Wall clock time and date at job start Sat Apr 11 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46860 * 2 1 4 4 N 1.35642 * 126.43848 * 264.69015 * 3 2 1 5 5 H 0.96998 * 124.92932 * 359.97438 * 4 3 2 6 6 N 1.28467 * 110.13048 * 179.81132 * 4 3 2 7 7 C 1.31826 * 110.13941 * 0.46267 * 6 4 3 8 8 C 1.47660 * 126.46333 * 179.75180 * 7 6 4 9 9 O 1.21571 * 120.00341 * 175.44746 * 8 7 6 10 10 N 1.34781 * 120.00022 * 355.45560 * 8 7 6 11 11 C 1.46496 * 119.99851 * 5.15319 * 10 8 7 12 12 C 1.46507 * 119.99965 * 185.16459 * 10 8 7 13 13 C 1.52999 * 109.47487 * 84.34669 * 12 10 8 14 14 H 1.09003 * 112.96160 * 310.42333 * 13 12 10 15 15 C 1.53938 * 113.76808 * 178.73975 * 13 12 10 16 16 C 1.53952 * 86.29045 * 222.09102 * 15 13 12 17 17 N 1.47581 * 113.76706 * 82.09580 * 13 12 10 18 18 C 1.36936 * 134.49411 * 318.92740 * 17 13 12 19 19 H 1.07999 * 119.99876 * 2.30833 * 18 17 13 20 20 C 1.38810 * 119.99982 * 182.30098 * 18 17 13 21 21 N 1.31617 * 120.00230 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00184 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47043 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47359 * 120.00042 * 22 20 18 25 25 H 1.48506 * 109.47351 * 240.00554 * 22 20 18 26 26 C 1.35469 * 126.43086 * 85.00588 * 3 2 1 27 27 Cl 1.73595 * 127.23944 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.46868 * 299.99506 * 1 2 3 29 29 H 1.08996 * 109.47303 * 59.99954 * 1 2 3 30 30 H 1.09003 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47303 * 120.00046 * 2 1 3 32 32 H 1.09000 * 109.46868 * 240.00493 * 2 1 3 33 33 H 1.08996 * 109.47200 * 56.43124 * 11 10 8 34 34 H 1.09007 * 109.46883 * 176.42667 * 11 10 8 35 35 H 1.09001 * 109.47473 * 296.42430 * 11 10 8 36 36 H 1.08998 * 109.46774 * 204.34561 * 12 10 8 37 37 H 1.09001 * 109.46630 * 324.34715 * 12 10 8 38 38 H 1.08992 * 113.74274 * 336.43635 * 15 13 12 39 39 H 1.09001 * 113.74356 * 107.64372 * 15 13 12 40 40 H 1.08997 * 113.76963 * 137.90823 * 16 15 13 41 41 H 1.09000 * 113.76720 * 269.19678 * 16 15 13 42 42 H 0.96997 * 120.00406 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3960 2.1468 -1.0866 5 1 2.3733 1.8261 -2.0017 6 7 2.7718 3.3217 -0.7277 7 6 2.6931 3.4430 0.5826 8 6 3.0415 4.6388 1.3757 9 8 2.8456 4.6508 2.5755 10 7 3.5766 5.7171 0.7695 11 6 3.7083 5.7472 -0.6892 12 6 4.0268 6.8590 1.5694 13 6 5.4487 6.6009 2.0719 14 1 5.5635 5.6229 2.5393 15 6 6.0329 7.7580 2.9023 16 6 7.3424 7.5194 2.1288 17 7 6.4959 6.9127 1.0799 18 6 6.6283 6.7183 -0.2691 19 1 5.8237 6.2679 -0.8313 20 6 7.7967 7.1002 -0.9140 21 7 8.7775 7.6488 -0.2288 22 14 7.9772 6.8357 -2.7543 23 1 6.7425 6.2056 -3.2872 24 1 8.1947 8.1434 -3.4235 25 1 9.1379 5.9469 -3.0152 26 6 2.2110 2.2110 1.0858 27 17 1.9110 1.7993 2.7454 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.7315 5.5874 -1.1456 34 1 4.0997 6.7164 -0.9988 35 1 4.3918 4.9605 -1.0087 36 1 4.0164 7.7594 0.9553 37 1 3.3591 6.9919 2.4207 38 1 5.5709 8.7233 2.6957 39 1 6.1049 7.5407 3.9680 40 1 7.8414 8.4367 1.8162 41 1 8.0161 6.8125 2.6131 42 1 9.5941 7.9153 -0.6793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085645728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:26 Heat of formation + Delta-G solvation = 98.524752 kcal Electronic energy + Delta-G solvation = -26134.923607 eV Core-core repulsion = 22373.107048 eV Total energy + Delta-G solvation = -3761.816559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.86415 -39.32268 -37.60169 -36.51205 -34.95149 -34.50403 -32.20925 -31.83467 -29.64084 -28.44462 -27.66361 -26.19777 -24.12959 -23.92686 -23.23734 -21.77450 -21.26339 -19.09822 -18.70683 -18.02962 -16.84678 -16.39862 -16.09255 -15.65722 -15.10566 -14.91478 -14.68903 -14.45683 -14.10083 -13.87610 -13.52532 -13.14987 -12.84632 -12.75667 -12.49831 -12.32792 -12.02445 -12.01558 -11.54567 -11.43264 -11.28563 -11.08565 -11.03314 -10.89444 -10.66506 -10.57268 -10.41795 -9.98956 -9.61235 -9.53645 -9.47582 -9.20361 -8.86816 -8.72385 -8.07209 -6.76930 -5.69159 -2.99203 1.49699 1.75843 1.99421 2.82739 3.35755 3.39705 3.42734 3.47067 3.61254 4.19891 4.41404 4.49387 4.53138 4.85042 4.98972 5.12614 5.19318 5.24591 5.46393 5.50631 5.63250 5.69927 5.75873 5.81767 5.85627 5.92650 6.01963 6.12414 6.20082 6.33227 6.43909 6.55744 6.68102 6.74327 6.82288 7.07810 7.36377 7.53054 7.60884 7.67507 7.82244 8.06938 8.51835 9.12447 9.79884 10.72699 11.48900 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003974 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.415207 B = 7043.407378 C = 8315.713553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C 0.027 3.973 4 N -0.379 5.379 5 H 0.449 0.551 6 N -0.234 5.234 7 C 0.015 3.985 8 C 0.592 3.408 9 O -0.526 6.526 10 N -0.586 5.586 11 C 0.090 3.910 12 C 0.120 3.880 13 C 0.128 3.872 14 H 0.046 0.954 15 C -0.159 4.159 16 C 0.161 3.839 17 N -0.603 5.603 18 C -0.222 4.222 19 H 0.091 0.909 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.293 1.293 26 C -0.100 4.100 27 Cl -0.010 7.010 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.746 -13.042 -0.656 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.099 4.099 4 N -0.094 5.094 5 H 0.295 0.705 6 N -0.070 5.070 7 C -0.148 4.148 8 C 0.377 3.623 9 O -0.401 6.401 10 N -0.317 5.317 11 C -0.053 4.053 12 C -0.003 4.003 13 C 0.020 3.980 14 H 0.064 0.936 15 C -0.198 4.198 16 C 0.036 3.964 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.109 0.891 20 C -0.208 4.208 21 N -0.569 5.569 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.220 1.220 26 C -0.138 4.138 27 Cl 0.019 6.981 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.399 -12.404 -1.120 20.592 hybrid contribution 0.269 -0.976 -0.919 1.368 sum -16.130 -13.381 -2.039 21.056 Atomic orbital electron populations 1.21765 0.93679 1.02422 1.02791 1.20159 0.96729 0.88094 1.04387 1.21143 1.05457 0.96803 0.86534 1.43328 1.47700 1.08775 1.09616 0.70526 1.74018 1.17034 1.01810 1.14093 1.21988 1.06904 0.96281 0.89594 1.16787 0.78289 0.81100 0.86126 1.90795 1.54706 1.81272 1.13341 1.47609 1.59126 1.16684 1.08242 1.22039 1.00897 1.03812 0.78578 1.22005 0.95893 0.87202 0.95235 1.22609 0.89145 0.96220 0.90022 0.93623 1.23762 1.00410 0.98319 0.97282 1.22165 0.91126 0.97118 0.85987 1.46225 1.16477 1.68214 1.01999 1.19442 1.00212 1.33952 0.81350 0.89142 1.24776 0.96335 1.02064 0.97580 1.69838 1.06127 1.46938 1.33983 0.86204 0.77530 0.77372 0.85665 1.20467 1.21843 1.22010 1.20457 1.10879 0.94559 0.87898 1.98348 1.94406 1.92809 1.12539 0.91721 0.92597 0.91524 0.88778 0.90159 0.92656 0.89509 0.91464 0.89684 0.90459 0.90732 0.92930 0.91242 0.95812 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.52 16 2 C -0.05 -0.37 6.36 -27.88 -0.18 -0.54 16 3 C 0.03 0.29 6.51 -81.90 -0.53 -0.25 16 4 N -0.38 -3.86 6.86 33.62 0.23 -3.63 16 5 H 0.45 2.73 8.96 -190.44 -1.71 1.02 16 6 N -0.23 -3.33 8.88 33.42 0.30 -3.03 16 7 C 0.01 0.24 6.89 -82.76 -0.57 -0.33 16 8 C 0.59 11.20 7.63 -12.41 -0.09 11.10 16 9 O -0.53 -10.87 15.53 5.30 0.08 -10.78 16 10 N -0.59 -10.87 2.89 -182.76 -0.53 -11.40 16 11 C 0.09 1.54 7.25 59.84 0.43 1.98 16 12 C 0.12 2.25 5.26 -4.04 -0.02 2.23 16 13 C 0.13 2.75 4.49 -66.87 -0.30 2.45 16 14 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 15 C -0.16 -3.12 7.86 -25.79 -0.20 -3.33 16 16 C 0.16 3.90 7.46 -2.84 -0.02 3.88 16 17 N -0.60 -15.33 3.59 -169.72 -0.61 -15.94 16 18 C -0.22 -5.99 10.25 -15.06 -0.15 -6.14 16 19 H 0.09 2.27 3.73 -52.49 -0.20 2.08 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.92 -27.47 11.46 55.49 0.64 -26.83 16 22 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C -0.10 -1.43 6.79 -39.31 -0.27 -1.69 16 27 Cl -0.01 -0.13 28.03 -51.86 -1.45 -1.59 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.83 7.27 -51.93 -0.38 0.45 16 34 H 0.09 1.56 6.48 -51.92 -0.34 1.22 16 35 H 0.07 1.25 6.74 -51.93 -0.35 0.90 16 36 H 0.08 1.57 7.78 -51.93 -0.40 1.17 16 37 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 38 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.82 7.28 -51.93 -0.38 1.44 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -34.00 357.56 -9.69 -43.69 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.08 Total: -1.15 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.64 Total: 8.42 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.03 Total: -60.83 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.45 Total: -1.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.00 -9.69 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085645728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.213 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds