92160 -14.91043 -14.70988 -14.32666 -14.08577 -13.89544 -13.75528 -13.68222 -13.26766 -13.00927 -12.80336 -12.65559 -12.51393 -12.48154 -12.31617 -11.98114 -11.56055 -11.44837 -11.24993 -10.69049 -10.52754 -9.31468 -8.18611 -6.29107 -0.33192 0.36450 0.90987 1.41970 1.44310 1.48168 1.52070 1.60752 1.65668 2.10368 2.42590 2.59313 2.62724 2.75781 2.90694 3.10029 3.14747 3.59852 3.97256 4.06918 4.11489 4.17641 4.25034 4.35696 4.67099 4.68530 4.71774 4.92020 5.23043 5.24389 5.54146 5.75802 5.88041 6.26634 6.85991 6.88208 7.40065 8.92355 Molecular weight = 326.07amu Principal moments of inertia in cm(-1) A = 0.042532 B = 0.001933 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.165490 B =14480.764065 C =14545.282539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.092 4.092 11 C -0.435 4.435 12 S 1.321 4.679 13 O -0.894 6.894 14 C -0.372 4.372 15 C 0.212 3.788 16 N -0.497 5.497 17 C 0.145 3.855 18 C -0.071 4.071 19 C 0.462 3.538 20 F -0.186 7.186 21 F -0.171 7.171 22 F -0.188 7.188 23 N -0.370 5.370 24 O 0.106 5.894 25 H 0.263 0.737 26 H 0.012 0.988 27 H -0.018 1.018 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.159 0.841 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.212 0.788 34 H 0.168 0.832 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -26.582 -4.291 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.573 4.573 12 S 1.518 4.482 13 O -0.889 6.889 14 C -0.506 4.506 15 C -0.008 4.008 16 N -0.231 5.231 17 C -0.128 4.128 18 C -0.110 4.110 19 C 0.407 3.593 20 F -0.168 7.168 21 F -0.153 7.153 22 F -0.170 7.170 23 N -0.074 5.074 24 O 0.042 5.958 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.000 1.000 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.177 0.823 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.229 0.771 34 H 0.186 0.814 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.697 -27.207 -4.324 28.604 hybrid contribution -1.579 0.981 2.257 2.924 sum 6.118 -26.227 -2.066 27.010 Atomic orbital electron populations 1.70069 1.07641 1.27778 1.51681 1.25941 0.95785 1.03222 0.94846 0.85566 0.78347 0.78378 0.79177 1.18584 1.20928 1.19897 1.21749 0.93666 0.92657 1.50507 0.92229 1.19027 0.94347 0.92454 0.95347 1.21140 0.98106 0.92435 1.01375 1.27656 1.11835 1.08627 1.09192 1.70641 0.84884 0.83818 1.08856 1.93049 1.58255 1.84524 1.53071 1.26745 1.08753 1.00958 1.14151 1.27925 0.95879 0.96733 0.80269 1.71996 1.14397 1.06825 1.29925 1.25345 1.00870 0.97910 0.88653 1.21293 0.96799 0.88208 1.04656 1.20298 0.80726 0.84144 0.74114 1.93219 1.91157 1.87107 1.45272 1.93229 1.80386 1.65140 1.76521 1.93227 1.56073 1.88429 1.79243 1.74639 1.12772 1.04862 1.15128 1.85311 1.47837 1.27758 1.34906 0.92800 0.96938 0.99957 0.95039 0.89474 0.82329 0.90737 0.84919 0.77069 0.81381 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.37 5.16 30.60 0.16 -3.21 16 11 C -0.43 -10.71 5.92 71.98 0.43 -10.28 16 12 S 1.32 25.29 13.14 -56.49 -0.74 24.55 16 13 O -0.89 -30.76 18.14 -148.98 -2.70 -33.46 16 14 C -0.37 -4.82 6.55 71.24 0.47 -4.35 16 15 C 0.21 4.08 7.77 88.38 0.69 4.77 16 16 N -0.50 -12.12 11.55 -303.17 -3.50 -15.62 16 17 C 0.14 2.98 6.94 138.46 0.96 3.94 16 18 C -0.07 -0.93 5.89 29.85 0.18 -0.75 16 19 C 0.46 7.51 3.15 71.98 0.23 7.74 16 20 F -0.19 -3.51 17.03 44.97 0.77 -2.74 16 21 F -0.17 -2.56 17.32 44.97 0.78 -1.78 16 22 F -0.19 -3.95 17.02 44.97 0.77 -3.18 16 23 N -0.37 -7.62 12.16 -60.30 -0.73 -8.36 16 24 O 0.11 1.92 11.31 74.81 0.85 2.76 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.16 2.65 8.14 -2.39 -0.02 2.64 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.21 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.17 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -84.17 340.21 2.87 -81.30 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: 1.13 Total: -3.48 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.95 Total: -30.38 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -3.95 Total: -79.12 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.86 Total: -30.70 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 2.31 Total: -7.71 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 25.29 SS G_CDS: -0.74 Total: 24.55 kcal Total: -84.17 2.87 -81.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318851019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.494 kcal (2) G-P(sol) polarization free energy of solvation -84.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds