Wall clock time and date at job start Sat Apr 11 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30413 * 125.98099 * 2 1 4 4 N 1.39918 * 108.96477 * 180.26104 * 3 2 1 5 5 C 1.46498 * 125.75581 * 179.67594 * 4 3 2 6 6 C 1.34355 * 108.50003 * 359.71607 * 4 3 2 7 7 Cl 1.73601 * 126.31723 * 180.02562 * 6 4 3 8 8 C 1.38276 * 107.36290 * 359.97438 * 6 4 3 9 9 C 1.47296 * 126.44040 * 179.97438 * 8 6 4 10 10 O 1.21626 * 119.99484 * 90.02515 * 9 8 6 11 11 N 1.34770 * 120.00076 * 269.75962 * 9 8 6 12 12 C 1.46503 * 120.00062 * 355.54862 * 11 9 8 13 13 C 1.46507 * 119.99943 * 175.55495 * 11 9 8 14 14 C 1.53001 * 109.46866 * 84.43404 * 13 11 9 15 15 H 1.08999 * 112.96532 * 294.05620 * 14 13 11 16 16 C 1.53946 * 113.77052 * 65.73771 * 14 13 11 17 17 C 1.53943 * 86.29060 * 137.90471 * 16 14 13 18 18 N 1.47580 * 113.76487 * 162.37780 * 14 13 11 19 19 C 1.36938 * 134.49209 * 41.07674 * 18 14 13 20 20 H 1.07999 * 120.00023 * 353.55123 * 19 18 14 21 21 C 1.38819 * 119.99680 * 173.56131 * 19 18 14 22 22 N 1.31619 * 120.00084 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47409 * 89.99568 * 23 21 19 25 25 H 1.48491 * 109.47348 * 209.99965 * 23 21 19 26 26 H 1.48506 * 109.47199 * 330.00027 * 23 21 19 27 27 H 1.08998 * 109.47375 * 270.21643 * 1 2 3 28 28 H 1.08999 * 109.47305 * 30.21834 * 1 2 3 29 29 H 1.09005 * 109.47250 * 150.21719 * 1 2 3 30 30 H 1.09000 * 109.47439 * 270.04577 * 5 4 3 31 31 H 1.09005 * 109.46602 * 30.04251 * 5 4 3 32 32 H 1.09001 * 109.47728 * 150.03964 * 5 4 3 33 33 H 1.09007 * 109.46502 * 90.00503 * 12 11 9 34 34 H 1.09000 * 109.47057 * 210.00098 * 12 11 9 35 35 H 1.08987 * 109.47130 * 330.00789 * 12 11 9 36 36 H 1.08996 * 109.47142 * 204.43416 * 13 11 9 37 37 H 1.08999 * 109.47276 * 324.43840 * 13 11 9 38 38 H 1.08996 * 113.74546 * 252.25350 * 16 14 13 39 39 H 1.09002 * 113.74031 * 23.45738 * 16 14 13 40 40 H 1.09002 * 113.76906 * 90.69482 * 17 16 14 41 41 H 1.09001 * 113.76938 * 221.98214 * 17 16 14 42 42 H 0.97000 * 119.99639 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6111 0.6459 -0.0060 5 6 4.7775 1.5322 -0.0147 6 6 3.6459 -0.6972 -0.0034 7 17 5.0708 -1.6888 -0.0081 8 6 2.3373 -1.1439 0.0048 9 6 1.8921 -2.5480 0.0097 10 8 1.7139 -3.1257 1.0650 11 7 1.6770 -3.1908 -1.1552 12 6 1.7912 -2.4664 -2.4235 13 6 1.3289 -4.6139 -1.1531 14 6 -0.1786 -4.7698 -0.9436 15 1 -0.5079 -4.4367 0.0406 16 6 -1.0268 -4.2150 -2.1024 17 6 -1.8918 -5.4782 -1.9417 18 7 -0.6983 -6.0968 -1.3272 19 6 -0.2526 -7.3826 -1.1748 20 1 0.7296 -7.5689 -0.7664 21 6 -1.0634 -8.4466 -1.5457 22 7 -2.2607 -8.2196 -2.0431 23 14 -0.4553 -10.2007 -1.3386 24 1 -0.8369 -10.7014 0.0064 25 1 -1.0683 -11.0634 -2.3802 26 1 1.0230 -10.2317 -1.4771 27 1 -0.3634 0.0039 1.0276 28 1 -0.3634 0.8880 -0.5172 29 1 -0.3634 -0.8920 -0.5105 30 1 5.0608 1.7499 -1.0445 31 1 4.5312 2.4617 0.4986 32 1 5.6082 1.0446 0.4954 33 1 2.8167 -2.5308 -2.7875 34 1 1.1170 -2.9091 -3.1567 35 1 1.5252 -1.4207 -2.2699 36 1 1.6110 -5.0583 -2.1076 37 1 1.8618 -5.1171 -0.3464 38 1 -1.5506 -3.2906 -1.8594 39 1 -0.4933 -4.1643 -3.0516 40 1 -2.7256 -5.3547 -1.2505 41 1 -2.1873 -5.9316 -2.8879 42 1 -2.8273 -8.9631 -2.3019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085747523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:31 Heat of formation + Delta-G solvation = 101.774265 kcal Electronic energy + Delta-G solvation = -25986.225480 eV Core-core repulsion = 22224.549830 eV Total energy + Delta-G solvation = -3761.675650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.73964 -39.38215 -37.63786 -37.28634 -35.04071 -34.37416 -32.09399 -30.83232 -29.84366 -28.44648 -27.77976 -26.63694 -25.69778 -23.32033 -23.05430 -21.64881 -20.62576 -19.34964 -18.90890 -17.57449 -16.74137 -16.44045 -16.11056 -15.79114 -15.49443 -14.89271 -14.60144 -14.10686 -13.82262 -13.73545 -13.45728 -13.32965 -13.05074 -12.92973 -12.67442 -12.55492 -12.46794 -12.26991 -12.04295 -12.01255 -11.97817 -11.33255 -11.00730 -10.98931 -10.80409 -10.66392 -10.40220 -9.84957 -9.80214 -9.64152 -9.54225 -9.40697 -8.83577 -8.72557 -8.27039 -6.78245 -5.70197 -3.01153 1.01534 1.16801 2.09784 2.18586 2.69917 3.27913 3.44315 3.49776 3.50774 4.01488 4.49129 4.53806 4.67792 4.78492 4.83651 4.95362 5.12906 5.20003 5.32128 5.45753 5.46636 5.56383 5.58504 5.60854 5.67093 5.78071 5.89623 6.05366 6.10280 6.25402 6.25567 6.34363 6.50413 6.69909 6.78021 6.92340 7.16964 7.32651 7.49444 7.63148 7.64867 8.05627 8.39216 9.12542 9.78817 10.69822 11.47874 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.003210 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.115418 B = 8721.113862 C = 9526.620956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.120 3.880 3 N -0.274 5.274 4 N -0.357 5.357 5 C 0.094 3.906 6 C 0.154 3.846 7 Cl 0.011 6.989 8 C -0.244 4.244 9 C 0.591 3.409 10 O -0.523 6.523 11 N -0.596 5.596 12 C 0.082 3.918 13 C 0.120 3.880 14 C 0.130 3.870 15 H 0.050 0.950 16 C -0.159 4.159 17 C 0.166 3.834 18 N -0.602 5.602 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.043 22.066 -0.569 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 N -0.098 5.098 4 N -0.139 5.139 5 C -0.047 4.047 6 C -0.003 4.003 7 Cl 0.039 6.961 8 C -0.260 4.260 9 C 0.376 3.624 10 O -0.398 6.398 11 N -0.329 5.329 12 C -0.061 4.061 13 C -0.003 4.003 14 C 0.022 3.978 15 H 0.067 0.933 16 C -0.198 4.198 17 C 0.041 3.959 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.227 22.648 -0.048 26.228 hybrid contribution 0.613 -1.895 0.215 2.003 sum 13.839 20.754 0.167 24.945 Atomic orbital electron populations 1.20346 0.85137 1.04169 1.04174 1.22336 0.97235 0.88226 0.96798 1.77262 0.84737 1.21532 1.26229 1.48323 1.06611 1.02589 1.56360 1.22043 0.83851 0.94548 1.04228 1.21894 0.89848 0.84100 1.04435 1.98440 1.35401 1.65552 1.96694 1.19868 0.90252 0.95581 1.20284 1.17132 0.77427 0.84003 0.83870 1.90827 1.50889 1.67284 1.30788 1.47749 1.68279 1.11229 1.05630 1.21779 1.01531 0.96915 0.85901 1.21802 0.97453 0.78083 1.02958 1.22519 0.91680 0.87519 0.96054 0.93302 1.23779 0.99756 0.97876 0.98352 1.22115 0.89535 0.87049 0.97210 1.46119 1.21383 0.99531 1.65867 1.19028 0.98773 0.80607 1.36367 0.90339 1.24789 0.96048 0.97646 1.01936 1.69832 1.09025 1.29953 1.48042 0.86179 0.77851 0.84758 0.77350 1.21665 1.21770 1.20635 0.89479 0.89983 0.89587 0.89819 0.88312 0.89120 0.93155 0.90219 0.91631 0.89754 0.90751 0.93310 0.91044 0.95490 0.91734 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.28 36.00 0.37 -0.43 16 2 C 0.12 1.49 6.80 -82.01 -0.56 0.93 16 3 N -0.27 -3.28 12.49 33.90 0.42 -2.85 16 4 N -0.36 -3.71 3.98 -64.32 -0.26 -3.97 16 5 C 0.09 0.53 11.28 59.85 0.67 1.20 16 6 C 0.15 1.84 7.54 -16.43 -0.12 1.72 16 7 Cl 0.01 0.12 28.56 -51.86 -1.48 -1.36 16 8 C -0.24 -3.37 4.23 -105.02 -0.44 -3.81 16 9 C 0.59 9.73 7.01 -12.58 -0.09 9.64 16 10 O -0.52 -10.77 16.83 5.25 0.09 -10.69 16 11 N -0.60 -9.06 2.78 -182.89 -0.51 -9.57 16 12 C 0.08 0.94 9.98 59.85 0.60 1.54 16 13 C 0.12 2.20 5.22 -4.04 -0.02 2.18 16 14 C 0.13 2.73 4.53 -66.86 -0.30 2.43 16 15 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.16 -2.95 7.26 -25.79 -0.19 -3.14 16 17 C 0.17 3.95 7.37 -2.85 -0.02 3.92 16 18 N -0.60 -15.52 3.58 -169.73 -0.61 -16.13 16 19 C -0.22 -6.22 10.51 -15.06 -0.16 -6.37 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.67 11.58 55.49 0.64 -27.03 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.90 8.01 -51.93 -0.42 0.48 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.39 7.77 -51.93 -0.40 -0.01 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.88 6.54 -51.93 -0.34 0.54 16 35 H 0.06 0.69 6.61 -51.94 -0.34 0.34 16 36 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 37 H 0.07 1.51 7.67 -51.93 -0.40 1.11 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.22 6.90 -51.93 -0.36 0.87 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.66 7.49 -51.93 -0.39 1.27 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -35.09 368.47 -7.52 -42.61 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.99 Total: -3.54 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -0.36 Total: 9.50 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.31 Total: -59.55 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.48 Total: -1.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.09 -7.52 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085747523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.384 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds