Wall clock time and date at job start Sat Apr 11 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99594 * 2 1 4 4 H 1.48504 * 109.46815 * 274.99473 * 3 2 1 5 5 H 1.48502 * 109.47140 * 34.99742 * 3 2 1 6 6 H 1.48493 * 109.46922 * 154.99760 * 3 2 1 7 7 C 1.38807 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99736 * 189.24683 * 7 2 1 9 9 N 1.36936 * 120.00306 * 9.24218 * 7 2 1 10 10 C 1.46532 * 119.74164 * 208.72703 * 9 7 2 11 11 C 1.53149 * 108.25074 * 236.44639 * 10 9 7 12 12 C 1.53061 * 109.21266 * 301.58794 * 11 10 9 13 13 H 1.09001 * 113.84066 * 274.48092 * 12 11 10 14 14 C 1.54083 * 111.39052 * 142.39859 * 12 11 10 15 15 N 1.47284 * 87.60562 * 273.96982 * 14 12 11 16 16 C 1.34782 * 136.53877 * 151.36050 * 15 14 12 17 17 O 1.21624 * 119.99948 * 184.90537 * 16 15 14 18 18 C 1.47156 * 120.00055 * 4.91664 * 16 15 14 19 19 C 1.38414 * 126.88554 * 6.08630 * 18 16 15 20 20 C 1.39677 * 105.35682 * 180.02562 * 19 18 16 21 21 N 1.30863 * 107.86208 * 359.97438 * 20 19 18 22 22 N 1.28439 * 110.92876 * 0.02562 * 21 20 19 23 23 C 1.46504 * 125.18872 * 180.26240 * 22 21 20 24 24 F 1.39898 * 109.47183 * 115.63217 * 23 22 21 25 25 F 1.39895 * 109.47055 * 235.63339 * 23 22 21 26 26 C 1.46464 * 86.91408 * 331.62461 * 15 14 12 27 27 H 1.08994 * 111.43972 * 276.12298 * 26 15 14 28 28 C 1.45700 * 119.73672 * 28.74959 * 9 7 2 29 29 H 0.96998 * 120.00159 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.71048 * 116.75493 * 10 9 7 31 31 H 1.09002 * 109.70683 * 356.13421 * 10 9 7 32 32 H 1.09007 * 109.51402 * 181.66315 * 11 10 9 33 33 H 1.08996 * 109.51344 * 61.51152 * 11 10 9 34 34 H 1.09006 * 113.52819 * 159.28478 * 14 12 11 35 35 H 1.09002 * 113.52871 * 28.65589 * 14 12 11 36 36 H 1.07998 * 127.31980 * 0.05446 * 19 18 16 37 37 H 1.08004 * 126.06752 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.47125 * 355.62795 * 23 22 21 39 39 H 1.08999 * 108.78684 * 260.87595 * 28 9 7 40 40 H 1.09001 * 108.78949 * 19.08776 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0798 -1.2082 0.1498 9 7 1.3390 -2.3803 -0.1915 10 6 1.8576 -3.6165 0.4000 11 6 2.0601 -4.6376 -0.7234 12 6 0.7263 -4.8730 -1.4364 13 1 0.0997 -5.6275 -0.9609 14 6 0.9243 -5.0514 -2.9540 15 7 0.8630 -3.5846 -3.0720 16 6 1.3660 -2.6480 -3.9005 17 8 1.1891 -1.4682 -3.6633 18 6 2.1288 -3.0527 -5.0920 19 6 2.3155 -4.3416 -5.5607 20 6 3.1025 -4.2080 -6.7069 21 7 3.3468 -2.9341 -6.8799 22 7 2.7948 -2.2316 -5.9570 23 6 2.8635 -0.7720 -5.8519 24 9 1.5820 -0.2325 -6.0060 25 9 3.3706 -0.4182 -4.5970 26 6 0.0143 -3.6032 -1.8785 27 1 -1.0275 -3.7972 -2.1335 28 6 0.1150 -2.3948 -0.9817 29 1 -0.4850 0.8400 0.0004 30 1 1.1429 -4.0050 1.1254 31 1 2.8098 -3.4175 0.8918 32 1 2.4183 -5.5768 -0.3016 33 1 2.7912 -4.2552 -1.4355 34 1 0.0953 -5.5624 -3.4439 35 1 1.8952 -5.4693 -3.2201 36 1 1.9334 -5.2561 -5.1317 37 1 3.4475 -5.0131 -7.3387 38 1 3.5182 -0.3820 -6.6314 39 1 -0.7396 -2.3850 -0.3053 40 1 0.0834 -1.4953 -1.5966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084373826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:11 Heat of formation + Delta-G solvation = 38.221598 kcal Electronic energy + Delta-G solvation = -29858.653226 eV Core-core repulsion = 25542.425046 eV Total energy + Delta-G solvation = -4316.228180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.08039 -47.18377 -42.54898 -40.52086 -37.56586 -35.23404 -32.90001 -32.15035 -31.25584 -30.13837 -28.71912 -27.01030 -26.23955 -23.93551 -23.49371 -22.56297 -21.61599 -20.96807 -20.12697 -18.47935 -17.73654 -17.58631 -17.33358 -16.76915 -15.97600 -15.86857 -15.42749 -15.24254 -14.64159 -14.20783 -14.01530 -13.90972 -13.64134 -13.47176 -13.39683 -13.33618 -13.15710 -13.00143 -12.68131 -12.35571 -11.99973 -11.90230 -11.46339 -11.07812 -11.05700 -10.67009 -10.63375 -10.46354 -10.16488 -9.89950 -9.77618 -9.69555 -9.68350 -9.20523 -9.10010 -8.28918 -8.19766 -6.51570 -5.61784 -3.07926 1.17500 1.75269 2.43536 3.04640 3.50286 3.54835 3.56215 3.58638 3.61706 4.05869 4.40449 4.59877 4.65925 4.67403 4.77898 5.00225 5.15149 5.30823 5.40796 5.47162 5.50397 5.58376 5.62832 5.68595 5.87312 6.00789 6.12911 6.24457 6.30894 6.32312 6.39319 6.50445 6.59218 6.80302 7.01524 7.49851 7.74308 7.81367 7.97097 8.17104 8.56368 8.63499 9.40208 10.02784 10.51245 11.46295 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.006685 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.581961 B = 4187.269976 C = 5862.676480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.014 3.986 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.060 0.940 9 N -0.584 5.584 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.111 4.111 13 H 0.096 0.904 14 C 0.090 3.910 15 N -0.618 5.618 16 C 0.601 3.399 17 O -0.493 6.493 18 C 0.006 3.994 19 C -0.191 4.191 20 C 0.019 3.981 21 N -0.275 5.275 22 N -0.330 5.330 23 C 0.501 3.499 24 F -0.168 7.168 25 F -0.158 7.158 26 C 0.125 3.875 27 H 0.075 0.925 28 C 0.166 3.834 29 H 0.251 0.749 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.166 0.834 37 H 0.193 0.807 38 H 0.164 0.836 39 H 0.033 0.967 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 -12.627 -12.062 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.184 4.184 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.077 0.923 9 N -0.306 5.306 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.130 4.130 13 H 0.114 0.886 14 C -0.033 4.033 15 N -0.354 5.354 16 C 0.387 3.613 17 O -0.366 6.366 18 C -0.120 4.120 19 C -0.219 4.219 20 C -0.161 4.161 21 N -0.104 5.104 22 N -0.127 5.127 23 C 0.368 3.632 24 F -0.149 7.149 25 F -0.139 7.139 26 C 0.022 3.978 27 H 0.093 0.907 28 C 0.039 3.961 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.183 0.817 37 H 0.210 0.790 38 H 0.180 0.820 39 H 0.050 0.950 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.924 -10.617 -12.718 17.026 hybrid contribution -0.106 0.203 0.349 0.417 sum 3.818 -10.414 -12.370 16.614 Atomic orbital electron populations 1.69965 1.05181 1.25160 1.54755 1.24995 0.95309 0.98054 1.00076 0.86303 0.78917 0.84093 0.77632 1.21304 1.21849 1.20632 1.19058 0.90355 0.83916 1.44578 0.92268 1.43422 1.27557 1.03383 1.56264 1.20730 0.97509 0.87302 0.92304 1.21862 0.94597 0.99376 0.99774 1.22692 0.98982 0.97560 0.93802 0.88636 1.23511 1.01506 0.81818 0.96483 1.49007 1.50924 1.06690 1.28765 1.16172 0.79922 0.84930 0.80247 1.90995 1.57902 1.15580 1.72158 1.21939 1.02302 0.91099 0.96660 1.22492 1.04461 0.96273 0.98714 1.23704 1.00858 0.92792 0.98704 1.73086 1.18869 1.05821 1.12656 1.46905 1.38478 1.07752 1.19525 1.21102 0.81679 0.74645 0.85727 1.93165 1.41966 1.84187 1.95576 1.93240 1.86292 1.90102 1.44246 1.22603 0.92960 0.98236 0.84030 0.90702 1.20212 0.88807 0.94747 0.92290 0.93850 0.96214 0.92616 0.92591 0.92194 0.90080 0.90613 0.81705 0.79018 0.81975 0.94970 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 10.87 55.49 0.60 -27.06 16 2 C 0.01 0.42 5.05 -17.43 -0.09 0.33 16 3 Si 0.90 23.70 29.56 -169.99 -5.03 18.68 16 4 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.25 -7.22 9.50 -15.06 -0.14 -7.36 16 8 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 9 N -0.58 -14.93 3.02 -175.07 -0.53 -15.46 16 10 C 0.15 3.05 6.46 -3.95 -0.03 3.03 16 11 C -0.12 -1.90 5.69 -26.62 -0.15 -2.06 16 12 C -0.11 -1.62 4.57 -90.46 -0.41 -2.03 16 13 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.09 1.13 6.18 -11.55 -0.07 1.06 16 15 N -0.62 -11.11 3.34 -189.46 -0.63 -11.75 16 16 C 0.60 12.34 7.94 -12.64 -0.10 12.24 16 17 O -0.49 -12.42 12.94 5.26 0.07 -12.35 16 18 C 0.01 0.11 6.85 -82.06 -0.56 -0.45 16 19 C -0.19 -2.43 10.07 -38.98 -0.39 -2.82 16 20 C 0.02 0.22 12.03 -17.43 -0.21 0.01 16 21 N -0.28 -3.82 11.90 30.59 0.36 -3.45 16 22 N -0.33 -5.30 3.61 -62.38 -0.23 -5.52 16 23 C 0.50 7.79 5.66 59.85 0.34 8.13 16 24 F -0.17 -2.97 16.45 2.25 0.04 -2.93 16 25 F -0.16 -3.06 15.97 2.25 0.04 -3.03 16 26 C 0.13 2.33 3.99 -77.97 -0.31 2.02 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 C 0.17 4.09 4.54 -5.56 -0.03 4.06 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 1.15 7.89 -51.93 -0.41 0.74 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.83 6.79 -51.93 -0.35 0.48 16 36 H 0.17 1.62 5.82 -52.49 -0.31 1.31 16 37 H 0.19 1.33 8.06 -52.48 -0.42 0.90 16 38 H 0.16 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.03 0.85 7.96 -51.93 -0.41 0.44 16 40 H 0.10 3.04 5.04 -51.93 -0.26 2.78 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -36.68 331.75 -7.11 -43.78 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.65 Total: -2.07 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: -2.16 Total: 16.16 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.42 Total: -63.24 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.07 Total: -5.96 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.03 Total: 18.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.68 -7.11 -43.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084373826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.005 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds