Wall clock time and date at job start Sat Apr 11 2020 01:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30415 * 125.97303 * 2 1 4 4 N 1.39925 * 108.95995 * 180.24233 * 3 2 1 5 5 C 1.46500 * 125.74849 * 179.71693 * 4 3 2 6 6 C 1.34346 * 108.50103 * 359.73964 * 4 3 2 7 7 Cl 1.73601 * 126.32016 * 180.02562 * 6 4 3 8 8 C 1.38280 * 107.36054 * 359.97438 * 6 4 3 9 9 C 1.47301 * 126.43641 * 179.97438 * 8 6 4 10 10 O 1.21622 * 119.99728 * 90.02387 * 9 8 6 11 11 N 1.34777 * 120.00119 * 270.02746 * 9 8 6 12 12 C 1.47015 * 125.64881 * 179.97438 * 11 9 8 13 13 C 1.54324 * 107.27460 * 178.96382 * 12 11 9 14 14 H 1.08998 * 110.87639 * 96.24263 * 13 12 11 15 15 C 1.53003 * 110.72342 * 219.44679 * 13 12 11 16 16 C 1.55165 * 102.93877 * 337.80539 * 13 12 11 17 17 H 1.08994 * 111.00702 * 277.39167 * 16 13 12 18 18 N 1.46499 * 111.00257 * 153.57654 * 16 13 12 19 19 C 1.36931 * 120.00122 * 155.00211 * 18 16 13 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47422 * 125.64591 * 0.02562 * 11 9 8 28 28 H 1.08997 * 109.47326 * 270.19177 * 1 2 3 29 29 H 1.09003 * 109.47612 * 30.19202 * 1 2 3 30 30 H 1.09005 * 109.47274 * 150.19137 * 1 2 3 31 31 H 1.08993 * 109.47083 * 270.02491 * 5 4 3 32 32 H 1.08994 * 109.47544 * 30.03186 * 5 4 3 33 33 H 1.09003 * 109.46605 * 150.02739 * 5 4 3 34 34 H 1.08999 * 109.88519 * 59.54230 * 12 11 9 35 35 H 1.09003 * 110.01319 * 298.45164 * 12 11 9 36 36 H 1.08993 * 109.47580 * 173.51811 * 15 13 12 37 37 H 1.08998 * 109.47057 * 293.52100 * 15 13 12 38 38 H 1.09008 * 109.47056 * 53.51467 * 15 13 12 39 39 H 0.97001 * 119.99790 * 334.99728 * 18 16 13 40 40 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 41 41 H 1.08996 * 110.37226 * 85.26996 * 27 11 9 42 42 H 1.08994 * 110.37138 * 322.94043 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0554 0.0000 4 7 3.6110 0.6460 -0.0056 5 6 4.7773 1.5326 -0.0133 6 6 3.6459 -0.6970 -0.0033 7 17 5.0709 -1.6885 -0.0076 8 6 2.3373 -1.1437 0.0044 9 6 1.8922 -2.5479 0.0088 10 8 1.7137 -3.1258 1.0639 11 7 1.6829 -3.1921 -1.1564 12 6 1.2407 -4.5871 -1.2967 13 6 1.1137 -4.8779 -2.8069 14 1 2.0151 -5.3585 -3.1871 15 6 -0.1178 -5.7405 -3.0905 16 6 0.9456 -3.4626 -3.4203 17 1 -0.0903 -3.1296 -3.3564 18 7 1.4197 -3.4313 -4.8061 19 6 0.9245 -2.4991 -5.6783 20 1 0.1846 -1.7866 -5.3445 21 6 1.3733 -2.4697 -6.9915 22 7 2.2754 -3.3376 -7.3982 23 14 0.7034 -1.1930 -8.1792 24 1 -0.4937 -1.7381 -8.8684 25 1 0.3275 0.0321 -7.4288 26 1 1.7437 -0.8580 -9.1846 27 6 1.8605 -2.6149 -2.5012 28 1 -0.3634 0.0034 1.0276 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3634 -0.8917 -0.5109 31 1 5.0613 1.7505 -1.0427 32 1 4.5308 2.4619 0.5001 33 1 5.6078 1.0448 0.4972 34 1 0.2740 -4.7202 -0.8109 35 1 1.9749 -5.2579 -0.8505 36 1 -0.2533 -5.8375 -4.1676 37 1 0.0216 -6.7283 -2.6514 38 1 -0.9992 -5.2701 -2.6543 39 1 2.0846 -4.0709 -5.1058 40 1 2.5893 -3.3168 -8.3158 41 1 2.9002 -2.7012 -2.8169 42 1 1.5456 -1.5715 -2.5109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054946330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:38 Heat of formation + Delta-G solvation = 30.370836 kcal Electronic energy + Delta-G solvation = -26124.125680 eV Core-core repulsion = 22359.353745 eV Total energy + Delta-G solvation = -3764.771935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64975 -40.84940 -38.83388 -38.20263 -35.84714 -35.22255 -33.90246 -32.51881 -31.58586 -30.53186 -29.14636 -27.86874 -26.56582 -25.81549 -23.74216 -22.62656 -21.65833 -21.24367 -20.36627 -19.12510 -18.62231 -17.71983 -17.38966 -16.87575 -16.69355 -16.38653 -15.79689 -15.37776 -15.23222 -14.63116 -14.50738 -14.46590 -14.39956 -14.23960 -13.91754 -13.74032 -13.59401 -13.31443 -13.23383 -13.03827 -12.91265 -12.86459 -12.83451 -12.81049 -12.23304 -12.13409 -12.00575 -11.93580 -11.69619 -11.39522 -11.15540 -10.92214 -10.40362 -9.82794 -9.70580 -9.02326 -7.92925 -5.21978 0.09194 0.24095 1.12506 1.38446 1.41200 1.50539 1.50928 1.58761 2.04807 2.57980 3.14345 3.38564 3.49138 3.68155 3.82336 3.92246 3.97902 4.14772 4.18432 4.21906 4.26945 4.37297 4.49113 4.54092 4.61851 4.67188 4.70938 4.72533 4.84343 4.90614 4.93953 5.12907 5.14727 5.20991 5.28078 5.38465 5.45926 5.50366 5.57405 6.25285 6.28001 6.42181 7.03180 7.36177 8.07357 8.31918 9.29892 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.004395 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.532085 B = 6369.619610 C = 7400.694591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.114 3.886 3 N -0.286 5.286 4 N -0.349 5.349 5 C 0.080 3.920 6 C 0.154 3.846 7 Cl 0.022 6.978 8 C -0.277 4.277 9 C 0.615 3.385 10 O -0.569 6.569 11 N -0.598 5.598 12 C 0.118 3.882 13 C -0.104 4.104 14 H 0.078 0.922 15 C -0.128 4.128 16 C 0.174 3.826 17 H 0.070 0.930 18 N -0.718 5.718 19 C -0.239 4.239 20 H 0.078 0.922 21 C -0.067 4.067 22 N -0.966 5.966 23 Si 0.964 3.036 24 H -0.287 1.287 25 H -0.271 1.271 26 H -0.299 1.299 27 C 0.095 3.905 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.377 0.623 40 H 0.250 0.750 41 H 0.053 0.947 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 5.404 16.217 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 N -0.110 5.110 4 N -0.130 5.130 5 C -0.058 4.058 6 C -0.004 4.004 7 Cl 0.050 6.950 8 C -0.293 4.293 9 C 0.402 3.598 10 O -0.448 6.448 11 N -0.330 5.330 12 C -0.004 4.004 13 C -0.124 4.124 14 H 0.097 0.903 15 C -0.185 4.185 16 C 0.063 3.937 17 H 0.088 0.912 18 N -0.356 5.356 19 C -0.370 4.370 20 H 0.096 0.904 21 C -0.260 4.260 22 N -0.616 5.616 23 Si 0.794 3.206 24 H -0.214 1.214 25 H -0.196 1.196 26 H -0.226 1.226 27 C -0.031 4.031 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.209 0.791 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.231 6.576 16.742 18.125 hybrid contribution 0.665 -0.503 -1.118 1.395 sum 2.896 6.073 15.624 17.011 Atomic orbital electron populations 1.20401 0.83761 1.04626 1.04718 1.22669 0.98345 0.87776 0.96413 1.77209 0.85481 1.21664 1.26674 1.48696 1.07214 1.02599 1.54515 1.22495 0.82790 0.94718 1.05823 1.21987 0.89892 0.84991 1.03534 1.98433 1.34606 1.65379 1.96592 1.19744 0.91412 0.94808 1.23316 1.16851 0.76441 0.84385 0.82082 1.90741 1.53985 1.68687 1.31428 1.48414 1.65164 1.13828 1.05602 1.22084 1.00653 0.81372 0.96310 1.22433 1.00564 0.96397 0.92963 0.90330 1.21614 0.95906 0.99452 1.01559 1.21512 0.95752 0.93176 0.83283 0.91196 1.42378 1.49258 1.38390 1.05615 1.19584 1.17656 1.08609 0.91189 0.90444 1.25441 1.00199 1.01219 0.99095 1.69802 1.34933 1.39837 1.16999 0.85278 0.76999 0.79327 0.78994 1.21424 1.19565 1.22592 1.23074 1.00583 0.98551 0.80923 0.88303 0.88536 0.90368 0.88488 0.86488 0.87280 0.90094 0.91039 0.93385 0.90800 0.91801 0.79063 0.94064 0.92889 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.28 71.23 0.73 -0.96 16 2 C 0.11 3.23 7.26 43.53 0.32 3.55 16 3 N -0.29 -7.96 12.49 -46.67 -0.58 -8.54 16 4 N -0.35 -8.59 3.98 -357.42 -1.42 -10.01 16 5 C 0.08 1.14 11.28 127.77 1.44 2.58 16 6 C 0.15 4.31 7.54 84.32 0.64 4.95 16 7 Cl 0.02 0.53 28.56 -2.72 -0.08 0.46 16 8 C -0.28 -8.61 4.78 -20.12 -0.10 -8.71 16 9 C 0.61 20.69 7.23 86.63 0.63 21.32 16 10 O -0.57 -21.88 17.43 -4.10 -0.07 -21.96 16 11 N -0.60 -19.00 3.33 -815.78 -2.71 -21.71 16 12 C 0.12 3.32 6.46 86.73 0.56 3.88 16 13 C -0.10 -3.07 3.20 -9.60 -0.03 -3.10 16 14 H 0.08 2.44 8.00 -2.39 -0.02 2.43 16 15 C -0.13 -3.32 9.16 71.98 0.66 -2.66 16 16 C 0.17 6.27 3.16 46.40 0.15 6.42 16 17 H 0.07 2.54 8.00 -2.39 -0.02 2.52 16 18 N -0.72 -33.18 5.24 -316.33 -1.66 -34.84 16 19 C -0.24 -12.33 9.96 84.03 0.84 -11.49 16 20 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 22 N -0.97 -56.40 13.06 21.65 0.28 -56.12 16 23 Si 0.96 44.26 29.55 68.60 2.03 46.29 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 C 0.09 3.27 6.37 86.86 0.55 3.83 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 1.78 8.01 -2.38 -0.02 1.76 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.14 7.77 -2.39 -0.02 1.12 16 34 H 0.08 2.11 7.76 -2.39 -0.02 2.09 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.52 8.06 -2.38 -0.02 1.50 16 39 H 0.38 18.88 7.76 -92.71 -0.72 18.16 16 40 H 0.25 14.33 8.31 -92.70 -0.77 13.55 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 2.21 7.69 -2.39 -0.02 2.19 16 Total: -1.00 -67.54 371.48 2.95 -64.59 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.32 Total: 25.42 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 6.85 Total: 16.42 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -6.10 Total: -131.22 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.07 Total: -21.96 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -0.08 Total: 0.46 kcal Total: -67.54 2.95 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054946330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.963 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds