Wall clock time and date at job start Sat Apr 11 2020 01:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42096 * 110.54619 * 2 1 4 4 O 1.42100 * 110.54138 * 223.24767 * 2 1 3 5 5 C 1.76201 * 104.44924 * 111.62699 * 2 1 3 6 6 C 1.38121 * 120.03917 * 115.29561 * 5 2 1 7 7 C 1.38273 * 120.07586 * 180.32132 * 6 5 2 8 8 C 1.38315 * 120.15198 * 359.67856 * 7 6 5 9 9 C 1.38075 * 120.07477 * 359.97438 * 8 7 6 10 10 C 1.38908 * 120.03920 * 294.99740 * 5 2 1 11 11 N 1.39724 * 120.07481 * 359.97397 * 10 5 2 12 12 C 1.34774 * 120.00041 * 154.86104 * 11 10 5 13 13 O 1.21372 * 120.00241 * 354.49204 * 12 11 10 14 14 C 1.49355 * 120.00149 * 174.20561 * 12 11 10 15 15 O 1.21362 * 119.99548 * 0.28096 * 14 12 11 16 16 N 1.34771 * 120.00162 * 180.27986 * 14 12 11 17 17 C 1.46503 * 120.00158 * 180.02562 * 16 14 12 18 18 C 1.50699 * 109.47293 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99882 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99990 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47080 * 60.00192 * 22 20 18 24 24 H 1.48499 * 109.46953 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46970 * 300.00353 * 22 20 18 26 26 H 1.08994 * 109.46682 * 308.37344 * 1 2 3 27 27 H 1.08990 * 109.46771 * 68.37593 * 1 2 3 28 28 H 1.09004 * 109.47089 * 188.37735 * 1 2 3 29 29 H 1.08005 * 119.96532 * 359.97438 * 6 5 2 30 30 H 1.07998 * 119.92502 * 179.70365 * 7 6 5 31 31 H 1.08003 * 119.96604 * 180.02562 * 8 7 6 32 32 H 1.08005 * 120.03960 * 180.02562 * 9 8 7 33 33 H 0.96996 * 119.99679 * 334.86912 * 11 10 5 34 34 H 0.96999 * 120.00131 * 0.02562 * 16 14 12 35 35 H 1.09000 * 109.46564 * 299.99960 * 17 16 14 36 36 H 1.08996 * 109.47300 * 59.99482 * 17 16 14 37 37 H 0.97002 * 119.99746 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6289 1.5862 6 6 2.9209 -1.8336 1.6916 7 6 3.2605 -2.3310 2.9363 8 6 2.9393 -1.6214 4.0793 9 6 2.2787 -0.4130 3.9808 10 6 1.9351 0.0894 2.7317 11 7 1.2661 1.3117 2.6283 12 6 0.5212 1.7613 3.6575 13 8 0.3495 1.0611 4.6339 14 6 -0.0879 3.1238 3.5994 15 8 0.0838 3.8240 2.6231 16 7 -0.8282 3.5756 4.6310 17 6 -1.4261 4.9118 4.5737 18 6 -2.1980 5.1715 5.8417 19 1 -2.2395 4.4166 6.6128 20 6 -2.8513 6.3729 6.0172 21 7 -2.8004 7.2924 5.0783 22 14 -3.8088 6.6946 7.5886 23 1 -2.8910 6.6119 8.7532 24 1 -4.4147 8.0491 7.5305 25 1 -4.8821 5.6784 7.7311 26 1 -0.3632 0.6379 0.8056 27 1 -0.3632 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 3.1729 -2.3905 0.8012 30 1 3.7779 -3.2756 3.0162 31 1 3.2063 -2.0126 5.0500 32 1 2.0285 0.1408 4.8737 33 1 1.3378 1.8365 1.8158 34 1 -0.9651 3.0160 5.4114 35 1 -0.6386 5.6579 4.4680 36 1 -2.1004 4.9718 3.7195 37 1 -3.2604 8.1375 5.2016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320921953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:45 Heat of formation + Delta-G solvation = -99.611062 kcal Electronic energy + Delta-G solvation = -25096.600460 eV Core-core repulsion = 21160.109948 eV Total energy + Delta-G solvation = -3936.490512 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23864 -39.32274 -38.06836 -37.49723 -36.27262 -35.48822 -34.36174 -32.47216 -31.60325 -30.22574 -29.82582 -27.84360 -25.16959 -23.79787 -23.10403 -21.78050 -20.18008 -19.59596 -18.77490 -18.11966 -17.45351 -16.76889 -16.49631 -16.16891 -15.90985 -15.84443 -15.21951 -15.16479 -14.86067 -14.41398 -14.27934 -14.05581 -13.64300 -13.49603 -13.26452 -13.20583 -12.81553 -12.38852 -12.27788 -12.20682 -12.12127 -12.02306 -11.46225 -11.33979 -11.15827 -11.09158 -10.95647 -10.77127 -10.39222 -9.68384 -9.57384 -9.31114 -8.90856 -8.61473 -8.22036 -6.27874 -4.36065 -0.30185 0.42871 0.89401 1.61978 2.26261 2.51911 3.11593 3.20642 3.25700 3.27257 3.39837 3.54240 3.74929 3.84531 4.25193 4.37615 4.46728 4.61027 4.68652 4.86330 4.88899 5.07300 5.08881 5.13213 5.34794 5.44064 5.62478 5.83322 5.92008 6.09940 6.54474 6.68712 6.95750 7.01197 7.27801 7.40153 7.54950 7.79300 8.23068 8.42628 8.73352 9.30498 10.82025 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.002924 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.794240 B = 9574.492624 C =10540.739424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.495 3.505 3 O -0.932 6.932 4 O -0.935 6.935 5 C -0.693 4.693 6 C -0.002 4.002 7 C -0.161 4.161 8 C -0.043 4.043 9 C -0.152 4.152 10 C 0.247 3.753 11 N -0.668 5.668 12 C 0.512 3.488 13 O -0.490 6.490 14 C 0.488 3.512 15 O -0.525 6.525 16 N -0.667 5.667 17 C 0.246 3.754 18 C -0.550 4.550 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.149 0.851 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.156 0.844 33 H 0.431 0.569 34 H 0.405 0.595 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.990 -19.761 -6.620 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.674 3.326 3 O -0.929 6.929 4 O -0.933 6.933 5 C -0.782 4.782 6 C -0.021 4.021 7 C -0.180 4.180 8 C -0.062 4.062 9 C -0.172 4.172 10 C 0.149 3.851 11 N -0.319 5.319 12 C 0.295 3.705 13 O -0.362 6.362 14 C 0.266 3.734 15 O -0.403 6.403 16 N -0.316 5.316 17 C 0.126 3.874 18 C -0.588 4.588 19 H 0.084 0.916 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.167 0.833 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.174 0.826 33 H 0.274 0.726 34 H 0.240 0.760 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.402 -19.143 -7.271 22.533 hybrid contribution -0.996 -0.024 1.575 1.864 sum 8.406 -19.167 -5.696 21.691 Atomic orbital electron populations 1.30245 1.24937 1.12494 1.12467 1.05341 0.78130 0.74893 0.74219 1.93607 1.77285 1.36115 1.85871 1.93561 1.77579 1.61504 1.60617 1.30122 1.20788 1.08125 1.19198 1.20788 0.90925 0.91255 0.99152 1.21281 1.03177 1.01299 0.92276 1.21412 0.92575 0.93011 0.99163 1.21596 1.00267 0.98038 0.97342 1.17264 0.89688 0.84300 0.93858 1.43984 1.46760 1.20082 1.21051 1.21153 0.78351 0.88692 0.82301 1.90708 1.57296 1.56954 1.31221 1.19550 0.82328 0.85953 0.85612 1.90794 1.60160 1.57223 1.32146 1.46446 1.46905 1.20377 1.17867 1.19403 0.93543 0.76013 0.98434 1.21140 1.33224 1.01960 1.02459 0.91568 1.24937 0.96114 0.95513 0.97247 1.69952 1.42237 1.06677 1.33215 0.86408 0.79974 0.77557 0.82620 1.19935 1.20991 1.19955 0.85169 0.84250 0.84475 0.83331 0.84874 0.84710 0.82629 0.72621 0.76018 0.94480 0.94515 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.66 10.71 101.05 1.08 -3.58 16 2 S 2.49 25.00 5.22 -107.50 -0.56 24.44 16 3 O -0.93 -12.48 15.91 -57.54 -0.92 -13.40 16 4 O -0.94 -10.84 16.74 -57.54 -0.96 -11.81 16 5 C -0.69 -7.42 5.60 -39.38 -0.22 -7.64 16 6 C 0.00 -0.02 9.50 -39.61 -0.38 -0.39 16 7 C -0.16 -1.31 10.04 -39.54 -0.40 -1.70 16 8 C -0.04 -0.39 10.04 -39.61 -0.40 -0.78 16 9 C -0.15 -1.79 8.72 -39.38 -0.34 -2.14 16 10 C 0.25 3.08 6.37 -83.75 -0.53 2.54 16 11 N -0.67 -9.25 4.24 -10.30 -0.04 -9.30 16 12 C 0.51 8.08 7.69 -11.63 -0.09 7.99 16 13 O -0.49 -7.82 13.64 5.48 0.07 -7.74 16 14 C 0.49 9.31 7.89 -11.63 -0.09 9.22 16 15 O -0.53 -11.31 16.48 5.49 0.09 -11.22 16 16 N -0.67 -13.56 5.54 -61.94 -0.34 -13.91 16 17 C 0.25 6.13 5.43 -5.19 -0.03 6.10 16 18 C -0.55 -14.31 9.28 -34.44 -0.32 -14.63 16 19 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -24.98 13.29 55.43 0.74 -24.24 16 22 Si 0.91 20.24 29.54 -169.99 -5.02 15.21 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H 0.13 1.04 7.12 -51.93 -0.37 0.68 16 27 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.14 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.15 1.12 7.21 -52.48 -0.38 0.74 16 30 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.16 1.98 5.79 -52.48 -0.30 1.67 16 33 H 0.43 5.94 5.44 -40.82 -0.22 5.72 16 34 H 0.40 7.48 7.79 -40.82 -0.32 7.16 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -33.58 336.56 -7.35 -40.92 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -3.66 Total: 9.31 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.81 Total: -3.35 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.35 Total: -47.44 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.71 Total: -44.17 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 25.00 SS G_CDS: -0.56 Total: 24.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.58 -7.35 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320921953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.687 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds