Wall clock time and date at job start Sat Apr 11 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34230 * 126.28098 * 2 1 4 4 H 0.97004 * 125.74250 * 0.06128 * 3 2 1 5 5 N 1.39937 * 108.52129 * 180.29923 * 3 2 1 6 6 C 1.30523 * 108.89547 * 359.73056 * 5 3 2 7 7 Cl 1.73602 * 126.00677 * 179.97438 * 6 5 3 8 8 C 1.38075 * 126.28078 * 179.84871 * 2 1 3 9 9 C 1.47381 * 126.41981 * 359.96346 * 8 2 1 10 10 O 1.21605 * 120.00174 * 269.71269 * 9 8 2 11 11 N 1.34773 * 120.00033 * 89.71752 * 9 8 2 12 12 C 1.46501 * 120.00278 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.52344 * 325.08277 * 12 11 9 14 14 C 1.53043 * 109.50041 * 204.99878 * 12 11 9 15 15 C 1.53035 * 109.53772 * 301.41552 * 14 12 11 16 16 C 1.53193 * 109.31188 * 298.63401 * 15 14 12 17 17 H 1.08997 * 109.58414 * 294.84429 * 16 15 14 18 18 C 1.53001 * 109.58435 * 174.56922 * 16 15 14 19 19 N 1.46916 * 108.77480 * 54.63743 * 16 15 14 20 20 C 1.36944 * 120.63218 * 126.37080 * 19 16 15 21 21 H 1.08000 * 119.99633 * 329.82332 * 20 19 16 22 22 C 1.38810 * 120.00181 * 149.81538 * 20 19 16 23 23 N 1.31620 * 119.99942 * 345.03663 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 165.03260 * 22 20 19 25 25 H 1.48502 * 109.47291 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46879 * 120.00159 * 24 22 20 27 27 H 1.48499 * 109.47336 * 240.00094 * 24 22 20 28 28 C 1.46926 * 118.74068 * 306.38647 * 19 16 15 29 29 H 1.08994 * 109.47299 * 270.15071 * 1 2 3 30 30 H 1.08998 * 109.46984 * 30.15408 * 1 2 3 31 31 H 1.09007 * 109.47233 * 150.14987 * 1 2 3 32 32 H 0.97000 * 120.00244 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.45720 * 181.39205 * 14 12 11 34 34 H 1.09002 * 109.45848 * 61.43682 * 14 12 11 35 35 H 1.09000 * 109.49883 * 178.68016 * 15 14 12 36 36 H 1.09002 * 109.50059 * 58.58896 * 15 14 12 37 37 H 1.08999 * 109.47596 * 60.28088 * 18 16 15 38 38 H 1.09002 * 109.47015 * 180.28575 * 18 16 15 39 39 H 1.09001 * 109.47159 * 300.27921 * 18 16 15 40 40 H 0.97005 * 119.99905 * 180.02562 * 23 22 20 41 41 H 1.09001 * 109.58881 * 293.82679 * 28 19 16 42 42 H 1.09007 * 109.70484 * 173.46845 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0008 5 7 3.6339 0.6552 -0.0069 6 6 3.6598 -0.6497 -0.0053 7 17 5.0841 -1.6423 -0.0126 8 6 2.3240 -1.1131 0.0029 9 6 1.8858 -2.5202 0.0074 10 8 1.7105 -3.0991 1.0624 11 7 1.6793 -3.1654 -1.1577 12 6 1.2442 -4.5643 -1.1533 13 1 1.7021 -5.0856 -0.3126 14 6 1.6675 -5.2351 -2.4621 15 6 1.0516 -4.4840 -3.6447 16 6 -0.4758 -4.5437 -3.5428 17 1 -0.8093 -5.5755 -3.6538 18 6 -1.0974 -3.6826 -4.6441 19 7 -0.8821 -4.0335 -2.2263 20 6 -1.8034 -3.0257 -2.1226 21 1 -1.8829 -2.2843 -2.9039 22 6 -2.6352 -2.9571 -1.0134 23 7 -2.7536 -3.9962 -0.2143 24 14 -3.5862 -1.3899 -0.6547 25 1 -3.2816 -0.3765 -1.6966 26 1 -5.0422 -1.6823 -0.6599 27 1 -3.1915 -0.8651 0.6772 28 6 -0.2810 -4.6250 -1.0231 29 1 -0.3633 0.0027 1.0276 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3634 -0.8914 -0.5115 32 1 1.8187 -2.7036 -1.9992 33 1 1.3219 -6.2688 -2.4687 34 1 2.7542 -5.2152 -2.5455 35 1 1.3724 -4.9481 -4.5774 36 1 1.3772 -3.4439 -3.6246 37 1 -0.7884 -4.0604 -5.6188 38 1 -2.1839 -3.7224 -4.5667 39 1 -0.7627 -2.6514 -4.5315 40 1 -3.3351 -3.9484 0.5606 41 1 -0.5987 -5.6634 -0.9286 42 1 -0.5951 -4.0651 -0.1422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071557279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:51 Heat of formation + Delta-G solvation = 27.780365 kcal Electronic energy + Delta-G solvation = -27295.377898 eV Core-core repulsion = 23530.493632 eV Total energy + Delta-G solvation = -3764.884266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63216 -40.67897 -38.94547 -37.95557 -35.67517 -34.43575 -33.76765 -32.85051 -31.73597 -31.46787 -28.61007 -27.75176 -26.64694 -24.15352 -23.70766 -23.07569 -22.02508 -21.05171 -20.29710 -19.05331 -18.15721 -17.58546 -17.11443 -16.67719 -16.37549 -16.21932 -15.78466 -15.51180 -15.44332 -14.92224 -14.73708 -14.48088 -14.16150 -14.09187 -13.97340 -13.62579 -13.33760 -13.03894 -12.94059 -12.80350 -12.75974 -12.56416 -12.46813 -12.35185 -12.04442 -11.95885 -11.91114 -11.51591 -11.17122 -11.00631 -10.93364 -10.56758 -10.44894 -9.90408 -9.87679 -8.47127 -7.72265 -5.18435 0.32777 0.41154 1.00786 1.45939 1.50039 1.59183 1.64859 1.80589 2.51907 2.58794 3.43589 3.47444 3.70988 3.74508 3.94390 4.06244 4.12093 4.17374 4.25579 4.49517 4.55909 4.66698 4.70762 4.73310 4.81880 4.88102 5.02769 5.06077 5.10812 5.15823 5.17581 5.32306 5.38849 5.61847 5.68026 5.76432 5.81784 5.83314 5.93515 6.22096 6.53848 6.72592 7.27829 7.40049 8.01340 8.54863 9.33717 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.005991 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.371538 B = 4672.636714 C = 5970.672751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.166 3.834 3 N -0.426 5.426 4 H 0.466 0.534 5 N -0.285 5.285 6 C 0.152 3.848 7 Cl 0.023 6.977 8 C -0.293 4.293 9 C 0.598 3.402 10 O -0.583 6.583 11 N -0.677 5.677 12 C 0.127 3.873 13 H 0.064 0.936 14 C -0.111 4.111 15 C -0.119 4.119 16 C 0.154 3.846 17 H 0.011 0.989 18 C -0.127 4.127 19 N -0.592 5.592 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.050 4.050 23 N -0.938 5.938 24 Si 0.935 3.065 25 H -0.249 1.249 26 H -0.309 1.309 27 H -0.287 1.287 28 C 0.175 3.825 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.405 0.595 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.241 0.759 41 H -0.005 1.005 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 8.171 -6.272 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.032 3.968 3 N -0.138 5.138 4 H 0.316 0.684 5 N -0.111 5.111 6 C -0.040 4.040 7 Cl 0.051 6.949 8 C -0.309 4.309 9 C 0.383 3.617 10 O -0.463 6.463 11 N -0.326 5.326 12 C 0.020 3.980 13 H 0.082 0.918 14 C -0.149 4.149 15 C -0.158 4.158 16 C 0.049 3.951 17 H 0.029 0.971 18 C -0.184 4.184 19 N -0.316 5.316 20 C -0.362 4.362 21 H 0.094 0.906 22 C -0.245 4.245 23 N -0.585 5.585 24 Si 0.764 3.236 25 H -0.172 1.172 26 H -0.237 1.237 27 H -0.214 1.214 28 C 0.048 3.952 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.242 0.758 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.013 0.987 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.328 8.702 -5.459 16.047 hybrid contribution -1.477 0.086 0.579 1.589 sum 10.851 8.788 -4.880 14.792 Atomic orbital electron populations 1.20780 0.84948 1.06213 1.04761 1.21453 0.95032 0.85798 0.94468 1.45786 1.01883 1.09160 1.56972 0.68383 1.77033 0.97736 1.10090 1.26244 1.22549 0.88524 0.90780 1.02142 1.98398 1.34823 1.64925 1.96767 1.19812 0.91922 0.94304 1.24835 1.17298 0.75962 0.84775 0.83715 1.90745 1.53804 1.68838 1.32902 1.45713 1.66102 1.13011 1.07807 1.21546 0.96240 0.81335 0.98847 0.91773 1.21658 1.00941 0.99436 0.92840 1.21945 0.95490 1.00328 0.97992 1.20737 0.93517 0.94991 0.85868 0.97093 1.21705 0.99892 0.99679 0.97148 1.44222 1.46312 1.40981 1.00056 1.19404 1.09335 1.02291 1.05131 0.90558 1.25725 0.99085 0.99019 1.00634 1.70179 1.41304 1.29773 1.17259 0.85697 0.77711 0.81699 0.78486 1.17226 1.23718 1.21371 1.20811 0.88773 0.94718 0.90926 0.89282 0.86559 0.90228 0.75813 0.90884 0.89971 0.89514 0.91982 0.91003 0.94569 0.92838 0.94981 0.98725 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 10.25 71.24 0.73 -2.21 16 2 C 0.17 4.54 7.29 42.15 0.31 4.85 16 3 N -0.43 -9.18 7.28 -46.79 -0.34 -9.52 16 4 H 0.47 5.91 8.96 -213.42 -1.91 3.99 16 5 N -0.29 -7.63 12.64 -48.95 -0.62 -8.25 16 6 C 0.15 4.54 7.89 85.66 0.68 5.21 16 7 Cl 0.02 0.62 29.19 -2.72 -0.08 0.54 16 8 C -0.29 -9.62 5.88 -20.13 -0.12 -9.74 16 9 C 0.60 23.22 7.14 86.65 0.62 23.84 16 10 O -0.58 -27.86 16.77 -4.05 -0.07 -27.92 16 11 N -0.68 -23.71 4.91 -445.47 -2.19 -25.90 16 12 C 0.13 4.72 2.81 45.07 0.13 4.85 16 13 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 14 C -0.11 -3.17 5.59 30.62 0.17 -3.00 16 15 C -0.12 -3.25 5.20 30.67 0.16 -3.09 16 16 C 0.15 5.55 3.49 44.98 0.16 5.71 16 17 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 18 C -0.13 -4.05 7.96 71.98 0.57 -3.48 16 19 N -0.59 -26.59 2.90 -675.23 -1.96 -28.55 16 20 C -0.23 -11.30 8.57 84.03 0.72 -10.58 16 21 H 0.08 3.55 6.25 -2.91 -0.02 3.54 16 22 C -0.05 -2.63 4.95 84.86 0.42 -2.21 16 23 N -0.94 -55.06 11.22 21.65 0.24 -54.81 16 24 Si 0.93 41.49 29.41 68.60 2.02 43.51 16 25 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 26 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 27 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 28 C 0.17 8.28 4.88 86.36 0.42 8.70 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.12 2.19 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.80 7.79 -2.38 -0.02 2.78 16 32 H 0.41 12.52 6.76 -92.71 -0.63 11.90 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.31 7.66 -2.39 -0.02 1.29 16 39 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 40 H 0.24 14.09 8.31 -92.70 -0.77 13.32 16 41 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.05 2.90 6.16 -2.38 -0.01 2.89 16 Total: -1.00 -69.41 355.98 0.50 -68.91 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -1.47 Total: 23.13 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 4.96 Total: 18.86 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -4.86 Total: -127.03 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.07 Total: -27.92 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.02 Total: 43.51 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.08 Total: 0.54 kcal Total: -69.41 0.50 -68.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071557279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.692 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds