Wall clock time and date at job start Sat Apr 11 2020 01:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30415 * 125.97303 * 2 1 4 4 N 1.39925 * 108.95995 * 180.24233 * 3 2 1 5 5 C 1.46500 * 125.74849 * 179.71693 * 4 3 2 6 6 C 1.34346 * 108.50103 * 359.73964 * 4 3 2 7 7 Cl 1.73601 * 126.32016 * 180.02562 * 6 4 3 8 8 C 1.38280 * 107.36054 * 359.97438 * 6 4 3 9 9 C 1.47301 * 126.43641 * 179.97438 * 8 6 4 10 10 O 1.21622 * 119.99728 * 90.02387 * 9 8 6 11 11 N 1.34777 * 120.00119 * 270.02746 * 9 8 6 12 12 C 1.47015 * 125.64881 * 179.97438 * 11 9 8 13 13 C 1.54324 * 107.27460 * 178.96382 * 12 11 9 14 14 H 1.08998 * 110.87639 * 96.24263 * 13 12 11 15 15 C 1.53003 * 110.72342 * 219.44679 * 13 12 11 16 16 C 1.55165 * 102.93877 * 337.80539 * 13 12 11 17 17 H 1.08994 * 111.00702 * 277.39167 * 16 13 12 18 18 N 1.46499 * 111.00257 * 153.57654 * 16 13 12 19 19 C 1.36931 * 120.00122 * 155.00211 * 18 16 13 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47422 * 125.64591 * 0.02562 * 11 9 8 28 28 H 1.08997 * 109.47326 * 270.19177 * 1 2 3 29 29 H 1.09003 * 109.47612 * 30.19202 * 1 2 3 30 30 H 1.09005 * 109.47274 * 150.19137 * 1 2 3 31 31 H 1.08993 * 109.47083 * 270.02491 * 5 4 3 32 32 H 1.08994 * 109.47544 * 30.03186 * 5 4 3 33 33 H 1.09003 * 109.46605 * 150.02739 * 5 4 3 34 34 H 1.08999 * 109.88519 * 59.54230 * 12 11 9 35 35 H 1.09003 * 110.01319 * 298.45164 * 12 11 9 36 36 H 1.08993 * 109.47580 * 173.51811 * 15 13 12 37 37 H 1.08998 * 109.47057 * 293.52100 * 15 13 12 38 38 H 1.09008 * 109.47056 * 53.51467 * 15 13 12 39 39 H 0.97001 * 119.99790 * 334.99728 * 18 16 13 40 40 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 41 41 H 1.08996 * 110.37226 * 85.26996 * 27 11 9 42 42 H 1.08994 * 110.37138 * 322.94043 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0554 0.0000 4 7 3.6110 0.6460 -0.0056 5 6 4.7773 1.5326 -0.0133 6 6 3.6459 -0.6970 -0.0033 7 17 5.0709 -1.6885 -0.0076 8 6 2.3373 -1.1437 0.0044 9 6 1.8922 -2.5479 0.0088 10 8 1.7137 -3.1258 1.0639 11 7 1.6829 -3.1921 -1.1564 12 6 1.2407 -4.5871 -1.2967 13 6 1.1137 -4.8779 -2.8069 14 1 2.0151 -5.3585 -3.1871 15 6 -0.1178 -5.7405 -3.0905 16 6 0.9456 -3.4626 -3.4203 17 1 -0.0903 -3.1296 -3.3564 18 7 1.4197 -3.4313 -4.8061 19 6 0.9245 -2.4991 -5.6783 20 1 0.1846 -1.7866 -5.3445 21 6 1.3733 -2.4697 -6.9915 22 7 2.2754 -3.3376 -7.3982 23 14 0.7034 -1.1930 -8.1792 24 1 -0.4937 -1.7381 -8.8684 25 1 0.3275 0.0321 -7.4288 26 1 1.7437 -0.8580 -9.1846 27 6 1.8605 -2.6149 -2.5012 28 1 -0.3634 0.0034 1.0276 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3634 -0.8917 -0.5109 31 1 5.0613 1.7505 -1.0427 32 1 4.5308 2.4619 0.5001 33 1 5.6078 1.0448 0.4972 34 1 0.2740 -4.7202 -0.8109 35 1 1.9749 -5.2579 -0.8505 36 1 -0.2533 -5.8375 -4.1676 37 1 0.0216 -6.7283 -2.6514 38 1 -0.9992 -5.2701 -2.6543 39 1 2.0846 -4.0709 -5.1058 40 1 2.5893 -3.3168 -8.3158 41 1 2.9002 -2.7012 -2.8169 42 1 1.5456 -1.5715 -2.5109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054946330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:39 Heat of formation + Delta-G solvation = 50.503898 kcal Electronic energy + Delta-G solvation = -26123.252645 eV Core-core repulsion = 22359.353745 eV Total energy + Delta-G solvation = -3763.898900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57437 -39.49966 -37.40424 -37.14760 -34.26733 -34.05213 -32.47193 -30.78109 -30.49565 -29.61104 -27.52570 -26.75587 -25.54894 -23.97611 -22.49395 -21.26982 -20.52129 -19.87303 -19.15288 -17.45313 -17.22232 -16.52538 -16.04486 -15.79936 -15.39231 -14.92278 -14.29548 -14.00823 -13.71068 -13.62332 -13.44692 -13.08322 -13.00219 -12.91791 -12.86354 -12.69430 -12.45022 -12.42581 -11.93018 -11.89323 -11.80934 -11.61384 -11.12047 -11.02686 -10.87118 -10.73759 -10.62068 -10.25111 -9.96736 -9.87246 -9.70816 -9.39430 -9.03524 -8.71295 -8.31834 -7.09829 -5.86755 -3.17120 1.15477 1.32325 2.23543 2.32950 2.70969 3.33844 3.38178 3.44304 3.44986 4.14878 4.50170 4.62923 4.79518 4.85263 4.95297 5.11760 5.13615 5.16238 5.23319 5.30147 5.53306 5.55335 5.64417 5.67538 5.75552 5.79568 5.84788 5.95506 6.03765 6.21182 6.23775 6.26405 6.39625 6.41683 6.48736 6.57123 6.64610 6.87463 7.31432 7.62102 7.78790 8.30370 8.37548 9.42928 9.96623 10.31661 11.35193 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.004395 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.532085 B = 6369.619610 C = 7400.694591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.122 3.878 3 N -0.273 5.273 4 N -0.354 5.354 5 C 0.093 3.907 6 C 0.159 3.841 7 Cl 0.011 6.989 8 C -0.245 4.245 9 C 0.609 3.391 10 O -0.542 6.542 11 N -0.601 5.601 12 C 0.117 3.883 13 C -0.115 4.115 14 H 0.084 0.916 15 C -0.133 4.133 16 C 0.178 3.822 17 H 0.069 0.931 18 N -0.709 5.709 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.288 1.288 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.076 3.924 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 4.663 15.233 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 N -0.097 5.097 4 N -0.136 5.136 5 C -0.047 4.047 6 C 0.002 3.998 7 Cl 0.039 6.961 8 C -0.261 4.261 9 C 0.395 3.605 10 O -0.420 6.420 11 N -0.334 5.334 12 C -0.006 4.006 13 C -0.135 4.135 14 H 0.102 0.898 15 C -0.191 4.191 16 C 0.065 3.935 17 H 0.087 0.913 18 N -0.348 5.348 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.207 1.207 26 H -0.218 1.218 27 C -0.049 4.049 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.658 5.809 15.718 16.967 hybrid contribution 0.482 -0.283 -0.908 1.066 sum 3.140 5.526 14.811 16.117 Atomic orbital electron populations 1.20305 0.85335 1.04261 1.03671 1.22268 0.97166 0.88242 0.96793 1.77254 0.84740 1.21510 1.26170 1.48300 1.06634 1.02594 1.56090 1.22058 0.83757 0.94426 1.04484 1.21867 0.89784 0.84148 1.04021 1.98433 1.35426 1.65575 1.96678 1.19687 0.90313 0.95163 1.20921 1.16718 0.77204 0.83975 0.82572 1.90764 1.52691 1.67854 1.30686 1.48437 1.65368 1.13343 1.06229 1.21999 0.99703 0.82020 0.96857 1.22535 0.99883 0.98123 0.92980 0.89788 1.21657 0.96406 0.98337 1.02698 1.21368 0.95964 0.90914 0.85212 0.91272 1.42289 1.49417 1.39087 1.04040 1.19238 1.18731 1.08889 0.90852 0.91001 1.24745 0.99205 0.99113 0.97360 1.69662 1.33058 1.37858 1.17107 0.86214 0.77993 0.81048 0.81065 1.21565 1.20677 1.21756 1.23480 1.01859 0.99102 0.80506 0.89717 0.89869 0.89869 0.89611 0.88328 0.89131 0.91423 0.91881 0.91339 0.93239 0.92882 0.77873 0.93371 0.91482 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.28 36.00 0.37 -0.53 16 2 C 0.12 1.79 7.26 -82.02 -0.60 1.19 16 3 N -0.27 -3.97 12.49 33.90 0.42 -3.55 16 4 N -0.35 -4.61 3.98 -64.32 -0.26 -4.87 16 5 C 0.09 0.76 11.28 59.85 0.68 1.43 16 6 C 0.16 2.29 7.54 -16.44 -0.12 2.17 16 7 Cl 0.01 0.14 28.56 -51.86 -1.48 -1.34 16 8 C -0.24 -3.90 4.78 -105.02 -0.50 -4.40 16 9 C 0.61 10.49 7.23 -12.58 -0.09 10.39 16 10 O -0.54 -10.65 17.43 5.26 0.09 -10.56 16 11 N -0.60 -9.84 3.33 -171.83 -0.57 -10.41 16 12 C 0.12 1.74 6.46 -3.07 -0.02 1.73 16 13 C -0.12 -1.78 3.20 -88.78 -0.28 -2.06 16 14 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 15 C -0.13 -1.85 9.16 37.16 0.34 -1.51 16 16 C 0.18 3.27 3.16 -65.76 -0.21 3.07 16 17 H 0.07 1.29 8.00 -51.93 -0.42 0.88 16 18 N -0.71 -16.37 5.24 -51.34 -0.27 -16.64 16 19 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 23 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.08 1.34 6.37 -2.52 -0.02 1.32 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.99 8.01 -51.93 -0.42 0.57 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.58 7.77 -51.93 -0.40 0.17 16 34 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.69 8.06 -51.92 -0.42 0.27 16 39 H 0.39 9.56 7.76 -40.82 -0.32 9.25 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -31.82 371.48 -7.58 -39.40 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.12 Total: 5.95 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.70 Total: 5.95 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.05 Total: -61.51 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.48 Total: -1.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.82 -7.58 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054946330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.908 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds