Wall clock time and date at job start Sat Apr 11 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39929 * 125.74585 * 2 1 4 4 C 1.30410 * 108.96014 * 179.97438 * 3 2 1 5 5 C 1.41343 * 108.04656 * 0.02562 * 4 3 2 6 6 C 1.47294 * 126.43353 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00307 * 180.02562 * 6 5 4 8 8 N 1.34783 * 120.00344 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.00252 * 179.97438 * 8 6 5 10 10 C 1.53008 * 109.45807 * 60.00347 * 9 8 6 11 11 C 1.53042 * 109.46280 * 300.03230 * 9 8 6 12 12 C 1.53164 * 109.32517 * 301.35797 * 11 9 8 13 13 N 1.46921 * 108.76941 * 305.35290 * 12 11 9 14 14 C 1.36941 * 120.63548 * 233.63545 * 13 12 11 15 15 H 1.07997 * 120.00438 * 151.81049 * 14 13 12 16 16 C 1.38814 * 119.99565 * 331.80849 * 14 13 12 17 17 N 1.31622 * 119.99801 * 343.08103 * 16 14 13 18 18 Si 1.86800 * 119.99796 * 163.07809 * 16 14 13 19 19 H 1.48499 * 109.47098 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46725 * 120.00257 * 18 16 14 21 21 H 1.48501 * 109.47085 * 239.99919 * 18 16 14 22 22 C 1.46930 * 118.73954 * 53.61108 * 13 12 11 23 23 C 1.53038 * 109.46299 * 179.97438 * 9 8 6 24 24 C 1.34342 * 125.75551 * 179.97438 * 2 1 3 25 25 Cl 1.73601 * 126.31668 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.46818 * 90.03354 * 1 2 3 27 27 H 1.09006 * 109.47180 * 210.02503 * 1 2 3 28 28 H 1.08998 * 109.47598 * 330.03276 * 1 2 3 29 29 H 1.07997 * 125.97860 * 179.97438 * 4 3 2 30 30 H 0.97000 * 119.99826 * 0.02562 * 8 6 5 31 31 H 1.08995 * 109.46702 * 59.99855 * 10 9 8 32 32 H 1.09003 * 109.47086 * 179.97438 * 10 9 8 33 33 H 1.08994 * 109.46998 * 300.00017 * 10 9 8 34 34 H 1.09003 * 109.49585 * 61.29460 * 11 9 8 35 35 H 1.08999 * 109.49690 * 181.39036 * 11 9 8 36 36 H 1.09004 * 109.58902 * 185.56934 * 12 11 9 37 37 H 1.09000 * 109.70969 * 65.21071 * 12 11 9 38 38 H 0.96998 * 119.99524 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.58957 * 186.60487 * 22 13 12 40 40 H 1.09000 * 109.70277 * 66.24652 * 22 13 12 41 41 H 1.08997 * 109.49921 * 178.60906 * 23 9 8 42 42 H 1.09003 * 109.49891 * 298.67618 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1357 0.0000 4 6 3.5310 0.7591 0.0006 5 6 3.5621 -0.6540 0.0003 6 6 4.7661 -1.5025 0.0003 7 8 4.6565 -2.7138 -0.0004 8 7 5.9894 -0.9366 0.0009 9 6 7.1869 -1.7805 0.0014 10 6 7.1886 -2.6636 -1.2481 11 6 7.1870 -2.6647 1.2505 12 6 7.1503 -1.7783 2.4990 13 7 8.2663 -0.8248 2.4349 14 6 9.1537 -0.7184 3.4724 15 1 10.1692 -0.4027 3.2842 16 6 8.7480 -1.0164 4.7660 17 7 7.4655 -1.0744 5.0565 18 14 10.0220 -1.3350 6.0944 19 1 11.3835 -1.2097 5.5148 20 1 9.8564 -0.3431 7.1870 21 1 9.8388 -2.7049 6.6376 22 6 8.4125 0.0120 1.2361 23 6 8.4349 -0.8948 0.0015 24 6 2.2500 -1.0902 0.0005 25 17 1.7156 -2.7419 0.0019 26 1 -0.3633 -0.0006 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5133 29 1 4.3908 1.4126 0.0003 30 1 6.0769 0.0294 0.0018 31 1 7.1880 -2.0340 -2.1379 32 1 8.0798 -3.2913 -1.2482 33 1 6.2996 -3.2941 -1.2486 34 1 6.3100 -3.3119 1.2383 35 1 8.0900 -3.2751 1.2640 36 1 7.2499 -2.3979 3.3903 37 1 6.2065 -1.2342 2.5359 38 1 7.1820 -1.2822 5.9606 39 1 9.3448 0.5736 1.2939 40 1 7.5730 0.7037 1.1662 41 1 9.3261 -1.5219 0.0268 42 1 8.4464 -0.2824 -0.9002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045478851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:58 Heat of formation + Delta-G solvation = 42.725107 kcal Electronic energy + Delta-G solvation = -26577.758162 eV Core-core repulsion = 22813.521948 eV Total energy + Delta-G solvation = -3764.236213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.52550 -41.05030 -38.62583 -37.99556 -36.01483 -34.65683 -33.50297 -32.44276 -31.52079 -31.04075 -29.01568 -28.06242 -25.88086 -24.31195 -23.83355 -22.69258 -22.15232 -21.34524 -19.99492 -19.24582 -18.60894 -17.29424 -17.01932 -16.79973 -16.27031 -15.79367 -15.77216 -15.52979 -15.15632 -15.03824 -14.79409 -14.64863 -14.39582 -13.95540 -13.76357 -13.62757 -13.22432 -13.14905 -13.11159 -12.88985 -12.81596 -12.78129 -12.54128 -12.46971 -12.14831 -11.90832 -11.89353 -11.69851 -11.24914 -11.22669 -10.55458 -10.49840 -10.42342 -9.97240 -9.66856 -8.60386 -7.82653 -5.27651 0.16246 0.23753 1.03556 1.46226 1.48833 1.50946 1.58599 2.36162 2.51798 2.54540 3.31159 3.32874 3.76204 3.83297 3.87404 3.99909 4.16251 4.23163 4.28604 4.32436 4.47726 4.57427 4.57538 4.76858 4.79686 4.92115 4.96761 5.04527 5.13849 5.16700 5.22551 5.31896 5.42763 5.44299 5.47935 5.57901 5.68749 5.77097 5.88044 6.24575 6.43291 6.80330 7.19566 7.46899 7.93009 8.44035 9.22914 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003825 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.343157 B = 7318.955020 C = 7852.431667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.351 5.351 3 N -0.289 5.289 4 C 0.095 3.905 5 C -0.289 4.289 6 C 0.590 3.410 7 O -0.562 6.562 8 N -0.700 5.700 9 C 0.191 3.809 10 C -0.149 4.149 11 C -0.138 4.138 12 C 0.195 3.805 13 N -0.607 5.607 14 C -0.257 4.257 15 H 0.070 0.930 16 C -0.052 4.052 17 N -0.936 5.936 18 Si 0.961 3.039 19 H -0.263 1.263 20 H -0.293 1.293 21 H -0.296 1.296 22 C 0.139 3.861 23 C -0.123 4.123 24 C 0.173 3.827 25 Cl 0.030 6.970 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.223 0.777 30 H 0.405 0.595 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.037 0.963 37 H -0.007 1.007 38 H 0.246 0.754 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 2.585 -15.790 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.133 5.133 3 N -0.110 5.110 4 C -0.091 4.091 5 C -0.305 4.305 6 C 0.378 3.622 7 O -0.442 6.442 8 N -0.351 5.351 9 C 0.105 3.895 10 C -0.207 4.207 11 C -0.178 4.178 12 C 0.069 3.931 13 N -0.331 5.331 14 C -0.387 4.387 15 H 0.087 0.913 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.220 1.220 21 H -0.223 1.223 22 C 0.014 3.986 23 C -0.162 4.162 24 C 0.013 3.987 25 Cl 0.058 6.942 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.239 0.761 30 H 0.241 0.759 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.011 0.989 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.965 2.575 -15.656 20.490 hybrid contribution 0.797 -0.736 1.414 1.782 sum -12.169 1.840 -14.242 18.823 Atomic orbital electron populations 1.22503 0.70634 1.06762 1.06085 1.48881 1.08752 1.01486 1.54188 1.77282 1.02297 1.05905 1.25534 1.24423 0.96175 0.92961 0.95559 1.20068 0.92010 0.94724 1.23708 1.17196 0.82658 0.86805 0.75563 1.90709 1.86983 1.14768 1.51718 1.45726 1.04461 1.10387 1.74517 1.20158 0.84253 0.90678 0.94404 1.22104 1.02559 0.99877 0.96208 1.22369 1.00746 0.98485 0.96237 1.20288 0.88140 0.90169 0.94510 1.44283 1.30901 1.41518 1.16360 1.19575 0.91738 1.40986 0.86407 0.91254 1.25762 0.97151 1.02589 0.99230 1.70216 1.15071 1.53921 1.19000 0.85293 0.79649 0.76726 0.79330 1.18740 1.22048 1.22297 1.21091 0.99125 0.92206 0.86166 1.22208 0.96110 0.98798 0.99130 1.22150 0.91048 0.84588 1.00945 1.98443 1.89743 1.09776 1.96218 0.87653 0.87783 0.86802 0.76080 0.75892 0.91190 0.91465 0.92467 0.92264 0.92815 0.94462 0.98920 0.94523 0.92275 0.95710 0.90896 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 11.28 127.77 1.44 2.40 16 2 N -0.35 -7.88 3.98 -357.40 -1.42 -9.30 16 3 N -0.29 -7.16 12.49 -56.26 -0.70 -7.86 16 4 C 0.10 2.32 11.50 85.67 0.99 3.31 16 5 C -0.29 -8.44 6.13 -20.12 -0.12 -8.57 16 6 C 0.59 19.66 7.23 86.62 0.63 20.29 16 7 O -0.56 -21.57 11.86 -4.10 -0.05 -21.62 16 8 N -0.70 -21.14 4.10 -426.14 -1.75 -22.88 16 9 C 0.19 6.11 0.66 3.63 0.00 6.11 16 10 C -0.15 -4.18 8.40 71.98 0.60 -3.57 16 11 C -0.14 -5.71 4.66 30.66 0.14 -5.57 16 12 C 0.19 9.78 5.04 86.35 0.44 10.22 16 13 N -0.61 -29.79 2.99 -699.14 -2.09 -31.89 16 14 C -0.26 -14.02 9.58 84.03 0.81 -13.21 16 15 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 16 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16 17 N -0.94 -56.87 11.20 21.65 0.24 -56.63 16 18 Si 0.96 45.58 29.59 68.60 2.03 47.60 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 22 C 0.14 5.19 6.24 86.36 0.54 5.73 16 23 C -0.12 -3.62 4.96 30.67 0.15 -3.47 16 24 C 0.17 4.63 7.53 84.32 0.63 5.27 16 25 Cl 0.03 0.76 27.34 -2.72 -0.07 0.68 16 26 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.10 1.02 7.77 -2.38 -0.02 1.00 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.22 3.90 7.50 -2.91 -0.02 3.88 16 30 H 0.40 10.37 6.22 -92.71 -0.58 9.79 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.84 6.16 -2.39 -0.01 1.83 16 34 H 0.06 2.60 6.20 -2.39 -0.01 2.59 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.04 2.19 6.06 -2.38 -0.01 2.17 16 37 H -0.01 -0.39 7.74 -2.39 -0.02 -0.41 16 38 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.06 2.14 7.93 -2.39 -0.02 2.13 16 40 H 0.03 0.88 6.94 -2.39 -0.02 0.87 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -73.46 348.72 3.32 -70.14 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.48 Total: 15.36 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 6.66 Total: 16.40 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -5.72 Total: -128.56 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: 0.76 SS G_CDS: -0.07 Total: 0.68 kcal Total: -73.46 3.32 -70.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045478851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.861 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds