Wall clock time and date at job start Sat Apr 11 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46860 * 2 1 4 4 N 1.35642 * 126.43848 * 264.69015 * 3 2 1 5 5 H 0.96998 * 124.92932 * 359.97438 * 4 3 2 6 6 N 1.28467 * 110.13048 * 179.81132 * 4 3 2 7 7 C 1.31826 * 110.13941 * 0.46267 * 6 4 3 8 8 C 1.47660 * 126.46333 * 179.75180 * 7 6 4 9 9 O 1.21571 * 120.00341 * 175.44746 * 8 7 6 10 10 N 1.34781 * 120.00022 * 355.45560 * 8 7 6 11 11 C 1.46496 * 119.99851 * 5.15319 * 10 8 7 12 12 C 1.46507 * 119.99965 * 185.16459 * 10 8 7 13 13 C 1.52999 * 109.47487 * 84.34669 * 12 10 8 14 14 H 1.09003 * 112.96160 * 310.42333 * 13 12 10 15 15 C 1.53938 * 113.76808 * 178.73975 * 13 12 10 16 16 C 1.53952 * 86.29045 * 222.09102 * 15 13 12 17 17 N 1.47581 * 113.76706 * 82.09580 * 13 12 10 18 18 C 1.36936 * 134.49411 * 318.92740 * 17 13 12 19 19 H 1.07999 * 119.99876 * 2.30833 * 18 17 13 20 20 C 1.38810 * 119.99982 * 182.30098 * 18 17 13 21 21 N 1.31617 * 120.00230 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00184 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47043 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47359 * 120.00042 * 22 20 18 25 25 H 1.48506 * 109.47351 * 240.00554 * 22 20 18 26 26 C 1.35469 * 126.43086 * 85.00588 * 3 2 1 27 27 Cl 1.73595 * 127.23944 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.46868 * 299.99506 * 1 2 3 29 29 H 1.08996 * 109.47303 * 59.99954 * 1 2 3 30 30 H 1.09003 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47303 * 120.00046 * 2 1 3 32 32 H 1.09000 * 109.46868 * 240.00493 * 2 1 3 33 33 H 1.08996 * 109.47200 * 56.43124 * 11 10 8 34 34 H 1.09007 * 109.46883 * 176.42667 * 11 10 8 35 35 H 1.09001 * 109.47473 * 296.42430 * 11 10 8 36 36 H 1.08998 * 109.46774 * 204.34561 * 12 10 8 37 37 H 1.09001 * 109.46630 * 324.34715 * 12 10 8 38 38 H 1.08992 * 113.74274 * 336.43635 * 15 13 12 39 39 H 1.09001 * 113.74356 * 107.64372 * 15 13 12 40 40 H 1.08997 * 113.76963 * 137.90823 * 16 15 13 41 41 H 1.09000 * 113.76720 * 269.19678 * 16 15 13 42 42 H 0.96997 * 120.00406 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3960 2.1468 -1.0866 5 1 2.3733 1.8261 -2.0017 6 7 2.7718 3.3217 -0.7277 7 6 2.6931 3.4430 0.5826 8 6 3.0415 4.6388 1.3757 9 8 2.8456 4.6508 2.5755 10 7 3.5766 5.7171 0.7695 11 6 3.7083 5.7472 -0.6892 12 6 4.0268 6.8590 1.5694 13 6 5.4487 6.6009 2.0719 14 1 5.5635 5.6229 2.5393 15 6 6.0329 7.7580 2.9023 16 6 7.3424 7.5194 2.1288 17 7 6.4959 6.9127 1.0799 18 6 6.6283 6.7183 -0.2691 19 1 5.8237 6.2679 -0.8313 20 6 7.7967 7.1002 -0.9140 21 7 8.7775 7.6488 -0.2288 22 14 7.9772 6.8357 -2.7543 23 1 6.7425 6.2056 -3.2872 24 1 8.1947 8.1434 -3.4235 25 1 9.1379 5.9469 -3.0152 26 6 2.2110 2.2110 1.0858 27 17 1.9110 1.7993 2.7454 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.7315 5.5874 -1.1456 34 1 4.0997 6.7164 -0.9988 35 1 4.3918 4.9605 -1.0087 36 1 4.0164 7.7594 0.9553 37 1 3.3591 6.9919 2.4207 38 1 5.5709 8.7233 2.6957 39 1 6.1049 7.5407 3.9680 40 1 7.8414 8.4367 1.8162 41 1 8.0161 6.8125 2.6131 42 1 9.5941 7.9153 -0.6793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085645728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:26 Heat of formation + Delta-G solvation = 76.346685 kcal Electronic energy + Delta-G solvation = -26135.885320 eV Core-core repulsion = 22373.107048 eV Total energy + Delta-G solvation = -3762.778272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.86242 -40.81963 -39.34742 -37.54680 -36.39580 -35.22764 -34.23632 -32.93319 -30.62503 -30.06147 -29.44456 -27.62642 -25.39711 -25.21603 -24.74474 -23.25784 -22.18168 -20.89570 -20.08436 -18.99634 -18.69486 -17.71079 -17.21689 -17.15434 -16.78318 -16.18152 -15.92203 -15.78001 -15.37313 -15.15550 -14.74840 -14.68958 -14.42704 -13.92840 -13.68701 -13.45999 -13.25247 -13.06689 -13.03140 -12.93654 -12.73609 -12.66048 -12.46926 -12.23732 -12.11653 -12.00471 -11.72835 -11.66036 -11.44426 -11.15413 -10.97915 -10.80077 -10.49308 -9.86536 -9.56603 -8.82868 -7.81393 -5.12855 0.37489 0.75755 1.03302 1.45804 1.47055 1.56412 1.80460 2.13010 2.27045 2.51524 3.23201 3.36235 3.46905 3.51241 3.74957 3.98601 4.04843 4.28266 4.34164 4.35905 4.41129 4.43852 4.53937 4.65524 4.69409 4.74315 4.84506 4.91920 5.01717 5.02898 5.04580 5.08575 5.12647 5.37380 5.37750 5.53190 5.65462 5.74866 5.92681 6.00458 6.37121 6.62760 7.00462 7.10195 7.71395 8.68023 9.37321 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003974 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.415207 B = 7043.407378 C = 8315.713553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C 0.055 3.945 4 N -0.356 5.356 5 H 0.469 0.531 6 N -0.243 5.243 7 C -0.019 4.019 8 C 0.587 3.413 9 O -0.552 6.552 10 N -0.592 5.592 11 C 0.099 3.901 12 C 0.128 3.872 13 C 0.129 3.871 14 H 0.025 0.975 15 C -0.130 4.130 16 C 0.153 3.847 17 N -0.624 5.624 18 C -0.220 4.220 19 H 0.107 0.893 20 C -0.076 4.076 21 N -0.960 5.960 22 Si 0.964 3.036 23 H -0.255 1.255 24 H -0.295 1.295 25 H -0.303 1.303 26 C -0.129 4.129 27 Cl -0.017 7.017 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.006 0.994 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.936 -14.725 -2.146 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.073 4.073 4 N -0.075 5.075 5 H 0.319 0.681 6 N -0.079 5.079 7 C -0.180 4.180 8 C 0.373 3.627 9 O -0.429 6.429 10 N -0.323 5.323 11 C -0.044 4.044 12 C 0.005 3.995 13 C 0.022 3.978 14 H 0.043 0.957 15 C -0.169 4.169 16 C 0.028 3.972 17 N -0.350 5.350 18 C -0.348 4.348 19 H 0.125 0.875 20 C -0.268 4.268 21 N -0.610 5.610 22 Si 0.793 3.207 23 H -0.178 1.178 24 H -0.222 1.222 25 H -0.231 1.231 26 C -0.166 4.166 27 Cl 0.012 6.988 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -18.634 -14.104 -2.630 23.517 hybrid contribution 0.898 -0.568 -0.445 1.152 sum -17.735 -14.672 -3.075 23.222 Atomic orbital electron populations 1.21757 0.92838 1.03628 1.02201 1.20391 0.97257 0.85558 1.06110 1.21645 1.02698 0.97737 0.85201 1.43440 1.45688 1.07605 1.10733 0.68101 1.73900 1.17394 1.03537 1.13117 1.21729 1.09439 0.96293 0.90524 1.17167 0.77653 0.81691 0.86160 1.90758 1.55797 1.81897 1.14495 1.47697 1.59143 1.16733 1.08721 1.21954 1.01804 1.02645 0.77966 1.21835 0.94167 0.87598 0.95920 1.22657 0.90037 0.95849 0.89227 0.95718 1.23562 0.96644 0.98461 0.98209 1.22114 0.92694 0.95557 0.86873 1.46611 1.17862 1.68317 1.02211 1.19985 1.00262 1.32056 0.82510 0.87527 1.25597 0.96442 1.02937 1.01828 1.70042 1.06527 1.48984 1.35493 0.85203 0.77855 0.76834 0.80815 1.17826 1.22193 1.23064 1.20673 1.12593 0.94777 0.88573 1.98335 1.94511 1.92727 1.13248 0.93477 0.92059 0.89463 0.88625 0.86873 0.90349 0.90350 0.92865 0.89178 0.89150 0.88859 0.90156 0.93820 0.97586 0.94846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 71.98 0.71 -0.56 16 2 C -0.05 -0.54 6.36 29.85 0.19 -0.35 16 3 C 0.06 1.01 6.51 41.33 0.27 1.28 16 4 N -0.36 -6.22 6.86 -47.55 -0.33 -6.55 16 5 H 0.47 3.93 8.96 -219.99 -1.97 1.96 16 6 N -0.24 -6.43 8.88 -48.17 -0.43 -6.86 16 7 C -0.02 -0.62 6.89 42.45 0.29 -0.33 16 8 C 0.59 22.03 7.63 86.73 0.66 22.69 16 9 O -0.55 -22.90 15.53 -3.94 -0.06 -22.96 16 10 N -0.59 -21.57 2.89 -850.39 -2.45 -24.03 16 11 C 0.10 3.28 7.25 127.77 0.93 4.20 16 12 C 0.13 4.69 5.26 86.38 0.45 5.14 16 13 C 0.13 5.52 4.49 45.09 0.20 5.72 16 14 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 15 C -0.13 -4.99 7.86 31.25 0.25 -4.74 16 16 C 0.15 7.58 7.46 86.44 0.65 8.23 16 17 N -0.62 -32.00 3.59 -690.88 -2.48 -34.47 16 18 C -0.22 -11.90 10.25 84.03 0.86 -11.04 16 19 H 0.11 5.28 3.73 -2.91 -0.01 5.27 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.96 -58.92 11.46 21.65 0.25 -58.67 16 22 Si 0.96 45.22 29.55 68.60 2.03 47.24 16 23 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 26 C -0.13 -3.50 6.79 22.45 0.15 -3.35 16 27 Cl -0.02 -0.46 28.03 -2.72 -0.08 -0.54 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 2.21 7.27 -2.39 -0.02 2.19 16 34 H 0.08 2.71 6.48 -2.38 -0.02 2.69 16 35 H 0.05 1.91 6.74 -2.39 -0.02 1.90 16 36 H 0.09 3.21 7.78 -2.39 -0.02 3.19 16 37 H 0.09 3.09 7.53 -2.39 -0.02 3.07 16 38 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 39 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.04 2.37 7.28 -2.39 -0.02 2.35 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -75.86 357.56 1.62 -74.23 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -0.91 Total: 9.57 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.08 Total: 23.03 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -5.44 Total: -130.58 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.06 Total: -22.96 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -75.86 1.62 -74.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085645728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.581 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds