Wall clock time and date at job start Sat Apr 11 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00583 * 2 1 4 4 H 1.48495 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46982 * 300.00332 * 3 2 1 6 6 H 1.48507 * 109.46698 * 59.99862 * 3 2 1 7 7 C 1.38811 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00359 * 197.36240 * 7 2 1 9 9 N 1.36941 * 120.00195 * 17.36420 * 7 2 1 10 10 C 1.46921 * 120.62809 * 27.65967 * 9 7 2 11 11 C 1.53198 * 108.77241 * 126.43595 * 10 9 7 12 12 C 1.53041 * 109.31165 * 54.63902 * 11 10 9 13 13 F 1.39895 * 109.46146 * 178.61589 * 12 11 10 14 14 F 1.39891 * 109.45025 * 58.64438 * 12 11 10 15 15 C 1.53041 * 109.53480 * 298.63141 * 12 11 10 16 16 H 1.09003 * 109.50246 * 301.38381 * 15 12 11 17 17 C 1.53000 * 109.49856 * 181.31484 * 15 12 11 18 18 N 1.46495 * 109.47461 * 175.06297 * 17 15 12 19 19 C 1.34775 * 120.00396 * 180.02562 * 18 17 15 20 20 O 1.21517 * 119.99813 * 0.02562 * 19 18 17 21 21 C 1.48135 * 120.00243 * 180.02562 * 19 18 17 22 22 C 1.40115 * 121.14513 * 179.97438 * 21 19 18 23 23 C 1.38499 * 117.82349 * 180.02562 * 22 21 19 24 24 N 1.31919 * 119.96907 * 0.02562 * 23 22 21 25 25 N 1.28277 * 122.51628 * 359.97438 * 24 23 22 26 26 C 1.31922 * 122.32296 * 359.97438 * 25 24 23 27 27 C 1.46938 * 120.60296 * 207.68867 * 9 7 2 28 28 H 0.96997 * 119.99298 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58825 * 6.65534 * 10 9 7 30 30 H 1.08995 * 109.59316 * 246.22354 * 10 9 7 31 31 H 1.08996 * 109.49651 * 294.68555 * 11 10 9 32 32 H 1.08995 * 109.52358 * 174.60090 * 11 10 9 33 33 H 1.09004 * 109.46601 * 55.06469 * 17 15 12 34 34 H 1.08996 * 109.47395 * 295.06953 * 17 15 12 35 35 H 0.97004 * 119.99729 * 0.02562 * 18 17 15 36 36 H 1.08005 * 121.08751 * 0.02562 * 22 21 19 37 37 H 1.08004 * 120.01713 * 179.72773 * 23 22 21 38 38 H 1.08004 * 120.17060 * 180.02562 * 26 25 24 39 39 H 1.08996 * 109.55934 * 113.76454 * 27 9 7 40 40 H 1.08992 * 109.61956 * 353.33503 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3723 -2.3609 -0.3550 10 6 0.2276 -2.3337 -1.2757 11 6 0.5002 -3.3036 -2.4298 12 6 0.8176 -4.6891 -1.8624 13 9 1.0361 -5.5848 -2.9146 14 9 -0.2594 -5.1333 -1.0881 15 6 2.0735 -4.6098 -0.9914 16 1 2.9075 -4.2405 -1.5881 17 6 2.4089 -6.0014 -0.4511 18 7 3.6745 -5.9477 0.2846 19 6 4.1719 -7.0642 0.8524 20 8 3.5706 -8.1156 0.7538 21 6 5.4515 -7.0098 1.5969 22 6 5.9901 -8.1556 2.1970 23 6 7.1899 -8.0262 2.8765 24 7 7.7864 -6.8515 2.9427 25 7 7.2987 -5.7987 2.3955 26 6 6.1628 -5.8140 1.7248 27 6 1.8197 -3.6546 0.1791 28 1 -0.4849 0.8401 0.0004 29 1 0.0986 -1.3253 -1.6687 30 1 -0.6746 -2.6401 -0.7463 31 1 1.3488 -2.9460 -3.0128 32 1 -0.3804 -3.3655 -3.0693 33 1 2.5009 -6.7011 -1.2819 34 1 1.6141 -6.3332 0.2169 35 1 4.1547 -5.1085 0.3630 36 1 5.4860 -9.1086 2.1318 37 1 7.6347 -8.8857 3.3561 38 1 5.7842 -4.9067 1.2776 39 1 1.0475 -4.0684 0.8276 40 1 2.7407 -3.5179 0.7456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046979085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:46 Heat of formation + Delta-G solvation = -74.503563 kcal Electronic energy + Delta-G solvation = -27972.581273 eV Core-core repulsion = 23651.464962 eV Total energy + Delta-G solvation = -4321.116310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.98918 -47.94314 -42.29068 -40.67904 -38.96371 -36.55272 -34.68519 -34.23355 -33.68618 -32.27093 -31.93920 -27.84771 -27.04881 -26.02507 -25.50362 -24.07068 -23.08686 -22.12590 -21.15117 -19.62491 -18.86305 -18.71090 -18.28876 -17.61579 -17.42296 -17.04198 -17.00333 -16.63407 -16.48484 -16.13934 -16.01197 -15.49706 -15.37445 -14.92724 -14.73713 -14.60054 -14.43877 -14.32027 -14.25323 -13.81118 -13.26910 -13.19295 -13.07547 -13.03811 -12.62313 -12.25946 -12.17035 -12.07171 -11.90048 -11.76406 -11.63127 -11.37847 -11.26637 -11.24512 -10.77447 -10.57639 -10.33170 -8.80374 -7.90688 -5.36745 -0.80664 -0.19346 1.50072 1.54367 1.56737 1.62649 1.71662 2.49924 2.53405 2.77612 3.01008 3.12087 3.19290 3.22949 3.26656 3.45430 3.48498 3.52044 3.61254 3.79653 3.90703 4.05839 4.24856 4.33973 4.48596 4.52039 4.57232 4.66053 4.72406 4.77603 4.83732 4.88760 5.01733 5.08121 5.16097 5.30846 5.60345 5.68006 6.21081 6.34544 6.86619 7.09194 7.52997 7.77084 8.28875 9.17536 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.003868 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.574822 B = 7237.797939 C = 9324.710651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.262 4.262 8 H 0.083 0.917 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.169 4.169 12 C 0.300 3.700 13 F -0.206 7.206 14 F -0.209 7.209 15 C -0.141 4.141 16 H 0.123 0.877 17 C 0.135 3.865 18 N -0.702 5.702 19 C 0.567 3.433 20 O -0.558 6.558 21 C -0.140 4.140 22 C -0.050 4.050 23 C 0.049 3.951 24 N -0.257 5.257 25 N -0.271 5.271 26 C 0.075 3.925 27 C 0.152 3.848 28 H 0.250 0.750 29 H 0.073 0.927 30 H 0.004 0.996 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.416 0.584 36 H 0.181 0.819 37 H 0.220 0.780 38 H 0.196 0.804 39 H 0.017 0.983 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.353 -14.381 -0.422 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.391 4.391 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.051 3.949 11 C -0.209 4.209 12 C 0.263 3.737 13 F -0.187 7.187 14 F -0.191 7.191 15 C -0.162 4.162 16 H 0.141 0.859 17 C 0.010 3.990 18 N -0.354 5.354 19 C 0.353 3.647 20 O -0.437 6.437 21 C -0.154 4.154 22 C -0.080 4.080 23 C -0.116 4.116 24 N -0.098 5.098 25 N -0.111 5.111 26 C -0.090 4.090 27 C 0.026 3.974 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.022 0.978 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.254 0.746 36 H 0.198 0.802 37 H 0.237 0.763 38 H 0.213 0.787 39 H 0.035 0.965 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.102 -14.083 0.056 17.933 hybrid contribution -1.441 0.533 -0.487 1.612 sum 9.661 -13.550 -0.431 16.647 Atomic orbital electron populations 1.70176 1.06796 1.25961 1.55093 1.25773 0.95865 1.01525 1.00953 0.85265 0.79038 0.80034 0.76418 1.18463 1.21989 1.22634 1.19607 0.93436 0.85216 1.40875 0.89976 1.44329 1.35564 1.02234 1.50633 1.20564 0.88440 0.97809 0.88133 1.23096 1.04733 0.92233 1.00798 1.21027 0.85075 0.87224 0.80330 1.92973 1.95081 1.71322 1.59316 1.92957 1.58918 1.90970 1.76222 1.22806 0.97140 0.96686 0.99546 0.85908 1.21203 0.85603 0.95709 0.96441 1.45716 1.24011 1.11860 1.53849 1.18059 0.84336 0.83650 0.78674 1.90797 1.61112 1.30702 1.61098 1.21135 0.96451 0.96593 1.01250 1.22958 0.94600 1.00028 0.90383 1.24994 0.92512 0.98409 0.95696 1.72834 1.27430 0.97161 1.12412 1.73063 1.10542 1.21184 1.06311 1.24868 0.91491 0.98698 0.93987 1.21014 0.99113 0.85075 0.92234 0.94039 0.90855 0.97819 0.88148 0.89101 0.90205 0.91406 0.74574 0.80199 0.76339 0.78720 0.96473 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.71 11.19 21.65 0.24 -51.46 16 2 C -0.05 -2.31 4.91 84.86 0.42 -1.90 16 3 Si 0.96 41.36 29.59 68.60 2.03 43.39 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.26 -12.61 9.58 84.03 0.81 -11.80 16 8 H 0.08 3.70 7.89 -2.91 -0.02 3.68 16 9 N -0.61 -26.46 3.00 -699.08 -2.09 -28.56 16 10 C 0.18 7.71 5.11 86.37 0.44 8.15 16 11 C -0.17 -5.66 5.62 30.67 0.17 -5.49 16 12 C 0.30 9.45 1.63 30.62 0.05 9.50 16 13 F -0.21 -6.17 16.41 44.97 0.74 -5.43 16 14 F -0.21 -7.47 15.73 44.97 0.71 -6.76 16 15 C -0.14 -3.90 2.03 -10.71 -0.02 -3.92 16 16 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 17 C 0.13 3.36 4.83 86.38 0.42 3.78 16 18 N -0.70 -14.39 5.29 -465.71 -2.46 -16.86 16 19 C 0.57 12.67 7.80 86.87 0.68 13.35 16 20 O -0.56 -16.11 16.49 -3.77 -0.06 -16.17 16 21 C -0.14 -2.55 5.92 -19.83 -0.12 -2.67 16 22 C -0.05 -0.72 9.77 22.79 0.22 -0.50 16 23 C 0.05 0.65 11.30 84.74 0.96 1.60 16 24 N -0.26 -5.36 11.48 -57.33 -0.66 -6.01 16 25 N -0.27 -6.13 11.49 -56.54 -0.65 -6.78 16 26 C 0.08 1.36 10.84 85.04 0.92 2.28 16 27 C 0.15 5.22 5.40 86.36 0.47 5.68 16 28 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.07 3.63 6.04 -2.39 -0.01 3.61 16 30 H 0.00 0.18 7.92 -2.39 -0.02 0.16 16 31 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.08 2.01 7.63 -2.38 -0.02 2.00 16 34 H 0.07 1.91 7.97 -2.39 -0.02 1.89 16 35 H 0.42 6.67 5.85 -92.71 -0.54 6.13 16 36 H 0.18 2.00 7.80 -2.91 -0.02 1.97 16 37 H 0.22 0.97 8.06 -2.91 -0.02 0.94 16 38 H 0.20 2.49 6.53 -2.91 -0.02 2.47 16 39 H 0.02 0.66 7.92 -2.39 -0.02 0.64 16 40 H 0.08 2.55 7.14 -2.39 -0.02 2.53 16 Total: -1.00 -66.87 340.21 3.75 -63.12 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.55 Total: 13.45 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.41 Total: 18.07 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -5.62 Total: -109.67 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.06 Total: -16.17 kcal Atomic # 9 Polarization: -13.63 SS G_CDS: 1.45 Total: -12.19 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -66.87 3.75 -63.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046979085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.386 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds