Wall clock time and date at job start Sat Apr 11 2020 01:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47495 * 274.89982 * 3 2 1 5 5 H 1.48510 * 109.47023 * 34.89775 * 3 2 1 6 6 H 1.48502 * 109.47427 * 154.89713 * 3 2 1 7 7 C 1.38809 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00232 * 339.75298 * 7 2 1 9 9 N 1.36942 * 120.00105 * 159.75466 * 7 2 1 10 10 C 1.46925 * 120.62988 * 332.79045 * 9 7 2 11 11 C 1.53189 * 108.77514 * 233.60927 * 10 9 7 12 12 C 1.53041 * 109.31626 * 305.36753 * 11 10 9 13 13 F 1.39900 * 109.45771 * 301.34587 * 12 11 10 14 14 F 1.39900 * 109.45143 * 181.37752 * 12 11 10 15 15 C 1.53036 * 109.53765 * 61.36419 * 12 11 10 16 16 H 1.08997 * 109.50165 * 58.61792 * 15 12 11 17 17 C 1.53002 * 109.50174 * 178.68782 * 15 12 11 18 18 N 1.46492 * 109.47317 * 184.93579 * 17 15 12 19 19 C 1.34783 * 119.99815 * 179.97438 * 18 17 15 20 20 O 1.21509 * 119.99906 * 359.97438 * 19 18 17 21 21 C 1.48147 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.39441 * 120.09955 * 179.97438 * 21 19 18 23 23 N 1.32081 * 119.87577 * 180.02562 * 22 21 19 24 24 C 1.32141 * 120.06975 * 0.02562 * 23 22 21 25 25 C 1.38727 * 120.19756 * 359.97438 * 24 23 22 26 26 N 1.31807 * 120.12550 * 359.72255 * 25 24 23 27 27 C 1.46937 * 120.60381 * 152.81734 * 9 7 2 28 28 H 0.97004 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58445 * 113.82291 * 10 9 7 30 30 H 1.08995 * 109.59038 * 353.40042 * 10 9 7 31 31 H 1.08997 * 109.49908 * 185.41304 * 11 10 9 32 32 H 1.09006 * 109.52230 * 65.33680 * 11 10 9 33 33 H 1.08999 * 109.47009 * 64.93185 * 17 15 12 34 34 H 1.09011 * 109.46383 * 304.93528 * 17 15 12 35 35 H 0.97002 * 120.00696 * 359.97438 * 18 17 15 36 36 H 1.07998 * 120.06042 * 0.02580 * 22 21 19 37 37 H 1.07999 * 119.90087 * 180.02562 * 24 23 22 38 38 H 1.08000 * 119.94244 * 180.02562 * 25 24 23 39 39 H 1.09000 * 109.61297 * 6.61439 * 27 9 7 40 40 H 1.08999 * 109.55676 * 246.19390 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3941 2.1063 -1.3949 5 1 1.5031 2.6206 0.8011 6 1 3.5956 1.4126 0.5940 7 6 2.0102 -1.2021 -0.0005 8 1 1.5204 -2.1087 0.3227 9 7 3.3162 -1.2385 -0.4109 10 6 3.8267 -0.2511 -1.3717 11 6 4.4778 -0.9936 -2.5428 12 6 5.5403 -1.9548 -2.0048 13 9 6.4983 -1.2342 -1.2836 14 9 6.1587 -2.6116 -3.0742 15 6 4.8800 -2.9857 -1.0865 16 1 4.1165 -3.5310 -1.6413 17 6 5.9376 -3.9659 -0.5751 18 7 5.2884 -5.0203 0.2076 19 6 6.0285 -6.0018 0.7605 20 8 7.2341 -6.0122 0.6093 21 6 5.3720 -7.0679 1.5525 22 6 6.1356 -8.0845 2.1250 23 7 5.5457 -9.0330 2.8299 24 6 4.2343 -9.0191 2.9919 25 6 3.4718 -8.0090 2.4236 26 7 4.0531 -7.0553 1.7238 27 6 4.2329 -2.2664 0.1011 28 1 -0.4851 0.8401 0.0004 29 1 4.5669 0.3837 -0.8847 30 1 3.0031 0.3607 -1.7396 31 1 4.9451 -0.2741 -3.2151 32 1 3.7181 -1.5573 -3.0843 33 1 6.6520 -3.4343 0.0535 34 1 6.4599 -4.4112 -1.4221 35 1 4.3259 -5.0123 0.3280 36 1 7.2073 -8.0963 1.9923 37 1 3.7549 -9.7958 3.5691 38 1 2.4003 -8.0014 2.5590 39 1 3.6773 -2.9842 0.7046 40 1 5.0059 -1.7959 0.7087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046910192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:33 Heat of formation + Delta-G solvation = -80.990349 kcal Electronic energy + Delta-G solvation = -28050.543936 eV Core-core repulsion = 23729.146337 eV Total energy + Delta-G solvation = -4321.397598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.04728 -47.99634 -42.30620 -40.56974 -39.19466 -36.60025 -35.50858 -34.44706 -33.04966 -32.38747 -32.32906 -28.01797 -26.97282 -26.16397 -25.47173 -23.98976 -23.43179 -22.04890 -21.34634 -19.56866 -18.94187 -18.63304 -18.48794 -17.80063 -17.66313 -17.21945 -17.04090 -16.86163 -16.51426 -16.26182 -15.99777 -15.45276 -15.26960 -14.99013 -14.89030 -14.75254 -14.35509 -14.29979 -14.12875 -13.87467 -13.72662 -13.52701 -13.39273 -13.14918 -12.80438 -12.53755 -12.41923 -12.33499 -12.20927 -11.83863 -11.70218 -11.60295 -11.29550 -10.78723 -10.59365 -10.24240 -10.22739 -9.08332 -8.17074 -5.52487 -0.70734 -0.03204 1.29582 1.44272 1.50684 1.55270 1.77322 2.40005 2.64715 2.69541 2.86323 2.96934 3.03957 3.15599 3.19054 3.35329 3.38587 3.41194 3.71944 3.77273 3.92983 4.08488 4.17323 4.30053 4.33126 4.36381 4.52609 4.54599 4.60512 4.70737 4.76790 4.78027 4.92514 5.09963 5.18008 5.25814 5.81351 6.00983 6.11432 6.25193 6.60360 6.82313 6.91304 7.55037 7.93306 9.01594 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003740 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.813714 B = 7484.081560 C = 9068.725796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.024 4.024 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.312 1.312 6 H -0.262 1.262 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.615 5.615 10 C 0.119 3.881 11 C -0.166 4.166 12 C 0.304 3.696 13 F -0.204 7.204 14 F -0.202 7.202 15 C -0.144 4.144 16 H 0.117 0.883 17 C 0.132 3.868 18 N -0.696 5.696 19 C 0.575 3.425 20 O -0.559 6.559 21 C 0.009 3.991 22 C 0.103 3.897 23 N -0.459 5.459 24 C 0.088 3.912 25 C 0.056 3.944 26 N -0.430 5.430 27 C 0.155 3.845 28 H 0.262 0.738 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.419 0.581 36 H 0.183 0.817 37 H 0.220 0.780 38 H 0.215 0.785 39 H 0.080 0.920 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 -14.911 1.289 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.220 4.220 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.242 1.242 6 H -0.187 1.187 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.339 5.339 10 C -0.006 4.006 11 C -0.205 4.205 12 C 0.267 3.733 13 F -0.185 7.185 14 F -0.183 7.183 15 C -0.165 4.165 16 H 0.135 0.865 17 C 0.008 3.992 18 N -0.348 5.348 19 C 0.360 3.640 20 O -0.437 6.437 21 C -0.130 4.130 22 C -0.055 4.055 23 N -0.173 5.173 24 C -0.074 4.074 25 C -0.107 4.107 26 N -0.148 5.148 27 C 0.030 3.970 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.200 0.800 37 H 0.237 0.763 38 H 0.231 0.769 39 H 0.099 0.901 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.609 -14.760 1.148 17.649 hybrid contribution -0.278 1.177 0.053 1.211 sum 9.331 -13.583 1.201 16.523 Atomic orbital electron populations 1.69926 1.07209 1.27226 1.55132 1.25781 0.95678 1.00453 1.00094 0.86151 0.79000 0.81074 0.77686 1.19843 1.24155 1.18692 1.18864 0.85750 0.93959 1.39265 0.91566 1.44476 1.07866 1.33460 1.48071 1.21399 0.97381 0.92215 0.89590 1.22982 0.97792 0.99697 1.00071 1.20893 0.83237 0.88486 0.80665 1.92969 1.67261 1.79530 1.78782 1.92990 1.85031 1.82311 1.57984 1.22791 0.98761 0.95859 0.99052 0.86506 1.21254 0.94374 0.87654 0.95941 1.45738 1.12272 1.25019 1.51735 1.17898 0.85958 0.81275 0.78913 1.90783 1.14501 1.76726 1.61727 1.21877 0.91773 0.97823 1.01507 1.23849 1.02596 0.88521 0.90519 1.68713 1.12685 1.23068 1.12846 1.24890 0.89553 0.98359 0.94577 1.24598 1.04103 0.89596 0.92414 1.68352 1.09313 1.24910 1.12244 1.21033 0.92393 0.90951 0.92633 0.92857 0.94241 0.91261 0.87532 0.87814 0.90876 0.90174 0.74336 0.80028 0.76341 0.76867 0.90121 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.29 13.97 21.65 0.30 -55.98 16 2 C -0.02 -1.33 5.24 84.86 0.44 -0.89 16 3 Si 0.93 43.79 24.34 68.60 1.67 45.46 16 4 H -0.27 -11.96 6.70 99.48 0.67 -11.29 16 5 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.26 -11.97 6.45 99.48 0.64 -11.33 16 7 C -0.25 -12.90 10.04 84.03 0.84 -12.05 16 8 H 0.07 3.68 8.05 -2.91 -0.02 3.66 16 9 N -0.62 -26.21 2.77 -699.08 -1.94 -28.15 16 10 C 0.12 4.65 3.99 86.36 0.34 4.99 16 11 C -0.17 -5.09 5.62 30.67 0.17 -4.92 16 12 C 0.30 9.10 1.63 30.62 0.05 9.15 16 13 F -0.20 -6.61 15.73 44.97 0.71 -5.90 16 14 F -0.20 -5.85 16.41 44.97 0.74 -5.11 16 15 C -0.14 -4.13 2.03 -10.72 -0.02 -4.15 16 16 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 17 C 0.13 3.55 4.83 86.38 0.42 3.97 16 18 N -0.70 -17.85 5.32 -465.68 -2.48 -20.33 16 19 C 0.57 15.64 7.81 86.87 0.68 16.32 16 20 O -0.56 -17.94 16.35 -3.74 -0.06 -18.00 16 21 C 0.01 0.22 6.75 41.89 0.28 0.50 16 22 C 0.10 2.15 10.77 84.95 0.92 3.07 16 23 N -0.46 -8.25 10.49 -194.12 -2.04 -10.28 16 24 C 0.09 0.99 11.23 84.76 0.95 1.94 16 25 C 0.06 0.73 11.22 84.81 0.95 1.68 16 26 N -0.43 -8.86 9.71 -184.33 -1.79 -10.65 16 27 C 0.16 5.38 5.40 86.36 0.47 5.85 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.04 1.55 6.76 -2.39 -0.02 1.53 16 30 H 0.07 2.94 4.49 -2.39 -0.01 2.92 16 31 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 33 H 0.07 2.09 7.97 -2.39 -0.02 2.08 16 34 H 0.08 2.16 7.63 -2.38 -0.02 2.14 16 35 H 0.42 10.18 7.05 -92.71 -0.65 9.52 16 36 H 0.18 3.58 7.65 -2.91 -0.02 3.55 16 37 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.21 1.12 8.06 -2.91 -0.02 1.09 16 39 H 0.08 2.72 7.14 -2.39 -0.02 2.70 16 40 H 0.04 1.32 7.92 -2.39 -0.02 1.30 16 Total: -1.00 -68.51 335.45 1.95 -66.56 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.34 Total: 16.93 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 6.50 Total: 25.45 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -7.94 Total: -125.39 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.06 Total: -18.00 kcal Atomic # 9 Polarization: -12.46 SS G_CDS: 1.45 Total: -11.01 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.67 Total: 45.46 kcal Total: -68.51 1.95 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046910192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.429 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds