Wall clock time and date at job start Sat Apr 11 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34229 * 126.28268 * 2 1 4 4 H 0.97003 * 125.74152 * 359.97438 * 3 2 1 5 5 N 1.39933 * 108.52325 * 180.30206 * 3 2 1 6 6 C 1.30530 * 108.89335 * 359.73278 * 5 3 2 7 7 Cl 1.73595 * 126.00316 * 179.97438 * 6 5 3 8 8 C 1.38073 * 126.27945 * 179.85087 * 2 1 3 9 9 C 1.47382 * 126.42067 * 359.96785 * 8 2 1 10 10 O 1.21605 * 119.99540 * 269.71018 * 9 8 2 11 11 N 1.34769 * 120.00291 * 89.71168 * 9 8 2 12 12 C 1.46500 * 119.99931 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.52540 * 35.07633 * 12 11 9 14 14 C 1.53045 * 109.49979 * 155.16521 * 12 11 9 15 15 C 1.53034 * 109.53817 * 181.31796 * 14 12 11 16 16 C 1.53190 * 109.31105 * 298.62962 * 15 14 12 17 17 H 1.09007 * 109.70476 * 294.77843 * 16 15 14 18 18 C 1.53002 * 109.58753 * 174.42545 * 16 15 14 19 19 N 1.46920 * 108.77737 * 54.63787 * 16 15 14 20 20 C 1.36936 * 120.63115 * 126.40958 * 19 16 15 21 21 H 1.08004 * 120.00194 * 330.16138 * 20 19 16 22 22 C 1.38822 * 119.99855 * 150.15781 * 20 19 16 23 23 N 1.31620 * 119.99894 * 344.49212 * 22 20 19 24 24 Si 1.86801 * 119.99668 * 164.49152 * 22 20 19 25 25 H 1.48506 * 109.46773 * 90.00394 * 24 22 20 26 26 H 1.48501 * 109.46790 * 210.00013 * 24 22 20 27 27 H 1.48498 * 109.47308 * 330.00413 * 24 22 20 28 28 C 1.46925 * 118.74051 * 306.39056 * 19 16 15 29 29 H 1.09008 * 109.46749 * 270.15000 * 1 2 3 30 30 H 1.09002 * 109.46890 * 30.14756 * 1 2 3 31 31 H 1.08995 * 109.47404 * 150.14750 * 1 2 3 32 32 H 0.97002 * 120.00365 * 0.02562 * 11 9 8 33 33 H 1.09006 * 109.45536 * 301.33360 * 14 12 11 34 34 H 1.08998 * 109.45934 * 61.28784 * 14 12 11 35 35 H 1.09004 * 109.49845 * 178.68155 * 15 14 12 36 36 H 1.09000 * 109.50226 * 58.58361 * 15 14 12 37 37 H 1.09000 * 109.47123 * 300.71303 * 18 16 15 38 38 H 1.09007 * 109.47196 * 60.71051 * 18 16 15 39 39 H 1.08998 * 109.47588 * 180.70933 * 18 16 15 40 40 H 0.96997 * 119.99522 * 179.97438 * 23 22 20 41 41 H 1.09003 * 109.58752 * 173.39286 * 28 19 16 42 42 H 1.08993 * 109.58659 * 293.82223 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0820 0.0000 4 1 2.0020 2.0047 -0.0004 5 7 3.6340 0.6552 -0.0070 6 6 3.6598 -0.6498 -0.0054 7 17 5.0841 -1.6423 -0.0128 8 6 2.3240 -1.1131 0.0029 9 6 1.8858 -2.5202 0.0072 10 8 1.7105 -3.0991 1.0622 11 7 1.6792 -3.1653 -1.1579 12 6 1.2441 -4.5642 -1.1535 13 1 0.5769 -4.7355 -0.3089 14 6 0.5066 -4.8739 -2.4583 15 6 0.0231 -6.3257 -2.4407 16 6 1.2317 -7.2610 -2.3348 17 1 1.8424 -7.1756 -3.2337 18 6 0.7508 -8.7048 -2.1769 19 7 2.0266 -6.8755 -1.1609 20 6 2.3515 -7.7998 -0.2042 21 1 1.6926 -8.6341 -0.0134 22 6 3.5278 -7.6645 0.5205 23 7 4.4698 -6.8473 0.0996 24 14 3.7736 -8.6424 2.0931 25 1 4.4132 -9.9436 1.7719 26 1 4.6457 -7.8775 3.0203 27 1 2.4574 -8.8834 2.7370 28 6 2.4667 -5.4796 -1.0331 29 1 -0.3633 0.0027 1.0278 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3634 -0.8912 -0.5115 32 1 1.8194 -2.7036 -1.9994 33 1 -0.3499 -4.2071 -2.5583 34 1 1.1820 -4.7261 -3.3010 35 1 -0.5223 -6.5388 -3.3601 36 1 -0.6328 -6.4805 -1.5839 37 1 0.1362 -8.7871 -1.2804 38 1 0.1613 -8.9889 -3.0488 39 1 1.6119 -9.3672 -2.0891 40 1 5.2915 -6.7525 0.6062 41 1 2.9388 -5.3327 -0.0616 42 1 3.1772 -5.2464 -1.8260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071557281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:53 Heat of formation + Delta-G solvation = 22.106525 kcal Electronic energy + Delta-G solvation = -26333.344754 eV Core-core repulsion = 22568.214452 eV Total energy + Delta-G solvation = -3765.130302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64305 -40.61118 -39.06307 -37.95051 -35.92303 -34.60456 -33.75660 -32.86268 -31.82086 -31.48795 -28.60442 -27.62949 -26.66489 -24.19688 -23.60451 -23.06804 -21.97352 -21.19702 -20.57558 -18.97746 -18.29019 -17.59361 -17.36849 -16.71421 -16.36880 -16.24245 -15.83986 -15.65035 -15.34036 -15.00743 -14.84191 -14.50244 -14.17577 -14.06568 -14.03679 -13.46112 -13.31054 -13.03710 -13.01506 -12.81643 -12.73721 -12.66643 -12.51178 -12.25429 -12.10730 -11.98562 -11.86351 -11.62720 -11.40262 -11.09084 -10.93212 -10.56843 -10.49484 -10.03811 -9.90905 -8.56923 -7.81163 -5.27294 0.37216 0.42940 0.97206 1.41341 1.46296 1.53286 1.54342 1.86851 2.36710 2.54191 3.35328 3.48526 3.68365 3.77778 3.92894 4.02339 4.14161 4.16659 4.32017 4.44565 4.62799 4.64082 4.69276 4.76018 4.78522 4.86759 4.94520 5.04785 5.07868 5.12490 5.23899 5.36129 5.39710 5.52376 5.59213 5.66548 5.74687 5.86645 5.96221 6.24033 6.45230 6.64434 7.19965 7.33303 7.94962 8.44195 9.23454 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.004497 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.678466 B = 6225.181430 C = 7507.635807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.171 3.829 3 N -0.424 5.424 4 H 0.468 0.532 5 N -0.293 5.293 6 C 0.143 3.857 7 Cl 0.008 6.992 8 C -0.301 4.301 9 C 0.597 3.403 10 O -0.576 6.576 11 N -0.695 5.695 12 C 0.132 3.868 13 H 0.057 0.943 14 C -0.107 4.107 15 C -0.117 4.117 16 C 0.152 3.848 17 H 0.019 0.981 18 C -0.129 4.129 19 N -0.603 5.603 20 C -0.250 4.250 21 H 0.074 0.926 22 C -0.052 4.052 23 N -0.930 5.930 24 Si 0.952 3.048 25 H -0.279 1.279 26 H -0.302 1.302 27 H -0.270 1.270 28 C 0.181 3.819 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.410 0.590 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.243 0.757 41 H 0.040 0.960 42 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 17.389 -7.291 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.037 3.963 3 N -0.136 5.136 4 H 0.319 0.681 5 N -0.119 5.119 6 C -0.048 4.048 7 Cl 0.035 6.965 8 C -0.316 4.316 9 C 0.382 3.618 10 O -0.455 6.455 11 N -0.346 5.346 12 C 0.026 3.974 13 H 0.076 0.924 14 C -0.144 4.144 15 C -0.156 4.156 16 C 0.047 3.953 17 H 0.037 0.963 18 C -0.187 4.187 19 N -0.327 5.327 20 C -0.380 4.380 21 H 0.092 0.908 22 C -0.247 4.247 23 N -0.577 5.577 24 Si 0.781 3.219 25 H -0.206 1.206 26 H -0.229 1.229 27 H -0.195 1.195 28 C 0.053 3.947 29 H 0.119 0.881 30 H 0.142 0.858 31 H 0.108 0.892 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -11.268 17.925 -6.495 22.147 hybrid contribution 0.989 -0.838 0.885 1.569 sum -10.279 17.088 -5.611 20.715 Atomic orbital electron populations 1.20848 0.82447 1.06680 1.05708 1.21833 0.96213 0.84620 0.93669 1.45809 1.01703 1.09517 1.56571 0.68114 1.77082 0.98546 1.09781 1.26527 1.22694 0.88929 0.90962 1.02255 1.98459 1.36202 1.65061 1.96745 1.19810 0.91758 0.94285 1.25783 1.17419 0.75844 0.84913 0.83600 1.90808 1.52568 1.69100 1.33038 1.45882 1.67852 1.12591 1.08245 1.21566 0.96861 0.79636 0.99368 0.92436 1.21650 1.00130 0.97756 0.94912 1.21940 0.97401 0.93846 1.02435 1.20817 0.91536 0.94468 0.88464 0.96343 1.21733 1.00114 0.95531 1.01285 1.44317 1.61883 1.04504 1.21992 1.19440 1.00619 1.06068 1.11899 0.90807 1.25777 0.95362 1.00674 1.02875 1.70166 1.06330 1.41985 1.39188 0.85501 0.77605 0.78170 0.80646 1.20565 1.22922 1.19536 1.20742 0.92127 0.83134 0.98648 0.88097 0.85755 0.89168 0.75337 0.89016 0.91192 0.88586 0.92653 0.93458 0.90312 0.94533 0.94835 0.94096 0.98782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.25 71.24 0.73 -0.25 16 2 C 0.17 3.23 7.29 42.15 0.31 3.54 16 3 N -0.42 -6.98 7.28 -46.79 -0.34 -7.32 16 4 H 0.47 3.16 8.96 -213.42 -1.91 1.24 16 5 N -0.29 -7.70 12.64 -48.96 -0.62 -8.32 16 6 C 0.14 4.51 7.89 85.66 0.68 5.19 16 7 Cl 0.01 0.27 29.19 -2.72 -0.08 0.19 16 8 C -0.30 -8.93 5.88 -20.13 -0.12 -9.05 16 9 C 0.60 22.02 7.14 86.65 0.62 22.64 16 10 O -0.58 -27.62 16.77 -4.05 -0.07 -27.69 16 11 N -0.70 -22.72 5.08 -445.47 -2.26 -24.98 16 12 C 0.13 5.04 2.60 45.07 0.12 5.16 16 13 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 14 C -0.11 -3.01 5.35 30.62 0.16 -2.85 16 15 C -0.12 -3.51 5.37 30.67 0.16 -3.34 16 16 C 0.15 6.03 3.50 44.98 0.16 6.19 16 17 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 18 C -0.13 -4.63 7.95 71.98 0.57 -4.06 16 19 N -0.60 -30.70 2.99 -675.21 -2.02 -32.72 16 20 C -0.25 -14.12 8.57 84.04 0.72 -13.40 16 21 H 0.07 4.01 6.24 -2.91 -0.02 3.99 16 22 C -0.05 -3.07 4.94 84.86 0.42 -2.65 16 23 N -0.93 -58.85 11.23 21.65 0.24 -58.61 16 24 Si 0.95 48.36 29.58 68.60 2.03 50.39 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 27 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 28 C 0.18 9.14 4.86 86.37 0.42 9.56 16 29 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.09 1.06 7.96 -2.39 -0.02 1.04 16 32 H 0.41 10.47 8.59 -92.71 -0.80 9.68 16 33 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.73 7.44 -2.39 -0.02 1.71 16 38 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.04 1.46 7.63 -2.39 -0.02 1.44 16 40 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.04 2.51 6.15 -2.39 -0.01 2.49 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -83.23 359.80 0.20 -83.03 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -1.64 Total: 9.35 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 4.95 Total: 16.67 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -4.99 Total: -131.94 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.07 Total: -27.69 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.19 kcal Total: -83.23 0.20 -83.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071557281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.141 kcal (2) G-P(sol) polarization free energy of solvation -83.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds