Wall clock time and date at job start Sat Apr 11 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00583 * 2 1 4 4 H 1.48495 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46982 * 300.00332 * 3 2 1 6 6 H 1.48507 * 109.46698 * 59.99862 * 3 2 1 7 7 C 1.38811 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00359 * 197.36240 * 7 2 1 9 9 N 1.36941 * 120.00195 * 17.36420 * 7 2 1 10 10 C 1.46921 * 120.62809 * 27.65967 * 9 7 2 11 11 C 1.53198 * 108.77241 * 126.43595 * 10 9 7 12 12 C 1.53041 * 109.31165 * 54.63902 * 11 10 9 13 13 F 1.39895 * 109.46146 * 178.61589 * 12 11 10 14 14 F 1.39891 * 109.45025 * 58.64438 * 12 11 10 15 15 C 1.53041 * 109.53480 * 298.63141 * 12 11 10 16 16 H 1.09003 * 109.50246 * 301.38381 * 15 12 11 17 17 C 1.53000 * 109.49856 * 181.31484 * 15 12 11 18 18 N 1.46495 * 109.47461 * 175.06297 * 17 15 12 19 19 C 1.34775 * 120.00396 * 180.02562 * 18 17 15 20 20 O 1.21517 * 119.99813 * 0.02562 * 19 18 17 21 21 C 1.48135 * 120.00243 * 180.02562 * 19 18 17 22 22 C 1.40115 * 121.14513 * 179.97438 * 21 19 18 23 23 C 1.38499 * 117.82349 * 180.02562 * 22 21 19 24 24 N 1.31919 * 119.96907 * 0.02562 * 23 22 21 25 25 N 1.28277 * 122.51628 * 359.97438 * 24 23 22 26 26 C 1.31922 * 122.32296 * 359.97438 * 25 24 23 27 27 C 1.46938 * 120.60296 * 207.68867 * 9 7 2 28 28 H 0.96997 * 119.99298 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58825 * 6.65534 * 10 9 7 30 30 H 1.08995 * 109.59316 * 246.22354 * 10 9 7 31 31 H 1.08996 * 109.49651 * 294.68555 * 11 10 9 32 32 H 1.08995 * 109.52358 * 174.60090 * 11 10 9 33 33 H 1.09004 * 109.46601 * 55.06469 * 17 15 12 34 34 H 1.08996 * 109.47395 * 295.06953 * 17 15 12 35 35 H 0.97004 * 119.99729 * 0.02562 * 18 17 15 36 36 H 1.08005 * 121.08751 * 0.02562 * 22 21 19 37 37 H 1.08004 * 120.01713 * 179.72773 * 23 22 21 38 38 H 1.08004 * 120.17060 * 180.02562 * 26 25 24 39 39 H 1.08996 * 109.55934 * 113.76454 * 27 9 7 40 40 H 1.08992 * 109.61956 * 353.33503 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3723 -2.3609 -0.3550 10 6 0.2276 -2.3337 -1.2757 11 6 0.5002 -3.3036 -2.4298 12 6 0.8176 -4.6891 -1.8624 13 9 1.0361 -5.5848 -2.9146 14 9 -0.2594 -5.1333 -1.0881 15 6 2.0735 -4.6098 -0.9914 16 1 2.9075 -4.2405 -1.5881 17 6 2.4089 -6.0014 -0.4511 18 7 3.6745 -5.9477 0.2846 19 6 4.1719 -7.0642 0.8524 20 8 3.5706 -8.1156 0.7538 21 6 5.4515 -7.0098 1.5969 22 6 5.9901 -8.1556 2.1970 23 6 7.1899 -8.0262 2.8765 24 7 7.7864 -6.8515 2.9427 25 7 7.2987 -5.7987 2.3955 26 6 6.1628 -5.8140 1.7248 27 6 1.8197 -3.6546 0.1791 28 1 -0.4849 0.8401 0.0004 29 1 0.0986 -1.3253 -1.6687 30 1 -0.6746 -2.6401 -0.7463 31 1 1.3488 -2.9460 -3.0128 32 1 -0.3804 -3.3655 -3.0693 33 1 2.5009 -6.7011 -1.2819 34 1 1.6141 -6.3332 0.2169 35 1 4.1547 -5.1085 0.3630 36 1 5.4860 -9.1086 2.1318 37 1 7.6347 -8.8857 3.3561 38 1 5.7842 -4.9067 1.2776 39 1 1.0475 -4.0684 0.8276 40 1 2.7407 -3.5179 0.7456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046979085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:46 Heat of formation + Delta-G solvation = -54.303949 kcal Electronic energy + Delta-G solvation = -27971.705352 eV Core-core repulsion = 23651.464962 eV Total energy + Delta-G solvation = -4320.240389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.62262 -46.57232 -41.51762 -39.70383 -37.49702 -35.29971 -33.69174 -33.14296 -32.59306 -30.92965 -30.28829 -26.73136 -25.37402 -25.07201 -24.62979 -22.59155 -21.66327 -21.13890 -19.69782 -18.66138 -18.00436 -17.17488 -16.88776 -16.72119 -16.36888 -15.86153 -15.63902 -15.44085 -15.28391 -15.15864 -14.80402 -14.18688 -13.90887 -13.80355 -13.61138 -13.35376 -13.21268 -12.99238 -12.88355 -12.31033 -11.79637 -11.74377 -11.66319 -11.36549 -11.30187 -10.90086 -10.78757 -10.72440 -10.60656 -10.56446 -10.51437 -10.13733 -10.01740 -9.97307 -9.75801 -9.31510 -8.67771 -6.97816 -6.00014 -3.44948 -0.04212 0.47544 2.45888 2.66814 3.26305 3.28796 3.35334 3.36541 3.68049 3.91271 4.06204 4.14053 4.25456 4.30287 4.44901 4.50801 4.56545 4.78638 4.90442 5.08991 5.19331 5.22052 5.31118 5.39459 5.43009 5.50702 5.68743 5.77428 5.84742 6.03905 6.10447 6.18695 6.21193 6.33332 6.57770 7.03224 7.12104 7.38384 7.59731 7.79016 8.19747 8.25663 8.96121 9.58609 10.13096 11.09094 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.003868 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.574822 B = 7237.797939 C = 9324.710651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.008 3.992 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.301 3.699 13 F -0.213 7.213 14 F -0.198 7.198 15 C -0.157 4.157 16 H 0.104 0.896 17 C 0.124 3.876 18 N -0.710 5.710 19 C 0.561 3.439 20 O -0.525 6.525 21 C -0.129 4.129 22 C -0.058 4.058 23 C 0.037 3.963 24 N -0.229 5.229 25 N -0.239 5.239 26 C 0.072 3.928 27 C 0.152 3.848 28 H 0.257 0.743 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.405 0.595 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.034 0.966 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -13.143 -0.183 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.194 7.194 14 F -0.180 7.180 15 C -0.179 4.179 16 H 0.122 0.878 17 C 0.001 3.999 18 N -0.362 5.362 19 C 0.346 3.654 20 O -0.402 6.402 21 C -0.144 4.144 22 C -0.088 4.088 23 C -0.127 4.127 24 N -0.071 5.071 25 N -0.080 5.080 26 C -0.093 4.093 27 C 0.024 3.976 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.241 0.759 36 H 0.181 0.819 37 H 0.198 0.802 38 H 0.195 0.805 39 H 0.052 0.948 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.062 -12.846 0.293 15.724 hybrid contribution -0.805 0.259 -0.595 1.035 sum 8.257 -12.587 -0.302 15.057 Atomic orbital electron populations 1.70027 1.05364 1.25899 1.52817 1.25082 0.95303 0.98672 1.00092 0.86203 0.79404 0.83575 0.77442 1.20067 1.21383 1.21552 1.19194 0.92858 0.84446 1.42817 0.91171 1.44103 1.35735 1.01274 1.50030 1.20855 0.89316 0.98331 0.87141 1.23276 1.03444 0.92787 1.02362 1.21004 0.84757 0.87720 0.80089 1.92960 1.95146 1.71684 1.59609 1.92970 1.58183 1.90900 1.75900 1.23009 0.97379 0.96610 1.00872 0.87793 1.21440 0.85046 0.96960 0.96498 1.45845 1.24713 1.11302 1.54314 1.17858 0.84101 0.84230 0.79214 1.90810 1.60032 1.29551 1.59787 1.21261 0.97090 0.95635 1.00402 1.22654 0.94692 0.99854 0.91636 1.24425 0.93138 0.98377 0.96770 1.72926 1.26354 0.96229 1.11587 1.73124 1.09540 1.20256 1.05078 1.24641 0.92082 0.98057 0.94492 1.20923 0.98953 0.86500 0.91188 0.93314 0.88038 0.94916 0.89514 0.90457 0.90475 0.90109 0.75880 0.81853 0.80215 0.80546 0.94849 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.22 11.19 55.49 0.62 -23.60 16 2 C 0.01 0.21 4.91 -17.43 -0.09 0.12 16 3 Si 0.90 20.11 29.59 -169.99 -5.03 15.08 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.26 -6.48 9.58 -15.06 -0.14 -6.62 16 8 H 0.07 1.66 7.89 -52.48 -0.41 1.24 16 9 N -0.59 -13.04 3.00 -172.31 -0.52 -13.56 16 10 C 0.17 3.66 5.11 -3.71 -0.02 3.64 16 11 C -0.18 -3.10 5.62 -26.61 -0.15 -3.25 16 12 C 0.30 4.98 1.63 -26.69 -0.04 4.94 16 13 F -0.21 -3.44 16.41 2.25 0.04 -3.40 16 14 F -0.20 -3.59 15.73 2.25 0.04 -3.56 16 15 C -0.16 -2.34 2.03 -90.50 -0.18 -2.53 16 16 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 17 C 0.12 1.67 4.83 -4.04 -0.02 1.65 16 18 N -0.71 -8.06 5.29 -61.16 -0.32 -8.38 16 19 C 0.56 6.80 7.80 -12.20 -0.10 6.71 16 20 O -0.53 -7.98 16.49 5.35 0.09 -7.89 16 21 C -0.13 -1.31 5.92 -104.58 -0.62 -1.93 16 22 C -0.06 -0.50 9.77 -38.78 -0.38 -0.87 16 23 C 0.04 0.30 11.30 -17.42 -0.20 0.10 16 24 N -0.23 -2.58 11.48 30.53 0.35 -2.23 16 25 N -0.24 -2.86 11.49 30.78 0.35 -2.51 16 26 C 0.07 0.72 10.84 -16.96 -0.18 0.53 16 27 C 0.15 2.71 5.40 -3.70 -0.02 2.69 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.10 2.44 6.04 -51.93 -0.31 2.13 16 30 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.06 7.63 -51.93 -0.40 0.66 16 34 H 0.08 1.18 7.97 -51.93 -0.41 0.77 16 35 H 0.40 3.80 5.85 -40.82 -0.24 3.56 16 36 H 0.16 1.14 7.80 -52.48 -0.41 0.73 16 37 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.18 1.33 6.53 -52.48 -0.34 0.98 16 39 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 40 H 0.06 1.06 7.14 -51.93 -0.37 0.69 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -30.68 340.21 -5.94 -36.63 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.55 Total: 3.13 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.14 Total: 5.17 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.49 Total: -50.28 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.07 Total: -6.96 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.68 -5.94 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046979085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.677 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds