Wall clock time and date at job start Sat Apr 11 2020 01:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30410 * 125.97086 * 2 1 4 4 N 1.39933 * 108.95793 * 180.26051 * 3 2 1 5 5 C 1.46493 * 125.74985 * 179.71227 * 4 3 2 6 6 C 1.34342 * 108.49641 * 359.70862 * 4 3 2 7 7 Cl 1.73600 * 126.31568 * 179.97438 * 6 4 3 8 8 C 1.38277 * 107.36700 * 0.02562 * 6 4 3 9 9 C 1.47298 * 126.43728 * 179.97438 * 8 6 4 10 10 O 1.21618 * 119.99916 * 90.02310 * 9 8 6 11 11 N 1.34780 * 120.00178 * 270.02371 * 9 8 6 12 12 C 1.46502 * 119.99823 * 0.02562 * 11 9 8 13 13 C 1.46492 * 120.00067 * 180.02562 * 11 9 8 14 14 C 1.52998 * 109.47455 * 95.66891 * 13 11 9 15 15 H 1.09002 * 112.96523 * 65.85719 * 14 13 11 16 16 C 1.53944 * 113.76800 * 294.17979 * 14 13 11 17 17 C 1.53943 * 86.29231 * 222.09140 * 16 14 13 18 18 N 1.47585 * 86.24015 * 23.54903 * 17 16 14 19 19 C 1.36934 * 134.49297 * 155.42698 * 18 17 16 20 20 H 1.08003 * 119.99968 * 175.10121 * 19 18 17 21 21 C 1.38809 * 120.00028 * 355.10572 * 19 18 17 22 22 N 1.31620 * 119.99909 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00246 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46936 * 89.99512 * 23 21 19 25 25 H 1.48498 * 109.47462 * 209.99604 * 23 21 19 26 26 H 1.48498 * 109.46879 * 329.99974 * 23 21 19 27 27 H 1.09002 * 109.47019 * 270.21322 * 1 2 3 28 28 H 1.08996 * 109.47320 * 30.22241 * 1 2 3 29 29 H 1.09004 * 109.46289 * 150.21972 * 1 2 3 30 30 H 1.09003 * 109.47187 * 270.00160 * 5 4 3 31 31 H 1.09005 * 109.47571 * 29.99685 * 5 4 3 32 32 H 1.08998 * 109.47555 * 150.00212 * 5 4 3 33 33 H 1.09000 * 109.46683 * 275.18657 * 12 11 9 34 34 H 1.09004 * 109.47180 * 35.17447 * 12 11 9 35 35 H 1.08990 * 109.47545 * 155.18440 * 12 11 9 36 36 H 1.09000 * 109.47348 * 335.66226 * 13 11 9 37 37 H 1.09006 * 109.46730 * 215.66748 * 13 11 9 38 38 H 1.09001 * 113.74376 * 107.74297 * 16 14 13 39 39 H 1.09005 * 113.74339 * 336.43613 * 16 14 13 40 40 H 1.08996 * 113.77567 * 137.90519 * 17 16 14 41 41 H 1.09005 * 113.76807 * 269.19351 * 17 16 14 42 42 H 0.97006 * 119.99541 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6112 0.6460 -0.0060 5 6 4.7774 1.5325 -0.0139 6 6 3.6460 -0.6970 -0.0033 7 17 5.0709 -1.6885 -0.0091 8 6 2.3374 -1.1437 0.0039 9 6 1.8923 -2.5479 0.0085 10 8 1.7133 -3.1255 1.0637 11 7 1.6835 -3.1925 -1.1565 12 6 1.8997 -2.4968 -2.4276 13 6 1.2404 -4.5888 -1.1519 14 6 -0.2827 -4.6410 -1.2878 15 1 -0.6365 -4.2746 -2.2515 16 6 -1.0338 -4.0448 -0.0836 17 6 -1.9889 -5.2453 -0.2123 18 7 -0.8739 -5.9357 -0.8891 19 6 -0.5274 -7.2478 -1.0725 20 1 0.3224 -7.5008 -1.6891 21 6 -1.2685 -8.2526 -0.4658 22 7 -2.3038 -7.9442 0.2860 23 14 -0.7963 -10.0424 -0.7165 24 1 0.1629 -10.4539 0.3399 25 1 -2.0125 -10.8909 -0.6384 26 1 -0.1638 -10.2054 -2.0501 27 1 -0.3633 0.0038 1.0277 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3632 -0.8920 -0.5105 30 1 5.0614 1.7502 -1.0435 31 1 4.5308 2.4621 0.4992 32 1 5.6079 1.0449 0.4966 33 1 1.0023 -1.9379 -2.6930 34 1 2.7394 -1.8091 -2.3272 35 1 2.1180 -3.2255 -3.2081 36 1 1.5381 -5.0614 -0.2159 37 1 1.6981 -5.1180 -1.9878 38 1 -1.5054 -3.0845 -0.2921 39 1 -0.4531 -4.0430 0.8389 40 1 -2.2662 -5.6906 0.7431 41 1 -2.8463 -5.0572 -0.8586 42 1 -2.8214 -8.6464 0.7103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085747522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:28 Heat of formation + Delta-G solvation = 80.480818 kcal Electronic energy + Delta-G solvation = -26150.492074 eV Core-core repulsion = 22387.893072 eV Total energy + Delta-G solvation = -3762.599003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63026 -40.73798 -39.22703 -38.15324 -36.40650 -35.14043 -34.17659 -31.83442 -30.58761 -29.82279 -29.65084 -27.62742 -26.68377 -25.23468 -24.45565 -22.83441 -21.56304 -20.81495 -20.22096 -18.75013 -18.41854 -17.71768 -17.11310 -16.94278 -16.79224 -16.45693 -15.89984 -15.70562 -15.16403 -14.79065 -14.46530 -14.32835 -14.12204 -13.95490 -13.80879 -13.65120 -13.55638 -13.34167 -13.23478 -13.06819 -12.88957 -12.85574 -12.76957 -12.53751 -12.44262 -12.23028 -11.89524 -11.75281 -11.51699 -11.24439 -10.99953 -10.78457 -10.35019 -9.75232 -9.61838 -8.82707 -7.82926 -5.17088 0.13762 0.28548 1.17972 1.45458 1.46738 1.49431 1.51620 1.57091 2.07592 2.53104 3.20122 3.37366 3.47801 3.73387 3.79300 4.00260 4.18179 4.23395 4.30822 4.32882 4.33706 4.39286 4.54259 4.60022 4.66765 4.72776 4.79176 4.82861 4.89673 4.92083 4.92502 5.09494 5.14653 5.29984 5.31838 5.51316 5.55337 5.60649 5.83446 6.02015 6.30721 6.42336 6.97108 7.19223 7.67698 8.64631 9.33425 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.003308 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.950896 B = 8463.346583 C = 9193.000610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.118 3.882 3 N -0.283 5.283 4 N -0.347 5.347 5 C 0.081 3.919 6 C 0.154 3.846 7 Cl 0.021 6.979 8 C -0.269 4.269 9 C 0.597 3.403 10 O -0.567 6.567 11 N -0.593 5.593 12 C 0.081 3.919 13 C 0.130 3.870 14 C 0.136 3.864 15 H 0.066 0.934 16 C -0.132 4.132 17 C 0.149 3.851 18 N -0.629 5.629 19 C -0.225 4.225 20 H 0.087 0.913 21 C -0.073 4.073 22 N -0.956 5.956 23 Si 0.976 3.024 24 H -0.290 1.290 25 H -0.297 1.297 26 H -0.264 1.264 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.022 0.978 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.379 23.164 -6.018 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 N -0.107 5.107 4 N -0.128 5.128 5 C -0.058 4.058 6 C -0.005 4.005 7 Cl 0.049 6.951 8 C -0.286 4.286 9 C 0.384 3.616 10 O -0.446 6.446 11 N -0.325 5.325 12 C -0.061 4.061 13 C 0.006 3.994 14 C 0.030 3.970 15 H 0.084 0.916 16 C -0.170 4.170 17 C 0.024 3.976 18 N -0.356 5.356 19 C -0.353 4.353 20 H 0.105 0.895 21 C -0.265 4.265 22 N -0.605 5.605 23 Si 0.805 3.195 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.189 1.189 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.586 23.817 -5.476 28.986 hybrid contribution 0.103 -2.322 0.190 2.332 sum 15.689 21.494 -5.287 27.131 Atomic orbital electron populations 1.20412 0.84129 1.04856 1.04388 1.22557 0.98046 0.87713 0.96460 1.77243 0.85419 1.21403 1.26615 1.48704 1.07186 1.02488 1.54455 1.22498 0.82656 0.94508 1.06138 1.21921 0.89689 0.84937 1.03921 1.98444 1.34637 1.65433 1.96603 1.19688 0.91459 0.94371 1.23039 1.17409 0.76323 0.84653 0.83255 1.90810 1.52784 1.68412 1.32571 1.47720 1.65582 1.12352 1.06835 1.21936 1.02157 0.97961 0.84009 1.21479 0.94612 0.81027 1.02329 1.22729 0.92827 0.85117 0.96366 0.91644 1.23501 0.98136 0.96949 0.98403 1.22201 0.90507 0.89157 0.95765 1.46296 1.25378 0.99922 1.63974 1.19407 1.10288 0.81672 1.23938 0.89546 1.25638 0.98476 1.02009 1.00393 1.70042 1.21274 1.31903 1.37285 0.85107 0.76527 0.79773 0.78120 1.21689 1.22321 1.18901 0.89531 0.87915 0.90162 0.87613 0.86912 0.87715 0.91122 0.91157 0.89090 0.92588 0.89674 0.90391 0.91719 0.94368 0.96062 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.28 71.24 0.73 -0.81 16 2 C 0.12 2.79 7.26 43.53 0.32 3.11 16 3 N -0.28 -6.26 12.49 -46.66 -0.58 -6.84 16 4 N -0.35 -6.45 3.98 -357.42 -1.42 -7.87 16 5 C 0.08 0.67 11.28 127.77 1.44 2.11 16 6 C 0.15 3.43 7.22 84.32 0.61 4.04 16 7 Cl 0.02 0.41 28.56 -2.72 -0.08 0.33 16 8 C -0.27 -7.19 4.20 -20.12 -0.08 -7.27 16 9 C 0.60 19.49 6.66 86.63 0.58 20.07 16 10 O -0.57 -24.14 15.08 -4.09 -0.06 -24.20 16 11 N -0.59 -17.23 2.80 -850.83 -2.38 -19.61 16 12 C 0.08 1.59 10.20 127.77 1.30 2.90 16 13 C 0.13 4.68 5.44 86.38 0.47 5.15 16 14 C 0.14 5.49 4.58 45.05 0.21 5.69 16 15 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.13 -5.44 7.28 31.25 0.23 -5.21 16 17 C 0.15 7.58 7.64 86.48 0.66 8.24 16 18 N -0.63 -33.12 3.58 -690.93 -2.48 -35.60 16 19 C -0.22 -12.80 10.52 84.03 0.88 -11.92 16 20 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 21 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 22 N -0.96 -60.15 11.30 21.65 0.24 -59.90 16 23 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.63 8.01 -2.38 -0.02 1.61 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.10 0.60 7.77 -2.39 -0.02 0.59 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.25 6.85 -2.39 -0.02 1.24 16 35 H 0.09 1.50 7.89 -2.39 -0.02 1.48 16 36 H 0.06 2.49 7.26 -2.39 -0.02 2.47 16 37 H 0.09 2.77 7.95 -2.38 -0.02 2.75 16 38 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.06 3.00 6.62 -2.38 -0.02 2.99 16 40 H 0.04 2.22 6.94 -2.39 -0.02 2.20 16 41 H 0.02 1.07 8.14 -2.38 -0.02 1.06 16 42 H 0.25 15.04 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -78.75 367.29 4.11 -74.64 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.03 Total: 7.62 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.81 Total: 22.29 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -6.62 Total: -129.83 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -0.08 Total: 0.33 kcal Total: -78.75 4.11 -74.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085747522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.122 kcal (2) G-P(sol) polarization free energy of solvation -78.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds