Wall clock time and date at job start Sat Apr 11 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99815 * 2 1 4 4 H 1.48498 * 109.46906 * 269.99897 * 3 2 1 5 5 H 1.48496 * 109.47218 * 30.00039 * 3 2 1 6 6 H 1.48503 * 109.46805 * 150.00102 * 3 2 1 7 7 C 1.38815 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00388 * 163.07181 * 7 2 1 9 9 N 1.36943 * 119.99631 * 343.08116 * 7 2 1 10 10 C 1.46929 * 120.62973 * 331.82050 * 9 7 2 11 11 C 1.53182 * 108.77707 * 233.61300 * 10 9 7 12 12 C 1.53046 * 109.31213 * 305.36706 * 11 10 9 13 13 F 1.39891 * 109.45974 * 301.34245 * 12 11 10 14 14 F 1.39901 * 109.44686 * 181.37953 * 12 11 10 15 15 C 1.53039 * 109.53932 * 61.36644 * 12 11 10 16 16 H 1.09004 * 109.49953 * 58.61229 * 15 12 11 17 17 C 1.52993 * 109.50033 * 178.68511 * 15 12 11 18 18 N 1.46496 * 109.47421 * 184.93459 * 17 15 12 19 19 C 1.34777 * 120.00332 * 179.97438 * 18 17 15 20 20 O 1.21511 * 119.99856 * 0.02562 * 19 18 17 21 21 C 1.48158 * 120.00207 * 179.97438 * 19 18 17 22 22 C 1.39717 * 120.18248 * 179.97438 * 21 19 18 23 23 C 1.38817 * 117.89608 * 180.02562 * 22 21 19 24 24 C 1.38575 * 118.07346 * 0.02562 * 23 22 21 25 25 N 1.32172 * 120.06096 * 359.97438 * 24 23 22 26 26 N 1.28351 * 122.30421 * 0.02562 * 25 24 23 27 27 C 1.46933 * 120.60427 * 151.84852 * 9 7 2 28 28 H 0.97005 * 120.00182 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58223 * 113.82341 * 10 9 7 30 30 H 1.09002 * 109.58561 * 353.40030 * 10 9 7 31 31 H 1.08999 * 109.50216 * 185.41868 * 11 10 9 32 32 H 1.09000 * 109.52835 * 65.33410 * 11 10 9 33 33 H 1.09000 * 109.47579 * 64.93187 * 17 15 12 34 34 H 1.09006 * 109.47292 * 304.93145 * 17 15 12 35 35 H 0.97005 * 120.00177 * 359.97438 * 18 17 15 36 36 H 1.08003 * 121.05028 * 0.02562 * 22 21 19 37 37 H 1.08009 * 120.96349 * 179.97438 * 23 22 21 38 38 H 1.07996 * 119.96649 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.61570 * 6.61529 * 27 9 7 40 40 H 1.09002 * 109.55781 * 246.19032 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2718 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2682 11 6 0.4981 -3.3187 2.4148 12 6 0.8127 -4.7005 1.8368 13 9 -0.2657 -5.1375 1.0603 14 9 1.0306 -5.6041 2.8824 15 6 2.0679 -4.6171 0.9653 16 1 2.9031 -4.2535 1.5640 17 6 2.4005 -6.0051 0.4145 18 7 3.6656 -5.9481 -0.3219 19 6 4.1605 -7.0613 -0.8985 20 8 3.5571 -8.1121 -0.8078 21 6 5.4397 -7.0035 -1.6437 22 6 5.9565 -8.1553 -2.2424 23 6 7.1585 -8.0472 -2.9285 24 6 7.7721 -6.8057 -2.9773 25 7 7.2127 -5.7668 -2.3819 26 7 6.1018 -5.8571 -1.7455 27 6 1.8147 -3.6527 -0.1978 28 1 -0.4851 0.8401 -0.0004 29 1 -0.6769 -2.6408 0.7372 30 1 0.0994 -1.3342 1.6687 31 1 -0.3823 -3.3838 3.0541 32 1 1.3476 -2.9672 3.0002 33 1 1.6045 -6.3306 -0.2553 34 1 2.4921 -6.7112 1.2399 35 1 4.1471 -5.1092 -0.3946 36 1 5.4372 -9.0998 -2.1737 37 1 7.6029 -8.9061 -3.4095 38 1 8.7080 -6.6869 -3.5031 39 1 2.7356 -3.5134 -0.7640 40 1 1.0412 -4.0604 -0.8487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046985453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:06 Heat of formation + Delta-G solvation = -54.712225 kcal Electronic energy + Delta-G solvation = -27959.250558 eV Core-core repulsion = 23638.992465 eV Total energy + Delta-G solvation = -4320.258093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.53443 -46.48432 -41.44911 -39.51393 -37.37945 -35.15078 -33.56411 -33.19667 -32.52823 -30.80989 -30.18259 -26.56330 -25.26810 -25.02402 -24.63119 -22.50582 -21.61318 -21.00653 -19.60639 -18.64571 -17.68902 -17.18575 -16.85888 -16.79499 -16.30933 -15.88151 -15.47829 -15.27756 -15.13897 -14.85952 -14.64695 -14.03525 -13.95134 -13.58444 -13.47370 -13.25018 -13.10981 -12.86705 -12.79205 -12.21776 -11.86121 -11.67342 -11.61538 -11.55802 -11.21527 -10.79169 -10.69307 -10.62785 -10.52438 -10.42973 -10.32530 -10.12480 -10.03835 -9.90316 -9.66890 -9.13211 -8.58633 -6.87015 -5.91122 -3.35612 0.12324 0.38346 2.44383 2.80155 3.33285 3.37197 3.40890 3.42972 3.57954 4.05036 4.16399 4.27411 4.32444 4.39561 4.57725 4.61458 4.67738 4.75392 4.89955 5.19487 5.28914 5.30014 5.40754 5.46200 5.53701 5.61894 5.69586 5.89003 5.96289 6.15688 6.27018 6.27861 6.35429 6.45524 6.70108 7.11710 7.32704 7.46298 7.70002 7.94329 8.22586 8.29683 9.06050 9.68162 10.23241 11.18191 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003886 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.961348 B = 7203.551739 C = 9283.379572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.301 3.699 13 F -0.199 7.199 14 F -0.213 7.213 15 C -0.156 4.156 16 H 0.104 0.896 17 C 0.123 3.877 18 N -0.697 5.697 19 C 0.574 3.426 20 O -0.531 6.531 21 C 0.027 3.973 22 C -0.066 4.066 23 C -0.123 4.123 24 C 0.053 3.947 25 N -0.238 5.238 26 N -0.206 5.206 27 C 0.151 3.849 28 H 0.256 0.744 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.416 0.584 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.178 0.822 39 H 0.068 0.932 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.457 -14.846 -2.151 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.180 7.180 14 F -0.195 7.195 15 C -0.178 4.178 16 H 0.122 0.878 17 C -0.001 4.001 18 N -0.348 5.348 19 C 0.357 3.643 20 O -0.406 6.406 21 C -0.119 4.119 22 C -0.096 4.096 23 C -0.152 4.152 24 C -0.109 4.109 25 N -0.081 5.081 26 N -0.053 5.053 27 C 0.024 3.976 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.253 0.747 36 H 0.181 0.819 37 H 0.176 0.824 38 H 0.195 0.805 39 H 0.086 0.914 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.912 -13.827 -1.702 17.696 hybrid contribution 0.540 -0.487 -0.397 0.828 sum 11.452 -14.313 -2.098 18.450 Atomic orbital electron populations 1.70017 1.05343 1.25879 1.53126 1.25080 0.95292 0.98611 1.00227 0.86275 0.79205 0.83306 0.77865 1.21236 1.21496 1.20277 1.19180 0.92743 0.84387 1.42710 0.91187 1.44087 1.35723 1.01471 1.49839 1.20842 0.89376 0.98123 0.87253 1.23274 1.03383 0.92916 1.02279 1.21020 0.84774 0.87563 0.80225 1.92964 1.58100 1.91108 1.75820 1.92957 1.95165 1.71238 1.60090 1.22989 0.97276 0.96694 1.00813 0.87765 1.21448 0.85261 0.96960 0.96432 1.45824 1.24168 1.12064 1.52768 1.17526 0.83330 0.84309 0.79177 1.90807 1.59511 1.29693 1.60626 1.22889 0.97428 0.92447 0.99135 1.22457 0.94740 1.00074 0.92285 1.22471 0.95078 0.99746 0.97893 1.24561 1.00708 0.90087 0.95570 1.73202 1.03181 1.27145 1.04527 1.73289 1.01235 1.21832 1.08978 1.20938 0.99094 0.86329 0.91224 0.93368 0.94954 0.88120 0.90526 0.89525 0.90178 0.90548 0.74671 0.81927 0.82419 0.80452 0.91360 0.94936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 11.20 55.49 0.62 -24.43 16 2 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 3 Si 0.90 20.85 29.59 -169.99 -5.03 15.83 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -13.84 2.99 -172.31 -0.52 -14.36 16 10 C 0.17 3.84 5.10 -3.71 -0.02 3.82 16 11 C -0.18 -3.27 5.62 -26.61 -0.15 -3.42 16 12 C 0.30 5.31 1.63 -26.69 -0.04 5.27 16 13 F -0.20 -3.78 15.73 2.25 0.04 -3.75 16 14 F -0.21 -3.65 16.41 2.25 0.04 -3.61 16 15 C -0.16 -2.59 2.03 -90.50 -0.18 -2.77 16 16 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 17 C 0.12 1.85 4.83 -4.05 -0.02 1.84 16 18 N -0.70 -9.80 5.32 -61.15 -0.33 -10.13 16 19 C 0.57 8.15 7.82 -12.19 -0.10 8.06 16 20 O -0.53 -8.64 16.39 5.36 0.09 -8.55 16 21 C 0.03 0.33 6.83 -82.83 -0.57 -0.23 16 22 C -0.07 -0.59 9.73 -38.81 -0.38 -0.97 16 23 C -0.12 -0.76 10.20 -39.24 -0.40 -1.16 16 24 C 0.05 0.40 11.31 -17.28 -0.20 0.20 16 25 N -0.24 -2.81 11.51 30.58 0.35 -2.46 16 26 N -0.21 -2.72 10.75 33.32 0.36 -2.36 16 27 C 0.15 2.97 5.40 -3.71 -0.02 2.95 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 30 H 0.10 2.51 6.06 -51.93 -0.31 2.20 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.28 7.97 -51.93 -0.41 0.87 16 34 H 0.08 1.15 7.63 -51.93 -0.40 0.76 16 35 H 0.42 5.65 7.06 -40.82 -0.29 5.36 16 36 H 0.16 1.24 7.72 -52.48 -0.41 0.83 16 37 H 0.16 0.36 8.06 -52.48 -0.42 -0.06 16 38 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.07 1.28 7.14 -51.93 -0.37 0.91 16 40 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -31.29 342.35 -6.19 -37.48 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.67 Total: 4.41 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -2.30 Total: 6.78 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.49 Total: -53.74 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.07 Total: -7.36 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.29 -6.19 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046985453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.233 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds