Wall clock time and date at job start Sat Apr 11 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30413 * 125.98099 * 2 1 4 4 N 1.39918 * 108.96477 * 180.26104 * 3 2 1 5 5 C 1.46498 * 125.75581 * 179.67594 * 4 3 2 6 6 C 1.34355 * 108.50003 * 359.71607 * 4 3 2 7 7 Cl 1.73601 * 126.31723 * 180.02562 * 6 4 3 8 8 C 1.38276 * 107.36290 * 359.97438 * 6 4 3 9 9 C 1.47296 * 126.44040 * 179.97438 * 8 6 4 10 10 O 1.21626 * 119.99484 * 90.02515 * 9 8 6 11 11 N 1.34770 * 120.00076 * 269.75962 * 9 8 6 12 12 C 1.46503 * 120.00062 * 355.54862 * 11 9 8 13 13 C 1.46507 * 119.99943 * 175.55495 * 11 9 8 14 14 C 1.53001 * 109.46866 * 84.43404 * 13 11 9 15 15 H 1.08999 * 112.96532 * 294.05620 * 14 13 11 16 16 C 1.53946 * 113.77052 * 65.73771 * 14 13 11 17 17 C 1.53943 * 86.29060 * 137.90471 * 16 14 13 18 18 N 1.47580 * 113.76487 * 162.37780 * 14 13 11 19 19 C 1.36938 * 134.49209 * 41.07674 * 18 14 13 20 20 H 1.07999 * 120.00023 * 353.55123 * 19 18 14 21 21 C 1.38819 * 119.99680 * 173.56131 * 19 18 14 22 22 N 1.31619 * 120.00084 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47409 * 89.99568 * 23 21 19 25 25 H 1.48491 * 109.47348 * 209.99965 * 23 21 19 26 26 H 1.48506 * 109.47199 * 330.00027 * 23 21 19 27 27 H 1.08998 * 109.47375 * 270.21643 * 1 2 3 28 28 H 1.08999 * 109.47305 * 30.21834 * 1 2 3 29 29 H 1.09005 * 109.47250 * 150.21719 * 1 2 3 30 30 H 1.09000 * 109.47439 * 270.04577 * 5 4 3 31 31 H 1.09005 * 109.46602 * 30.04251 * 5 4 3 32 32 H 1.09001 * 109.47728 * 150.03964 * 5 4 3 33 33 H 1.09007 * 109.46502 * 90.00503 * 12 11 9 34 34 H 1.09000 * 109.47057 * 210.00098 * 12 11 9 35 35 H 1.08987 * 109.47130 * 330.00789 * 12 11 9 36 36 H 1.08996 * 109.47142 * 204.43416 * 13 11 9 37 37 H 1.08999 * 109.47276 * 324.43840 * 13 11 9 38 38 H 1.08996 * 113.74546 * 252.25350 * 16 14 13 39 39 H 1.09002 * 113.74031 * 23.45738 * 16 14 13 40 40 H 1.09002 * 113.76906 * 90.69482 * 17 16 14 41 41 H 1.09001 * 113.76938 * 221.98214 * 17 16 14 42 42 H 0.97000 * 119.99639 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6111 0.6459 -0.0060 5 6 4.7775 1.5322 -0.0147 6 6 3.6459 -0.6972 -0.0034 7 17 5.0708 -1.6888 -0.0081 8 6 2.3373 -1.1439 0.0048 9 6 1.8921 -2.5480 0.0097 10 8 1.7139 -3.1257 1.0650 11 7 1.6770 -3.1908 -1.1552 12 6 1.7912 -2.4664 -2.4235 13 6 1.3289 -4.6139 -1.1531 14 6 -0.1786 -4.7698 -0.9436 15 1 -0.5079 -4.4367 0.0406 16 6 -1.0268 -4.2150 -2.1024 17 6 -1.8918 -5.4782 -1.9417 18 7 -0.6983 -6.0968 -1.3272 19 6 -0.2526 -7.3826 -1.1748 20 1 0.7296 -7.5689 -0.7664 21 6 -1.0634 -8.4466 -1.5457 22 7 -2.2607 -8.2196 -2.0431 23 14 -0.4553 -10.2007 -1.3386 24 1 -0.8369 -10.7014 0.0064 25 1 -1.0683 -11.0634 -2.3802 26 1 1.0230 -10.2317 -1.4771 27 1 -0.3634 0.0039 1.0276 28 1 -0.3634 0.8880 -0.5172 29 1 -0.3634 -0.8920 -0.5105 30 1 5.0608 1.7499 -1.0445 31 1 4.5312 2.4617 0.4986 32 1 5.6082 1.0446 0.4954 33 1 2.8167 -2.5308 -2.7875 34 1 1.1170 -2.9091 -3.1567 35 1 1.5252 -1.4207 -2.2699 36 1 1.6110 -5.0583 -2.1076 37 1 1.8618 -5.1171 -0.3464 38 1 -1.5506 -3.2906 -1.8594 39 1 -0.4933 -4.1643 -3.0516 40 1 -2.7256 -5.3547 -1.2505 41 1 -2.1873 -5.9316 -2.8879 42 1 -2.8273 -8.9631 -2.3019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085747523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:30 Heat of formation + Delta-G solvation = 78.798825 kcal Electronic energy + Delta-G solvation = -25987.221769 eV Core-core repulsion = 22224.549830 eV Total energy + Delta-G solvation = -3762.671939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.64372 -40.73795 -39.33288 -38.15603 -36.39774 -35.15560 -34.19173 -31.83181 -30.62002 -29.80804 -29.73797 -27.62159 -26.64756 -25.28052 -24.46270 -22.84027 -21.55061 -20.94783 -20.23009 -18.80851 -18.32968 -17.64078 -17.23805 -16.96736 -16.70533 -16.55911 -15.90999 -15.75174 -15.11384 -14.83184 -14.50534 -14.33356 -14.14110 -13.89040 -13.84642 -13.66819 -13.57760 -13.38101 -13.26435 -13.22628 -12.90312 -12.86374 -12.77292 -12.53738 -12.34537 -12.23151 -11.91358 -11.78938 -11.51038 -11.28765 -11.02535 -10.82067 -10.35867 -9.77662 -9.64171 -8.85366 -7.88093 -5.20017 0.13760 0.27979 1.15866 1.44739 1.45851 1.46414 1.48489 1.56189 2.05757 2.51696 3.19450 3.33239 3.49271 3.71958 3.75032 3.94925 4.18079 4.23326 4.26235 4.32858 4.34729 4.35532 4.56740 4.60073 4.68887 4.70905 4.77358 4.82025 4.89499 4.92432 5.03670 5.05855 5.10181 5.25133 5.29907 5.49772 5.50403 5.60082 5.76681 5.97790 6.29648 6.40074 6.96443 7.13166 7.64700 8.61979 9.29874 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.003210 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.115418 B = 8721.113862 C = 9526.620956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.117 3.883 3 N -0.282 5.282 4 N -0.347 5.347 5 C 0.081 3.919 6 C 0.156 3.844 7 Cl 0.020 6.980 8 C -0.270 4.270 9 C 0.595 3.405 10 O -0.575 6.575 11 N -0.590 5.590 12 C 0.079 3.921 13 C 0.136 3.864 14 C 0.130 3.870 15 H 0.027 0.973 16 C -0.122 4.122 17 C 0.158 3.842 18 N -0.629 5.629 19 C -0.229 4.229 20 H 0.079 0.921 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.973 3.027 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.267 1.267 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.009 0.991 41 H 0.040 0.960 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.800 24.150 -1.578 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.105 5.105 4 N -0.128 5.128 5 C -0.058 4.058 6 C -0.002 4.002 7 Cl 0.049 6.951 8 C -0.287 4.287 9 C 0.382 3.618 10 O -0.454 6.454 11 N -0.321 5.321 12 C -0.063 4.063 13 C 0.012 3.988 14 C 0.023 3.977 15 H 0.045 0.955 16 C -0.160 4.160 17 C 0.033 3.967 18 N -0.356 5.356 19 C -0.358 4.358 20 H 0.097 0.903 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.801 3.199 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.191 1.191 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.027 0.973 41 H 0.059 0.941 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.024 24.804 -1.086 29.019 hybrid contribution 0.148 -2.441 0.569 2.511 sum 15.172 22.362 -0.517 27.028 Atomic orbital electron populations 1.20416 0.84029 1.04971 1.04408 1.22579 0.98078 0.87670 0.96585 1.77238 0.85416 1.21398 1.26489 1.48703 1.07192 1.02465 1.54479 1.22501 0.82643 0.94508 1.06139 1.21908 0.89676 0.84934 1.03694 1.98445 1.34656 1.65451 1.96596 1.19654 0.91521 0.94259 1.23246 1.17485 0.76270 0.84842 0.83196 1.90797 1.53174 1.68737 1.32675 1.47748 1.67418 1.09987 1.06989 1.22015 1.02948 0.97288 0.84056 1.21381 0.95064 0.80130 1.02210 1.22573 0.93781 0.85344 0.95953 0.95550 1.23531 0.97523 0.96716 0.98192 1.22103 0.89421 0.89722 0.95496 1.46530 1.22484 1.00260 1.66276 1.19379 0.98888 0.82200 1.35297 0.90276 1.25591 0.96413 1.01487 1.02391 1.70007 1.10170 1.30613 1.49446 0.85157 0.78023 0.79917 0.76753 1.21901 1.21845 1.19125 0.89553 0.87782 0.90094 0.87644 0.86870 0.87712 0.91521 0.89207 0.90169 0.88982 0.93332 0.89954 0.88735 0.97284 0.94134 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.28 71.23 0.73 -0.74 16 2 C 0.12 2.69 6.80 43.53 0.30 2.98 16 3 N -0.28 -6.07 12.49 -46.66 -0.58 -6.66 16 4 N -0.35 -6.33 3.98 -357.40 -1.42 -7.76 16 5 C 0.08 0.65 11.28 127.77 1.44 2.10 16 6 C 0.16 3.45 7.54 84.32 0.64 4.09 16 7 Cl 0.02 0.40 28.56 -2.72 -0.08 0.32 16 8 C -0.27 -7.12 4.23 -20.12 -0.09 -7.20 16 9 C 0.60 19.33 7.01 86.63 0.61 19.94 16 10 O -0.57 -24.26 16.83 -4.11 -0.07 -24.33 16 11 N -0.59 -17.20 2.78 -850.80 -2.37 -19.57 16 12 C 0.08 1.58 9.98 127.77 1.27 2.86 16 13 C 0.14 4.96 5.22 86.38 0.45 5.41 16 14 C 0.13 5.48 4.53 45.09 0.20 5.69 16 15 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 16 C -0.12 -4.31 7.26 31.25 0.23 -4.08 16 17 C 0.16 7.61 7.37 86.43 0.64 8.24 16 18 N -0.63 -32.91 3.58 -690.89 -2.47 -35.38 16 19 C -0.23 -13.15 10.51 84.04 0.88 -12.27 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 22 N -0.95 -58.66 11.58 21.65 0.25 -58.41 16 23 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.56 8.01 -2.38 -0.02 1.54 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.10 0.58 7.77 -2.39 -0.02 0.56 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.09 1.65 6.54 -2.39 -0.02 1.63 16 35 H 0.08 1.43 6.61 -2.39 -0.02 1.41 16 36 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 37 H 0.05 2.01 7.67 -2.39 -0.02 1.99 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.09 2.95 6.90 -2.39 -0.02 2.93 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.04 2.13 7.49 -2.39 -0.02 2.11 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -78.31 368.47 4.09 -74.22 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.03 Total: 4.99 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 7.77 Total: 23.63 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -6.60 Total: -127.77 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.07 Total: -24.33 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -78.31 4.09 -74.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085747523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.020 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds