Wall clock time and date at job start Sat Apr 11 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99594 * 2 1 4 4 H 1.48504 * 109.46815 * 274.99473 * 3 2 1 5 5 H 1.48502 * 109.47140 * 34.99742 * 3 2 1 6 6 H 1.48493 * 109.46922 * 154.99760 * 3 2 1 7 7 C 1.38807 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99736 * 189.24683 * 7 2 1 9 9 N 1.36936 * 120.00306 * 9.24218 * 7 2 1 10 10 C 1.46532 * 119.74164 * 208.72703 * 9 7 2 11 11 C 1.53149 * 108.25074 * 236.44639 * 10 9 7 12 12 C 1.53061 * 109.21266 * 301.58794 * 11 10 9 13 13 H 1.09001 * 113.84066 * 274.48092 * 12 11 10 14 14 C 1.54083 * 111.39052 * 142.39859 * 12 11 10 15 15 N 1.47284 * 87.60562 * 273.96982 * 14 12 11 16 16 C 1.34782 * 136.53877 * 151.36050 * 15 14 12 17 17 O 1.21624 * 119.99948 * 184.90537 * 16 15 14 18 18 C 1.47156 * 120.00055 * 4.91664 * 16 15 14 19 19 C 1.38414 * 126.88554 * 6.08630 * 18 16 15 20 20 C 1.39677 * 105.35682 * 180.02562 * 19 18 16 21 21 N 1.30863 * 107.86208 * 359.97438 * 20 19 18 22 22 N 1.28439 * 110.92876 * 0.02562 * 21 20 19 23 23 C 1.46504 * 125.18872 * 180.26240 * 22 21 20 24 24 F 1.39898 * 109.47183 * 115.63217 * 23 22 21 25 25 F 1.39895 * 109.47055 * 235.63339 * 23 22 21 26 26 C 1.46464 * 86.91408 * 331.62461 * 15 14 12 27 27 H 1.08994 * 111.43972 * 276.12298 * 26 15 14 28 28 C 1.45700 * 119.73672 * 28.74959 * 9 7 2 29 29 H 0.96998 * 120.00159 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.71048 * 116.75493 * 10 9 7 31 31 H 1.09002 * 109.70683 * 356.13421 * 10 9 7 32 32 H 1.09007 * 109.51402 * 181.66315 * 11 10 9 33 33 H 1.08996 * 109.51344 * 61.51152 * 11 10 9 34 34 H 1.09006 * 113.52819 * 159.28478 * 14 12 11 35 35 H 1.09002 * 113.52871 * 28.65589 * 14 12 11 36 36 H 1.07998 * 127.31980 * 0.05446 * 19 18 16 37 37 H 1.08004 * 126.06752 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.47125 * 355.62795 * 23 22 21 39 39 H 1.08999 * 108.78684 * 260.87595 * 28 9 7 40 40 H 1.09001 * 108.78949 * 19.08776 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0798 -1.2082 0.1498 9 7 1.3390 -2.3803 -0.1915 10 6 1.8576 -3.6165 0.4000 11 6 2.0601 -4.6376 -0.7234 12 6 0.7263 -4.8730 -1.4364 13 1 0.0997 -5.6275 -0.9609 14 6 0.9243 -5.0514 -2.9540 15 7 0.8630 -3.5846 -3.0720 16 6 1.3660 -2.6480 -3.9005 17 8 1.1891 -1.4682 -3.6633 18 6 2.1288 -3.0527 -5.0920 19 6 2.3155 -4.3416 -5.5607 20 6 3.1025 -4.2080 -6.7069 21 7 3.3468 -2.9341 -6.8799 22 7 2.7948 -2.2316 -5.9570 23 6 2.8635 -0.7720 -5.8519 24 9 1.5820 -0.2325 -6.0060 25 9 3.3706 -0.4182 -4.5970 26 6 0.0143 -3.6032 -1.8785 27 1 -1.0275 -3.7972 -2.1335 28 6 0.1150 -2.3948 -0.9817 29 1 -0.4850 0.8400 0.0004 30 1 1.1429 -4.0050 1.1254 31 1 2.8098 -3.4175 0.8918 32 1 2.4183 -5.5768 -0.3016 33 1 2.7912 -4.2552 -1.4355 34 1 0.0953 -5.5624 -3.4439 35 1 1.8952 -5.4693 -3.2201 36 1 1.9334 -5.2561 -5.1317 37 1 3.4475 -5.0131 -7.3387 38 1 3.5182 -0.3820 -6.6314 39 1 -0.7396 -2.3850 -0.3053 40 1 0.0834 -1.4953 -1.5966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084373826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:11 Heat of formation + Delta-G solvation = 10.734608 kcal Electronic energy + Delta-G solvation = -29859.845151 eV Core-core repulsion = 25542.425046 eV Total energy + Delta-G solvation = -4317.420106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.36992 -48.51068 -43.60132 -41.87067 -39.08658 -37.07967 -34.14940 -33.78879 -32.52903 -31.90686 -30.17682 -28.66039 -27.35940 -25.73589 -24.96828 -23.79729 -22.75917 -22.51102 -21.38261 -19.88460 -19.24480 -18.99275 -18.54097 -18.23327 -17.44450 -17.38191 -16.94529 -16.54432 -16.09933 -15.72435 -15.60281 -15.25630 -15.14920 -14.96674 -14.81435 -14.62293 -14.57876 -14.34943 -14.27574 -13.90538 -13.51342 -13.16718 -13.14084 -12.75038 -12.74529 -12.36659 -12.22075 -12.07877 -11.97643 -11.76302 -11.48074 -11.17537 -10.78763 -10.71644 -10.45925 -10.32414 -9.56012 -8.61999 -7.85411 -5.32859 0.01159 0.67247 1.31054 1.39283 1.42368 1.51494 1.76745 2.19222 2.46275 2.53230 3.02928 3.24093 3.30378 3.43196 3.45733 3.74389 3.90483 3.94675 3.98000 4.20704 4.32342 4.46458 4.51204 4.58293 4.69925 4.70336 4.78470 4.85038 4.93819 5.08046 5.12242 5.15350 5.33076 5.42958 5.48233 5.56200 5.71351 5.84290 6.41362 6.72358 6.84179 7.15149 7.20359 7.97093 8.34990 9.18084 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.006685 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.581961 B = 4187.269976 C = 5862.676480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.041 4.041 3 Si 0.950 3.050 4 H -0.303 1.303 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.601 5.601 10 C 0.138 3.862 11 C -0.105 4.105 12 C -0.099 4.099 13 H 0.140 0.860 14 C 0.103 3.897 15 N -0.625 5.625 16 C 0.588 3.412 17 O -0.564 6.564 18 C -0.041 4.041 19 C -0.159 4.159 20 C 0.033 3.967 21 N -0.282 5.282 22 N -0.346 5.346 23 C 0.491 3.509 24 F -0.189 7.189 25 F -0.190 7.190 26 C 0.111 3.889 27 H 0.096 0.904 28 C 0.179 3.821 29 H 0.243 0.757 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.201 0.799 37 H 0.244 0.756 38 H 0.216 0.784 39 H -0.002 1.002 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -17.456 -13.724 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.236 4.236 3 Si 0.780 3.220 4 H -0.231 1.231 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.382 4.382 8 H 0.070 0.930 9 N -0.325 5.325 10 C 0.013 3.987 11 C -0.144 4.144 12 C -0.117 4.117 13 H 0.158 0.842 14 C -0.017 4.017 15 N -0.359 5.359 16 C 0.376 3.624 17 O -0.443 6.443 18 C -0.165 4.165 19 C -0.187 4.187 20 C -0.147 4.147 21 N -0.111 5.111 22 N -0.142 5.142 23 C 0.358 3.642 24 F -0.170 7.170 25 F -0.171 7.171 26 C 0.007 3.993 27 H 0.114 0.886 28 C 0.053 3.947 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.055 0.945 34 H 0.144 0.856 35 H 0.120 0.880 36 H 0.218 0.782 37 H 0.260 0.740 38 H 0.232 0.768 39 H 0.016 0.984 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.117 -15.544 -14.360 21.772 hybrid contribution -0.442 1.578 0.861 1.851 sum 4.675 -13.966 -13.499 19.978 Atomic orbital electron populations 1.70135 1.06252 1.24945 1.56533 1.25642 0.96066 1.00811 1.01112 0.85497 0.78800 0.81154 0.76573 1.23148 1.21148 1.18888 1.19284 0.90283 0.85692 1.42919 0.93042 1.43655 1.27482 1.04083 1.57238 1.20982 0.96953 0.86502 0.94220 1.21731 0.95430 0.99579 0.97650 1.22739 0.97678 0.95505 0.95810 0.84195 1.23798 1.04761 0.78423 0.94717 1.49193 1.49876 1.09243 1.27630 1.16813 0.79826 0.84511 0.81282 1.90955 1.60679 1.18542 1.74112 1.21798 1.04706 0.93177 0.96864 1.22980 1.02331 0.95423 0.97951 1.24598 0.99038 0.92755 0.98262 1.73110 1.18779 1.07048 1.12125 1.46911 1.39464 1.07660 1.20197 1.21901 0.81456 0.75343 0.85478 1.93107 1.43675 1.84692 1.95536 1.93160 1.86594 1.90603 1.46751 1.22639 0.95203 0.97386 0.84076 0.88635 1.19797 0.87320 0.95891 0.91731 0.94734 0.95196 0.93482 0.87866 0.94505 0.85606 0.87973 0.78175 0.74022 0.76842 0.98448 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.78 10.87 21.65 0.24 -60.54 16 2 C -0.04 -2.57 5.05 84.86 0.43 -2.14 16 3 Si 0.95 51.41 29.56 68.60 2.03 53.44 16 4 H -0.30 -17.13 7.11 99.48 0.71 -16.43 16 5 H -0.29 -14.96 7.11 99.48 0.71 -14.26 16 6 H -0.26 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.25 -15.25 9.50 84.03 0.80 -14.45 16 8 H 0.05 3.13 7.84 -2.91 -0.02 3.10 16 9 N -0.60 -31.83 3.02 -707.78 -2.14 -33.97 16 10 C 0.14 5.60 6.46 86.42 0.56 6.16 16 11 C -0.10 -3.06 5.69 30.66 0.17 -2.89 16 12 C -0.10 -2.42 4.57 -10.69 -0.05 -2.47 16 13 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.10 2.02 6.18 81.09 0.50 2.52 16 15 N -0.62 -21.60 3.34 -871.56 -2.91 -24.50 16 16 C 0.59 24.60 7.94 86.58 0.69 25.29 16 17 O -0.56 -30.59 12.94 -4.11 -0.05 -30.64 16 18 C -0.04 -1.33 6.85 40.79 0.28 -1.05 16 19 C -0.16 -3.31 10.07 22.66 0.23 -3.08 16 20 C 0.03 0.59 12.03 85.18 1.02 1.62 16 21 N -0.28 -7.04 11.90 -57.13 -0.68 -7.72 16 22 N -0.35 -10.87 3.61 -351.29 -1.27 -12.14 16 23 C 0.49 15.84 5.66 127.77 0.72 16.56 16 24 F -0.19 -7.17 16.45 44.97 0.74 -6.43 16 25 F -0.19 -7.92 15.97 44.97 0.72 -7.20 16 26 C 0.11 4.03 3.99 38.50 0.15 4.18 16 27 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 28 C 0.18 9.27 4.54 85.82 0.39 9.66 16 29 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.93 7.89 -2.39 -0.02 1.92 16 32 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.04 1.25 7.68 -2.39 -0.02 1.23 16 34 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.10 1.53 6.79 -2.39 -0.02 1.51 16 36 H 0.20 2.53 5.82 -2.91 -0.02 2.51 16 37 H 0.24 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.22 4.27 8.14 -2.38 -0.02 4.25 16 39 H 0.00 -0.13 7.96 -2.39 -0.02 -0.15 16 40 H 0.05 3.09 5.04 -2.39 -0.01 3.08 16 Total: -1.00 -92.93 331.75 3.66 -89.27 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.09 Total: 0.53 kcal Atomic # 6 Polarization: 34.02 SS G_CDS: 5.90 Total: 39.92 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -6.76 Total: -138.87 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 9 Polarization: -15.09 SS G_CDS: 1.46 Total: -13.64 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.03 Total: 53.44 kcal Total: -92.93 3.66 -89.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084373826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.003 kcal (2) G-P(sol) polarization free energy of solvation -92.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds