Wall clock time and date at job start Sat Apr 11 2020 01:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47495 * 274.89982 * 3 2 1 5 5 H 1.48510 * 109.47023 * 34.89775 * 3 2 1 6 6 H 1.48502 * 109.47427 * 154.89713 * 3 2 1 7 7 C 1.38809 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00232 * 339.75298 * 7 2 1 9 9 N 1.36942 * 120.00105 * 159.75466 * 7 2 1 10 10 C 1.46925 * 120.62988 * 332.79045 * 9 7 2 11 11 C 1.53189 * 108.77514 * 233.60927 * 10 9 7 12 12 C 1.53041 * 109.31626 * 305.36753 * 11 10 9 13 13 F 1.39900 * 109.45771 * 301.34587 * 12 11 10 14 14 F 1.39900 * 109.45143 * 181.37752 * 12 11 10 15 15 C 1.53036 * 109.53765 * 61.36419 * 12 11 10 16 16 H 1.08997 * 109.50165 * 58.61792 * 15 12 11 17 17 C 1.53002 * 109.50174 * 178.68782 * 15 12 11 18 18 N 1.46492 * 109.47317 * 184.93579 * 17 15 12 19 19 C 1.34783 * 119.99815 * 179.97438 * 18 17 15 20 20 O 1.21509 * 119.99906 * 359.97438 * 19 18 17 21 21 C 1.48147 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.39441 * 120.09955 * 179.97438 * 21 19 18 23 23 N 1.32081 * 119.87577 * 180.02562 * 22 21 19 24 24 C 1.32141 * 120.06975 * 0.02562 * 23 22 21 25 25 C 1.38727 * 120.19756 * 359.97438 * 24 23 22 26 26 N 1.31807 * 120.12550 * 359.72255 * 25 24 23 27 27 C 1.46937 * 120.60381 * 152.81734 * 9 7 2 28 28 H 0.97004 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58445 * 113.82291 * 10 9 7 30 30 H 1.08995 * 109.59038 * 353.40042 * 10 9 7 31 31 H 1.08997 * 109.49908 * 185.41304 * 11 10 9 32 32 H 1.09006 * 109.52230 * 65.33680 * 11 10 9 33 33 H 1.08999 * 109.47009 * 64.93185 * 17 15 12 34 34 H 1.09011 * 109.46383 * 304.93528 * 17 15 12 35 35 H 0.97002 * 120.00696 * 359.97438 * 18 17 15 36 36 H 1.07998 * 120.06042 * 0.02580 * 22 21 19 37 37 H 1.07999 * 119.90087 * 180.02562 * 24 23 22 38 38 H 1.08000 * 119.94244 * 180.02562 * 25 24 23 39 39 H 1.09000 * 109.61297 * 6.61439 * 27 9 7 40 40 H 1.08999 * 109.55676 * 246.19390 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3941 2.1063 -1.3949 5 1 1.5031 2.6206 0.8011 6 1 3.5956 1.4126 0.5940 7 6 2.0102 -1.2021 -0.0005 8 1 1.5204 -2.1087 0.3227 9 7 3.3162 -1.2385 -0.4109 10 6 3.8267 -0.2511 -1.3717 11 6 4.4778 -0.9936 -2.5428 12 6 5.5403 -1.9548 -2.0048 13 9 6.4983 -1.2342 -1.2836 14 9 6.1587 -2.6116 -3.0742 15 6 4.8800 -2.9857 -1.0865 16 1 4.1165 -3.5310 -1.6413 17 6 5.9376 -3.9659 -0.5751 18 7 5.2884 -5.0203 0.2076 19 6 6.0285 -6.0018 0.7605 20 8 7.2341 -6.0122 0.6093 21 6 5.3720 -7.0679 1.5525 22 6 6.1356 -8.0845 2.1250 23 7 5.5457 -9.0330 2.8299 24 6 4.2343 -9.0191 2.9919 25 6 3.4718 -8.0090 2.4236 26 7 4.0531 -7.0553 1.7238 27 6 4.2329 -2.2664 0.1011 28 1 -0.4851 0.8401 0.0004 29 1 4.5669 0.3837 -0.8847 30 1 3.0031 0.3607 -1.7396 31 1 4.9451 -0.2741 -3.2151 32 1 3.7181 -1.5573 -3.0843 33 1 6.6520 -3.4343 0.0535 34 1 6.4599 -4.4112 -1.4221 35 1 4.3259 -5.0123 0.3280 36 1 7.2073 -8.0963 1.9923 37 1 3.7549 -9.7958 3.5691 38 1 2.4003 -8.0014 2.5590 39 1 3.6773 -2.9842 0.7046 40 1 5.0059 -1.7959 0.7087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046910192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:33 Heat of formation + Delta-G solvation = -57.936248 kcal Electronic energy + Delta-G solvation = -28049.544235 eV Core-core repulsion = 23729.146337 eV Total energy + Delta-G solvation = -4320.397897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.73747 -46.68702 -41.54107 -39.52138 -37.70572 -35.34539 -34.69477 -32.75120 -32.10948 -31.13223 -30.68923 -26.80911 -25.43151 -25.11482 -24.63958 -22.57610 -21.91262 -21.00507 -19.91995 -18.54670 -17.92808 -17.27782 -17.11021 -16.98857 -16.45292 -15.88023 -15.74131 -15.44313 -15.25487 -15.10182 -14.94470 -14.29564 -14.15616 -13.60675 -13.54700 -13.20989 -13.15959 -13.02945 -12.92451 -12.42110 -12.20023 -12.06942 -12.00492 -11.89148 -11.72335 -11.64328 -11.01995 -10.79451 -10.58706 -10.36549 -10.22889 -9.93189 -9.83926 -9.59461 -9.47091 -9.17435 -8.81475 -7.22919 -6.08947 -3.48693 0.04059 0.67207 2.48809 2.78467 3.21679 3.40654 3.42793 3.46387 3.62438 3.81453 3.98792 4.08328 4.34376 4.38652 4.42265 4.51937 4.68597 4.76894 4.78916 4.86699 5.10089 5.15099 5.23509 5.26078 5.46026 5.65004 5.76494 5.83492 5.88482 5.94398 6.07005 6.19626 6.22653 6.32362 6.39489 6.59862 6.72688 7.17226 7.40595 7.74271 7.94881 8.16281 8.73498 9.54479 9.87530 11.06093 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003740 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.813714 B = 7484.081560 C = 9068.725796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.029 3.971 3 Si 0.877 3.123 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.269 4.269 8 H 0.090 0.910 9 N -0.603 5.603 10 C 0.125 3.875 11 C -0.172 4.172 12 C 0.302 3.698 13 F -0.199 7.199 14 F -0.208 7.208 15 C -0.157 4.157 16 H 0.109 0.891 17 C 0.123 3.877 18 N -0.700 5.700 19 C 0.574 3.426 20 O -0.530 6.530 21 C 0.032 3.968 22 C 0.108 3.892 23 N -0.441 5.441 24 C 0.070 3.930 25 C 0.054 3.946 26 N -0.409 5.409 27 C 0.155 3.845 28 H 0.265 0.735 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.415 0.585 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.077 0.923 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 -13.768 1.328 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.707 3.293 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.108 0.892 9 N -0.326 5.326 10 C -0.001 4.001 11 C -0.212 4.212 12 C 0.266 3.734 13 F -0.180 7.180 14 F -0.189 7.189 15 C -0.179 4.179 16 H 0.127 0.873 17 C -0.001 4.001 18 N -0.351 5.351 19 C 0.358 3.642 20 O -0.406 6.406 21 C -0.109 4.109 22 C -0.052 4.052 23 N -0.155 5.155 24 C -0.090 4.090 25 C -0.109 4.109 26 N -0.126 5.126 27 C 0.028 3.972 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.200 0.800 37 H 0.194 0.806 38 H 0.197 0.803 39 H 0.095 0.905 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.985 -13.617 1.217 16.360 hybrid contribution -0.053 0.993 -0.033 0.995 sum 8.933 -12.624 1.184 15.510 Atomic orbital electron populations 1.69814 1.05713 1.26794 1.52118 1.25253 0.95215 0.97597 0.99021 0.87041 0.80384 0.84687 0.77177 1.21479 1.22825 1.19163 1.18891 0.84264 0.95019 1.41458 0.89238 1.44386 1.08602 1.32399 1.47217 1.21410 0.97832 0.92189 0.88665 1.23086 0.97565 0.99253 1.01324 1.20933 0.83443 0.88516 0.80554 1.92973 1.67034 1.79363 1.78612 1.92976 1.85173 1.82473 1.58280 1.22981 0.98527 0.96091 1.00272 0.87326 1.21415 0.94982 0.87780 0.95915 1.45794 1.12180 1.25248 1.51879 1.17602 0.86257 0.81096 0.79281 1.90812 1.13295 1.75928 1.60544 1.22212 0.91112 0.97596 1.00006 1.23845 1.02445 0.88478 0.90406 1.68640 1.11187 1.23204 1.12486 1.24143 0.90551 0.98209 0.96147 1.23931 1.02498 0.90591 0.93863 1.68397 1.09697 1.23416 1.11126 1.20962 0.93030 0.91671 0.91507 0.92540 0.94245 0.89654 0.89988 0.88491 0.90176 0.90419 0.74726 0.80004 0.80612 0.80283 0.90478 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.97 55.49 0.78 -25.45 16 2 C 0.03 0.79 5.24 -17.43 -0.09 0.70 16 3 Si 0.88 21.16 24.34 -169.99 -4.14 17.03 16 4 H -0.29 -6.65 6.70 56.52 0.38 -6.27 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.04 16 6 H -0.27 -6.36 6.45 56.52 0.36 -6.00 16 7 C -0.27 -6.93 10.04 -15.06 -0.15 -7.08 16 8 H 0.09 2.44 8.05 -52.48 -0.42 2.02 16 9 N -0.60 -13.13 2.77 -172.32 -0.48 -13.61 16 10 C 0.12 2.54 3.99 -3.71 -0.01 2.52 16 11 C -0.17 -2.86 5.62 -26.61 -0.15 -3.01 16 12 C 0.30 4.86 1.63 -26.69 -0.04 4.82 16 13 F -0.20 -3.42 15.73 2.25 0.04 -3.38 16 14 F -0.21 -3.27 16.41 2.25 0.04 -3.24 16 15 C -0.16 -2.39 2.03 -90.50 -0.18 -2.57 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 17 C 0.12 1.72 4.83 -4.04 -0.02 1.70 16 18 N -0.70 -9.15 5.32 -61.15 -0.33 -9.48 16 19 C 0.57 7.82 7.81 -12.19 -0.10 7.73 16 20 O -0.53 -8.41 16.35 5.36 0.09 -8.32 16 21 C 0.03 0.38 6.75 -82.84 -0.56 -0.18 16 22 C 0.11 1.15 10.77 -17.00 -0.18 0.96 16 23 N -0.44 -4.35 10.49 -12.71 -0.13 -4.49 16 24 C 0.07 0.51 11.23 -17.24 -0.19 0.32 16 25 C 0.05 0.42 11.22 -17.38 -0.20 0.22 16 26 N -0.41 -4.48 9.71 -9.61 -0.09 -4.57 16 27 C 0.16 2.77 5.40 -3.70 -0.02 2.75 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.04 0.82 6.76 -51.93 -0.35 0.46 16 30 H 0.09 1.87 4.49 -51.93 -0.23 1.64 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.08 1.18 7.97 -51.93 -0.41 0.77 16 34 H 0.08 1.09 7.63 -51.92 -0.40 0.70 16 35 H 0.42 5.18 7.05 -40.82 -0.29 4.89 16 36 H 0.18 1.75 7.65 -52.49 -0.40 1.35 16 37 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.08 1.32 7.14 -51.93 -0.37 0.95 16 40 H 0.04 0.69 7.92 -51.93 -0.41 0.28 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -31.51 335.45 -5.68 -37.18 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.60 Total: 4.41 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -1.90 Total: 8.87 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.26 Total: -57.60 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.07 Total: -6.62 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.51 -5.68 -37.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046910192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.752 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds