Wall clock time and date at job start Sat Apr 11 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46749 * 2 1 4 4 N 1.34228 * 126.28415 * 264.99998 * 3 2 1 5 5 H 0.97003 * 125.73700 * 0.03918 * 4 3 2 6 6 N 1.39931 * 108.52552 * 180.02562 * 4 3 2 7 7 C 1.30536 * 108.89639 * 359.75605 * 6 4 3 8 8 Cl 1.73593 * 126.00980 * 180.26155 * 7 6 4 9 9 C 1.38075 * 126.27770 * 85.00296 * 3 2 1 10 10 C 1.47382 * 126.42578 * 359.96655 * 9 3 2 11 11 O 1.21603 * 120.00407 * 89.99053 * 10 9 3 12 12 N 1.34779 * 119.99682 * 269.99853 * 10 9 3 13 13 C 1.47015 * 125.64856 * 179.97438 * 12 10 9 14 14 C 1.54324 * 107.27460 * 178.92134 * 13 12 10 15 15 H 1.08998 * 110.87639 * 96.24263 * 14 13 12 16 16 C 1.53003 * 110.72342 * 219.44679 * 14 13 12 17 17 C 1.55165 * 102.93877 * 337.80539 * 14 13 12 18 18 H 1.08994 * 111.00702 * 277.39167 * 17 14 13 19 19 N 1.46499 * 111.00257 * 153.57654 * 17 14 13 20 20 C 1.36931 * 120.00122 * 155.00211 * 19 17 14 21 21 H 1.08002 * 120.00098 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99535 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 180.27849 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71949 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72145 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72253 * 24 22 20 28 28 C 1.47422 * 125.64616 * 359.97438 * 12 10 9 29 29 H 1.08993 * 109.47654 * 59.99747 * 1 2 3 30 30 H 1.09006 * 109.46635 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47025 * 299.99165 * 1 2 3 32 32 H 1.09000 * 109.47406 * 240.00462 * 2 1 3 33 33 H 1.08993 * 109.47654 * 120.00253 * 2 1 3 34 34 H 1.08999 * 109.88519 * 59.49982 * 13 12 10 35 35 H 1.09003 * 110.01319 * 298.40916 * 13 12 10 36 36 H 1.08993 * 109.47580 * 173.51811 * 16 14 13 37 37 H 1.08998 * 109.47057 * 293.52100 * 16 14 13 38 38 H 1.09008 * 109.47056 * 53.51467 * 16 14 13 39 39 H 0.97001 * 119.99790 * 334.99728 * 19 17 14 40 40 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 41 41 H 1.08996 * 110.37226 * 85.31244 * 28 12 10 42 42 H 1.08994 * 110.37138 * 322.98291 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3859 2.1383 -1.0779 5 1 2.3614 1.8294 -1.9971 6 7 2.7955 3.4070 -0.6527 7 6 2.6923 3.4710 0.6470 8 17 3.0780 4.8452 1.6351 9 6 2.2131 2.2234 1.1089 10 6 1.9509 1.8514 2.5106 11 8 2.8315 1.3476 3.1810 12 7 0.7348 2.0693 3.0495 13 6 0.3384 1.7476 4.4281 14 6 -1.1279 2.1970 4.6000 15 1 -1.8109 1.3619 4.4445 16 6 -1.3447 2.8212 5.9800 17 6 -1.2984 3.2609 3.4834 18 1 -0.9210 4.2309 3.8071 19 7 -2.6978 3.3593 3.0612 20 6 -3.1643 4.5189 2.5020 21 1 -2.5005 5.3608 2.3718 22 6 -4.4904 4.6124 2.1024 23 7 -5.2992 3.5861 2.2606 24 14 -5.1247 6.1916 1.3324 25 1 -5.6476 7.0858 2.3964 26 1 -4.0172 6.8718 0.6141 27 1 -6.2138 5.8727 0.3745 28 6 -0.4180 2.6698 2.3539 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.9753 2.2837 5.1317 35 1 0.4195 0.6741 4.5988 36 1 -2.3517 3.2341 6.0380 37 1 -1.2203 2.0575 6.7477 38 1 -0.6162 3.6167 6.1375 39 1 -3.2939 2.6030 3.1777 40 1 -6.2258 3.6513 1.9810 41 1 -0.9685 1.9069 1.8035 42 1 -0.0854 3.4592 1.6800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054727662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:38 Heat of formation + Delta-G solvation = 39.712417 kcal Electronic energy + Delta-G solvation = -26408.234571 eV Core-core repulsion = 22643.867718 eV Total energy + Delta-G solvation = -3764.366853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69633 -39.50381 -37.40931 -36.88572 -34.37522 -34.06353 -32.57318 -31.42720 -30.70801 -29.66272 -27.52227 -26.35629 -24.22406 -23.99132 -22.38297 -22.01048 -21.00242 -19.90380 -18.97814 -17.67094 -17.23198 -16.61257 -16.05887 -15.45096 -15.18198 -15.14358 -14.78588 -14.34229 -13.89449 -13.81874 -13.60091 -13.10132 -12.98404 -12.90821 -12.72660 -12.45790 -12.14872 -12.00408 -11.84821 -11.71913 -11.50438 -11.30215 -11.11055 -11.00704 -10.82052 -10.72373 -10.62057 -10.24538 -9.96837 -9.88753 -9.71827 -9.57858 -9.04496 -8.84792 -8.32836 -7.10385 -5.87439 -3.17637 1.36715 1.40429 2.08398 2.67675 2.75147 3.35334 3.38377 3.44711 3.45435 4.24237 4.49450 4.54360 4.68821 4.91666 4.98199 5.12885 5.15558 5.22100 5.26450 5.33712 5.54675 5.64062 5.64690 5.71871 5.74453 5.83462 5.83990 5.91318 6.02014 6.11172 6.23570 6.28556 6.41012 6.50154 6.55589 6.63825 6.80154 6.87445 7.13105 7.62841 7.77428 8.29782 8.36315 9.42614 9.95747 10.31013 11.34419 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.004520 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.257532 B = 6192.943673 C = 6716.341332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.067 4.067 3 C 0.146 3.854 4 N -0.446 5.446 5 H 0.447 0.553 6 N -0.276 5.276 7 C 0.161 3.839 8 Cl 0.021 6.979 9 C -0.256 4.256 10 C 0.610 3.390 11 O -0.543 6.543 12 N -0.600 5.600 13 C 0.117 3.883 14 C -0.115 4.115 15 H 0.084 0.916 16 C -0.134 4.134 17 C 0.177 3.823 18 H 0.069 0.931 19 N -0.708 5.708 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.291 1.291 28 C 0.074 3.926 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.448 -7.026 -2.972 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 C 0.014 3.986 4 N -0.155 5.155 5 H 0.293 0.707 6 N -0.102 5.102 7 C -0.031 4.031 8 Cl 0.048 6.952 9 C -0.271 4.271 10 C 0.396 3.604 11 O -0.420 6.420 12 N -0.333 5.333 13 C -0.006 4.006 14 C -0.135 4.135 15 H 0.102 0.898 16 C -0.192 4.192 17 C 0.065 3.935 18 H 0.087 0.913 19 N -0.348 5.348 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.577 5.577 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.217 1.217 28 C -0.051 4.051 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.277 -6.338 -3.658 16.043 hybrid contribution -0.795 0.303 -0.348 0.920 sum 13.482 -6.035 -4.006 15.304 Atomic orbital electron populations 1.21899 0.92510 1.03117 1.03801 1.20404 0.97603 0.87887 1.04693 1.21412 0.95855 0.95370 0.85985 1.45787 1.51648 1.09185 1.08903 0.70672 1.77137 1.23381 0.98869 1.10783 1.22515 1.00182 0.89913 0.90528 1.98420 1.92414 1.39233 1.65093 1.19671 1.18400 0.94445 0.94633 1.16721 0.80971 0.78091 0.84644 1.90761 1.44288 1.44659 1.62329 1.48424 1.10963 1.60354 1.13545 1.22004 0.95604 1.00149 0.82869 1.22532 0.94245 0.99695 0.96998 0.89770 1.21661 1.02771 0.99957 0.94771 1.21376 0.86486 0.95781 0.89898 0.91297 1.42275 1.04201 1.15658 1.72631 1.19248 0.93854 0.91864 1.32694 0.91009 1.24731 0.96353 0.97608 1.01675 1.69658 1.05449 1.29723 1.52890 0.86227 0.78462 0.82909 0.78829 1.21575 1.20654 1.21749 1.23549 0.86115 0.97362 0.98103 0.92101 0.91117 0.90874 0.89754 0.88491 0.91461 0.91829 0.91339 0.93233 0.92887 0.77889 0.93390 0.91109 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.89 37.16 0.37 -1.16 16 2 C -0.07 -0.61 6.27 -27.88 -0.17 -0.78 16 3 C 0.15 1.75 6.55 -81.61 -0.53 1.22 16 4 N -0.45 -4.87 7.28 33.86 0.25 -4.62 16 5 H 0.45 3.08 8.96 -182.72 -1.64 1.44 16 6 N -0.28 -3.94 12.64 33.18 0.42 -3.52 16 7 C 0.16 2.48 7.89 -16.90 -0.13 2.35 16 8 Cl 0.02 0.30 29.19 -51.86 -1.51 -1.21 16 9 C -0.26 -3.87 4.78 -105.03 -0.50 -4.37 16 10 C 0.61 10.11 7.29 -12.54 -0.09 10.02 16 11 O -0.54 -10.37 17.43 5.27 0.09 -10.28 16 12 N -0.60 -9.45 3.33 -171.80 -0.57 -10.02 16 13 C 0.12 1.69 6.46 -3.07 -0.02 1.67 16 14 C -0.11 -1.73 3.20 -88.78 -0.28 -2.01 16 15 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 16 C -0.13 -1.86 9.16 37.16 0.34 -1.52 16 17 C 0.18 3.23 3.16 -65.76 -0.21 3.02 16 18 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 19 N -0.71 -16.08 5.24 -51.34 -0.27 -16.34 16 20 C -0.25 -6.35 9.96 -15.06 -0.15 -6.50 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -26.47 13.06 55.49 0.72 -25.74 16 24 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.07 1.26 6.16 -2.52 -0.02 1.24 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.90 5.64 -51.93 -0.29 0.61 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.70 8.06 -51.92 -0.42 0.29 16 39 H 0.39 9.33 7.76 -40.82 -0.32 9.01 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.21 5.92 -51.93 -0.31 0.91 16 42 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -31.31 366.18 -8.99 -40.29 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.11 Total: 6.54 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.50 Total: 2.88 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.55 Total: -60.25 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.51 Total: -1.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.31 -8.99 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054727662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.006 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds