Wall clock time and date at job start Sat Apr 11 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38067 * 126.28382 * 2 1 4 4 C 1.47390 * 126.42174 * 0.03205 * 3 2 1 5 5 O 1.21606 * 119.99782 * 269.71052 * 4 3 2 6 6 N 1.34776 * 119.99749 * 89.70684 * 4 3 2 7 7 C 1.46504 * 119.99477 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.77725 * 31.77203 * 7 6 4 9 9 C 1.54319 * 110.72167 * 268.52268 * 7 6 4 10 10 N 1.47028 * 107.27161 * 219.44495 * 9 7 6 11 11 C 1.36936 * 125.64535 * 178.99977 * 10 9 7 12 12 H 1.08004 * 119.99449 * 179.97438 * 11 10 9 13 13 C 1.38803 * 120.00076 * 359.97438 * 11 10 9 14 14 N 1.31615 * 120.00547 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99771 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47213 * 59.99886 * 15 13 11 17 17 H 1.48504 * 109.47320 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47273 * 299.99968 * 15 13 11 19 19 C 1.47471 * 108.71990 * 358.97693 * 10 9 7 20 20 C 1.54912 * 104.81180 * 24.07002 * 19 10 9 21 21 H 1.09003 * 110.99929 * 81.13097 * 20 19 10 22 22 C 1.52997 * 111.00317 * 204.94518 * 20 19 10 23 23 C 1.41386 * 107.15247 * 179.76528 * 3 2 1 24 24 Cl 1.73604 * 126.00262 * 180.24239 * 23 3 2 25 25 N 1.30530 * 107.99493 * 0.24365 * 23 3 2 26 26 N 1.34234 * 126.27678 * 180.19258 * 2 1 3 27 27 C 1.46501 * 125.73952 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47599 * 89.99024 * 1 2 3 29 29 H 1.09004 * 109.47193 * 209.99987 * 1 2 3 30 30 H 1.09001 * 109.46672 * 329.99431 * 1 2 3 31 31 H 0.96996 * 120.00534 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.88417 * 338.86731 * 9 7 6 33 33 H 1.09002 * 109.88202 * 99.87740 * 9 7 6 34 34 H 0.97001 * 120.00731 * 180.02562 * 14 13 11 35 35 H 1.08997 * 110.34769 * 265.24869 * 19 10 9 36 36 H 1.09000 * 110.40110 * 142.91615 * 19 10 9 37 37 H 1.09002 * 109.47153 * 175.41847 * 22 20 19 38 38 H 1.09001 * 109.46832 * 55.42038 * 22 20 19 39 39 H 1.09004 * 109.47261 * 295.42019 * 22 20 19 40 40 H 1.09007 * 109.46937 * 270.26926 * 27 26 2 41 41 H 1.08998 * 109.46986 * 30.27001 * 27 26 2 42 42 H 1.09003 * 109.46625 * 150.27635 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1130 0.0000 4 6 1.8859 2.5202 0.0007 5 8 1.7098 3.1026 -1.0522 6 7 1.6804 3.1614 1.1682 7 6 1.2454 4.5604 1.1688 8 1 0.6223 4.7719 0.2998 9 6 2.4609 5.5101 1.2134 10 7 2.1114 6.6248 2.1062 11 6 2.9289 7.6747 2.4296 12 1 2.5770 8.4472 3.0973 13 6 4.2096 7.7461 1.8992 14 7 4.6382 6.8050 1.0851 15 14 5.3249 9.1781 2.3410 16 1 5.5430 9.2009 3.8097 17 1 6.6298 9.0208 1.6497 18 1 4.6888 10.4507 1.9152 19 6 0.7346 6.4254 2.5956 20 6 0.4907 4.8999 2.4812 21 1 0.9244 4.3703 3.3295 22 6 -1.0022 4.5915 2.3509 23 6 3.6598 0.6496 0.0055 24 17 5.0842 1.6420 0.0138 25 7 3.6340 -0.6555 0.0033 26 7 2.3013 -1.0821 -0.0036 27 6 1.8490 -2.4756 -0.0078 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.8212 2.6970 2.0080 32 1 3.3305 4.9813 1.6036 33 1 2.6743 5.8865 0.2129 34 1 5.5334 6.8547 0.7148 35 1 0.0275 6.9706 1.9704 36 1 0.6502 6.7463 3.6338 37 1 -1.1397 3.5222 2.1907 38 1 -1.4143 5.1416 1.5049 39 1 -1.5162 4.8912 3.2642 40 1 1.7326 -2.8228 1.0189 41 1 0.8924 -2.5455 -0.5257 42 1 2.5855 -3.0951 -0.5195 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080859874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:09 Heat of formation + Delta-G solvation = 35.775730 kcal Electronic energy + Delta-G solvation = -26015.545816 eV Core-core repulsion = 22251.008255 eV Total energy + Delta-G solvation = -3764.537561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63756 -40.67403 -38.96829 -37.95306 -35.57009 -34.53152 -34.24146 -33.14415 -32.11921 -29.81289 -28.44780 -27.68609 -27.27092 -25.39841 -23.70100 -22.18795 -21.52257 -21.50612 -20.62789 -18.86046 -18.60988 -17.59641 -17.18692 -16.90321 -16.74126 -16.10207 -15.81033 -15.54827 -15.33869 -14.69322 -14.46443 -14.25828 -14.19881 -14.03697 -13.98341 -13.67202 -13.58990 -13.30210 -13.18462 -13.01139 -12.82390 -12.67315 -12.57986 -12.54301 -12.24436 -12.04682 -11.83618 -11.82569 -11.62486 -11.42740 -11.03814 -10.71176 -10.33015 -9.98260 -9.76886 -8.89178 -7.81241 -5.19287 0.32699 0.45858 1.00200 1.44224 1.48448 1.50263 1.54771 1.67246 2.31835 2.51707 3.36351 3.40640 3.57849 3.65888 3.79432 3.97188 4.06645 4.14059 4.15213 4.39977 4.42610 4.54295 4.63310 4.65630 4.70327 4.76856 4.77868 4.81157 4.92733 5.02379 5.12800 5.12977 5.25349 5.34385 5.47539 5.55563 5.65687 5.78701 5.83367 6.18550 6.19575 6.58436 7.08958 7.26559 7.79156 8.42900 9.27086 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.004016 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.386059 B = 6970.573164 C = 8505.999418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.158 3.842 3 C -0.303 4.303 4 C 0.603 3.397 5 O -0.576 6.576 6 N -0.688 5.688 7 C 0.136 3.864 8 H 0.080 0.920 9 C 0.188 3.812 10 N -0.628 5.628 11 C -0.243 4.243 12 H 0.088 0.912 13 C -0.068 4.068 14 N -0.950 5.950 15 Si 0.978 3.022 16 H -0.272 1.272 17 H -0.299 1.299 18 H -0.276 1.276 19 C 0.132 3.868 20 C -0.093 4.093 21 H 0.089 0.911 22 C -0.128 4.128 23 C 0.139 3.861 24 Cl 0.004 6.996 25 N -0.303 5.303 26 N -0.339 5.339 27 C 0.082 3.918 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.410 0.590 32 H 0.016 0.984 33 H -0.012 1.012 34 H 0.243 0.757 35 H 0.027 0.973 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 -22.077 2.188 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.025 3.975 3 C -0.319 4.319 4 C 0.389 3.611 5 O -0.455 6.455 6 N -0.338 5.338 7 C 0.030 3.970 8 H 0.098 0.902 9 C 0.062 3.938 10 N -0.354 5.354 11 C -0.372 4.372 12 H 0.106 0.894 13 C -0.261 4.261 14 N -0.599 5.599 15 Si 0.806 3.194 16 H -0.198 1.198 17 H -0.226 1.226 18 H -0.202 1.202 19 C 0.007 3.993 20 C -0.113 4.113 21 H 0.107 0.893 22 C -0.185 4.185 23 C -0.052 4.052 24 Cl 0.032 6.968 25 N -0.128 5.128 26 N -0.121 5.121 27 C -0.056 4.056 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.109 0.891 31 H 0.246 0.754 32 H 0.034 0.966 33 H 0.007 0.993 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.914 -22.721 1.414 26.173 hybrid contribution 1.533 1.777 0.065 2.347 sum -11.382 -20.944 1.479 23.883 Atomic orbital electron populations 1.20837 0.82364 1.06610 1.05675 1.21888 0.96421 0.84294 0.94884 1.19764 0.91716 0.94131 1.26271 1.17375 0.75496 0.84880 0.83394 1.90765 1.52761 1.68935 1.33030 1.45740 1.67663 1.12005 1.08388 1.22123 0.95356 0.80216 0.99294 0.90199 1.21095 0.93418 0.87479 0.91847 1.44723 1.12204 1.24644 1.53847 1.19462 0.94213 1.00272 1.23214 0.89393 1.25703 0.99258 1.01211 0.99964 1.70242 1.17656 1.35570 1.36387 0.85165 0.77548 0.78904 0.77794 1.19811 1.22593 1.20212 1.21878 0.85284 0.94336 0.97804 1.22549 0.97452 0.95821 0.95492 0.89256 1.21651 0.91864 1.02340 1.02647 1.22662 0.88811 0.90957 1.02775 1.98452 1.36458 1.65124 1.96806 1.77095 0.99088 1.09757 1.26886 1.48523 1.01490 1.08262 1.53797 1.22598 1.03003 0.73765 1.06200 0.87947 0.85977 0.89107 0.75379 0.96603 0.99328 0.94828 0.95538 0.92724 0.90799 0.92940 0.90457 0.87688 0.85281 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.70 71.24 0.69 -0.31 16 2 C 0.16 3.25 7.01 42.15 0.30 3.55 16 3 C -0.30 -9.35 5.88 -20.13 -0.12 -9.47 16 4 C 0.60 22.21 7.17 86.65 0.62 22.83 16 5 O -0.58 -26.51 16.75 -4.05 -0.07 -26.58 16 6 N -0.69 -23.24 5.10 -440.21 -2.24 -25.49 16 7 C 0.14 5.31 2.79 46.18 0.13 5.44 16 8 H 0.08 3.32 7.45 -2.39 -0.02 3.30 16 9 C 0.19 10.02 5.12 86.73 0.44 10.46 16 10 N -0.63 -33.27 3.40 -691.87 -2.35 -35.62 16 11 C -0.24 -14.01 10.28 84.03 0.86 -13.15 16 12 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 13 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 14 N -0.95 -61.01 10.31 21.65 0.22 -60.78 16 15 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 C 0.13 5.24 6.71 86.85 0.58 5.82 16 20 C -0.09 -2.91 3.27 -9.40 -0.03 -2.94 16 21 H 0.09 2.60 8.01 -2.39 -0.02 2.58 16 22 C -0.13 -2.76 9.29 71.98 0.67 -2.09 16 23 C 0.14 4.60 7.89 85.66 0.68 5.28 16 24 Cl 0.00 0.14 29.19 -2.72 -0.08 0.06 16 25 N -0.30 -8.64 12.50 -48.95 -0.61 -9.25 16 26 N -0.34 -6.49 3.98 -354.29 -1.41 -7.90 16 27 C 0.08 0.52 11.05 127.77 1.41 1.93 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.12 0.25 7.71 -2.38 -0.02 0.23 16 30 H 0.09 1.06 7.96 -2.39 -0.02 1.05 16 31 H 0.41 11.56 8.55 -92.71 -0.79 10.77 16 32 H 0.02 0.94 7.27 -2.39 -0.02 0.92 16 33 H -0.01 -0.74 7.50 -2.39 -0.02 -0.76 16 34 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.03 1.04 8.03 -2.39 -0.02 1.02 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 39 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.13 -0.05 7.63 -2.39 -0.02 -0.07 16 42 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -86.88 366.96 2.44 -84.44 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.25 Total: 7.63 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 6.70 Total: 23.73 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -6.39 Total: -139.04 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.07 Total: -26.58 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -86.88 2.44 -84.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080859874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.218 kcal (2) G-P(sol) polarization free energy of solvation -86.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds