Wall clock time and date at job start Sat Apr 11 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30413 * 125.97473 * 2 1 4 4 N 1.39930 * 108.96153 * 180.26273 * 3 2 1 5 5 C 1.46496 * 125.74970 * 179.73855 * 4 3 2 6 6 C 1.34347 * 108.49806 * 359.73574 * 4 3 2 7 7 Cl 1.73594 * 126.31926 * 179.97438 * 6 4 3 8 8 C 1.38284 * 107.36288 * 0.02562 * 6 4 3 9 9 C 1.47298 * 126.43483 * 179.97438 * 8 6 4 10 10 O 1.21618 * 119.99547 * 90.02545 * 9 8 6 11 11 N 1.34778 * 120.00310 * 270.02502 * 9 8 6 12 12 C 1.47015 * 125.64845 * 179.97438 * 11 9 8 13 13 C 1.54325 * 107.27065 * 178.98781 * 12 11 9 14 14 H 1.08993 * 110.72326 * 96.17079 * 13 12 11 15 15 C 1.52999 * 110.72134 * 219.44639 * 13 12 11 16 16 C 1.55157 * 102.94374 * 337.80787 * 13 12 11 17 17 H 1.09001 * 111.00846 * 153.57645 * 16 13 12 18 18 N 1.46502 * 111.00342 * 277.43173 * 16 13 12 19 19 C 1.36939 * 119.99864 * 204.99715 * 18 16 13 20 20 H 1.08003 * 119.99867 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00290 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99619 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00441 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46769 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47066 * 119.99584 * 23 21 19 26 26 H 1.48492 * 109.47467 * 240.00126 * 23 21 19 27 27 C 1.47425 * 125.64271 * 0.05484 * 11 9 8 28 28 H 1.08999 * 109.47034 * 270.17019 * 1 2 3 29 29 H 1.09005 * 109.47562 * 30.17050 * 1 2 3 30 30 H 1.09001 * 109.47188 * 150.17245 * 1 2 3 31 31 H 1.08998 * 109.46859 * 269.99559 * 5 4 3 32 32 H 1.08993 * 109.47534 * 29.99663 * 5 4 3 33 33 H 1.09004 * 109.46843 * 149.99997 * 5 4 3 34 34 H 1.09000 * 109.88350 * 59.56990 * 12 11 9 35 35 H 1.08998 * 109.88602 * 298.40656 * 12 11 9 36 36 H 1.09001 * 109.47064 * 173.51920 * 15 13 12 37 37 H 1.09002 * 109.47158 * 293.52382 * 15 13 12 38 38 H 1.09003 * 109.47236 * 53.51711 * 15 13 12 39 39 H 0.96994 * 120.00503 * 24.99476 * 18 16 13 40 40 H 0.97002 * 119.99623 * 179.97438 * 22 21 19 41 41 H 1.08999 * 110.36633 * 85.25141 * 27 11 9 42 42 H 1.08996 * 110.37033 * 322.91522 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0554 0.0000 4 7 3.6111 0.6460 -0.0061 5 6 4.7774 1.5325 -0.0134 6 6 3.6459 -0.6970 -0.0039 7 17 5.0708 -1.6886 -0.0101 8 6 2.3373 -1.1438 0.0029 9 6 1.8922 -2.5479 0.0068 10 8 1.7131 -3.1260 1.0617 11 7 1.6835 -3.1920 -1.1586 12 6 1.2414 -4.5870 -1.2993 13 6 1.1158 -4.8777 -2.8097 14 1 2.0192 -5.3570 -3.1867 15 6 -0.1154 -5.7402 -3.0945 16 6 0.9484 -3.4625 -3.4233 17 1 1.3022 -3.4391 -4.4540 18 7 -0.4438 -3.0144 -3.3378 19 6 -0.9200 -2.0861 -4.2248 20 1 -0.2691 -1.6841 -4.9871 21 6 -2.2392 -1.6619 -4.1442 22 7 -3.0326 -2.1524 -3.2155 23 14 -2.8886 -0.3952 -5.3538 24 1 -1.8053 -0.0058 -6.2920 25 1 -4.0206 -0.9765 -6.1193 26 1 -3.3563 0.8033 -4.6121 27 6 1.8625 -2.6147 -2.5033 28 1 -0.3633 0.0031 1.0277 29 1 -0.3634 0.8885 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 5.0615 1.7505 -1.0429 32 1 4.5308 2.4617 0.5000 33 1 5.6078 1.0446 0.4971 34 1 0.2742 -4.7201 -0.8146 35 1 1.9771 -5.2560 -0.8530 36 1 -0.2498 -5.8371 -4.1719 37 1 0.0235 -6.7281 -2.6553 38 1 -0.9971 -5.2699 -2.6592 39 1 -1.0283 -3.3752 -2.6530 40 1 -3.9544 -1.8556 -3.1590 41 1 2.9025 -2.7012 -2.8179 42 1 1.5476 -1.5713 -2.5132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054946331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:40 Heat of formation + Delta-G solvation = 34.521134 kcal Electronic energy + Delta-G solvation = -26655.558761 eV Core-core repulsion = 22890.966796 eV Total energy + Delta-G solvation = -3764.591964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63399 -40.83548 -38.85132 -38.17988 -35.60888 -35.21268 -33.83877 -32.24422 -31.56268 -30.53523 -29.32161 -27.83587 -26.52885 -25.72780 -23.95489 -22.74264 -21.58630 -20.62352 -20.34224 -19.35280 -18.48536 -17.69133 -17.27389 -16.85818 -16.65490 -16.27839 -15.91912 -15.48492 -15.23722 -14.66266 -14.54633 -14.41543 -14.31622 -13.97394 -13.74252 -13.64676 -13.51780 -13.36896 -13.32173 -12.96407 -12.88537 -12.86262 -12.81138 -12.78644 -12.23457 -12.06318 -11.96204 -11.91452 -11.45321 -11.34159 -11.10558 -10.93224 -10.38494 -9.80041 -9.65635 -8.89441 -7.86260 -5.13259 0.09493 0.25940 1.11939 1.42251 1.46654 1.50225 1.52129 1.59882 2.15272 2.60932 3.15854 3.44736 3.55861 3.68705 3.92735 3.97823 3.99524 4.14933 4.17216 4.19552 4.30318 4.46457 4.56476 4.59172 4.68609 4.70511 4.71158 4.77733 4.82026 4.92552 5.00380 5.04890 5.21159 5.26303 5.30237 5.44255 5.49416 5.59537 5.65759 6.25999 6.34658 6.51690 7.10042 7.42831 8.17262 8.40526 9.36810 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.004966 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.513251 B = 5636.784755 C = 6926.128865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.115 3.885 3 N -0.286 5.286 4 N -0.346 5.346 5 C 0.080 3.920 6 C 0.160 3.840 7 Cl 0.032 6.968 8 C -0.271 4.271 9 C 0.611 3.389 10 O -0.580 6.580 11 N -0.591 5.591 12 C 0.114 3.886 13 C -0.098 4.098 14 H 0.118 0.882 15 C -0.124 4.124 16 C 0.162 3.838 17 H 0.087 0.913 18 N -0.716 5.716 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.066 4.066 22 N -0.964 5.964 23 Si 0.958 3.042 24 H -0.266 1.266 25 H -0.299 1.299 26 H -0.300 1.300 27 C 0.085 3.915 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.375 0.625 40 H 0.247 0.753 41 H 0.085 0.915 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.089 1.686 3.497 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 N -0.110 5.110 4 N -0.127 5.127 5 C -0.058 4.058 6 C 0.002 3.998 7 Cl 0.060 6.940 8 C -0.288 4.288 9 C 0.398 3.602 10 O -0.461 6.461 11 N -0.321 5.321 12 C -0.008 4.008 13 C -0.118 4.118 14 H 0.136 0.864 15 C -0.182 4.182 16 C 0.051 3.949 17 H 0.105 0.895 18 N -0.355 5.355 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.259 4.259 22 N -0.615 5.615 23 Si 0.789 3.211 24 H -0.191 1.191 25 H -0.226 1.226 26 H -0.228 1.228 27 C -0.041 4.041 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.208 0.792 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 19.307 2.833 3.934 19.906 hybrid contribution -0.962 -0.177 -0.152 0.990 sum 18.344 2.657 3.782 18.918 Atomic orbital electron populations 1.20200 0.85297 1.03806 1.03674 1.22360 0.97431 0.88547 0.96650 1.77225 0.85775 1.21210 1.26816 1.48725 1.06959 1.02703 1.54354 1.22531 0.82577 0.94586 1.06098 1.21846 0.89627 0.84861 1.03510 1.98419 1.33824 1.65198 1.96595 1.19678 0.91558 0.94432 1.23089 1.16910 0.76588 0.84429 0.82269 1.90723 1.54619 1.68814 1.31912 1.48329 1.64407 1.13523 1.05883 1.22084 0.99221 0.81760 0.97783 1.22524 1.00709 0.96091 0.92472 0.86381 1.21504 0.96223 0.98725 1.01704 1.21650 0.84571 0.91548 0.97146 0.89529 1.42469 1.07366 1.48687 1.36975 1.19595 0.94122 1.14440 1.07894 0.90388 1.25334 0.97221 1.02654 1.00644 1.69814 1.06168 1.48312 1.37213 0.85298 0.78121 0.78885 0.78814 1.19076 1.22640 1.22802 1.23237 1.00354 0.98683 0.81820 0.88964 0.89592 0.91970 0.87905 0.86909 0.86976 0.93605 0.90318 0.92421 0.91137 0.94780 0.79220 0.94365 0.89747 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.51 10.28 71.23 0.73 -1.78 16 2 C 0.12 4.05 7.26 43.53 0.32 4.36 16 3 N -0.29 -9.04 12.49 -46.67 -0.58 -9.63 16 4 N -0.35 -8.73 3.98 -357.42 -1.42 -10.15 16 5 C 0.08 1.07 11.28 127.77 1.44 2.51 16 6 C 0.16 4.50 7.54 84.32 0.64 5.13 16 7 Cl 0.03 0.69 28.56 -2.72 -0.08 0.61 16 8 C -0.27 -9.45 4.78 -20.12 -0.10 -9.54 16 9 C 0.61 23.45 7.23 86.63 0.63 24.08 16 10 O -0.58 -25.75 17.43 -4.09 -0.07 -25.82 16 11 N -0.59 -20.63 3.33 -815.77 -2.71 -23.35 16 12 C 0.11 3.63 6.46 86.73 0.56 4.19 16 13 C -0.10 -2.76 3.42 -9.61 -0.03 -2.80 16 14 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 15 C -0.12 -3.69 8.71 71.98 0.63 -3.06 16 16 C 0.16 5.56 3.47 46.39 0.16 5.72 16 17 H 0.09 2.79 8.09 -2.39 -0.02 2.77 16 18 N -0.72 -32.63 4.59 -316.32 -1.45 -34.08 16 19 C -0.23 -11.66 9.96 84.03 0.84 -10.82 16 20 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 22 N -0.96 -56.83 13.06 21.65 0.28 -56.55 16 23 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 27 C 0.08 2.77 6.38 86.87 0.55 3.33 16 28 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 30 H 0.06 2.58 8.01 -2.39 -0.02 2.56 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.00 7.77 -2.38 -0.02 0.98 16 34 H 0.05 1.68 7.76 -2.39 -0.02 1.66 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.03 1.26 6.48 -2.39 -0.02 1.24 16 39 H 0.37 19.07 6.38 -92.71 -0.59 18.48 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 2.04 7.69 -2.39 -0.02 2.02 16 Total: -1.00 -69.88 368.18 3.27 -66.61 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.45 Total: 27.45 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.83 Total: 18.19 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -5.89 Total: -133.76 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.82 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: 0.69 SS G_CDS: -0.08 Total: 0.61 kcal Total: -69.88 3.27 -66.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054946331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.128 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds