Wall clock time and date at job start Sat Apr 11 2020 01:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35461 * 126.43557 * 2 1 4 4 Cl 1.73603 * 127.23823 * 359.97114 * 3 2 1 5 5 C 1.41550 * 105.52148 * 180.13696 * 3 2 1 6 6 C 1.47664 * 126.45946 * 179.83890 * 5 3 2 7 7 O 1.21583 * 120.00027 * 5.66843 * 6 5 3 8 8 N 1.34778 * 120.00261 * 185.66833 * 6 5 3 9 9 C 1.46496 * 119.99513 * 355.85174 * 8 6 5 10 10 C 1.46498 * 120.00178 * 175.86003 * 8 6 5 11 11 C 1.52998 * 109.47132 * 95.69545 * 10 8 6 12 12 H 1.08997 * 113.04311 * 65.66951 * 11 10 8 13 13 C 1.53953 * 113.76849 * 293.91756 * 11 10 8 14 14 C 1.53954 * 86.28842 * 222.09493 * 13 11 10 15 15 N 1.47581 * 86.23861 * 23.55085 * 14 13 11 16 16 C 1.36940 * 134.48736 * 155.42863 * 15 14 13 17 17 H 1.07999 * 119.99517 * 185.21100 * 16 15 14 18 18 C 1.38807 * 120.00242 * 5.21153 * 16 15 14 19 19 N 1.31617 * 120.00042 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47635 * 59.99509 * 20 18 16 22 22 H 1.48497 * 109.47265 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46812 * 299.99450 * 20 18 16 24 24 N 1.31817 * 107.07532 * 359.57776 * 5 3 2 25 25 N 1.28469 * 110.14064 * 0.25867 * 24 5 3 26 26 C 1.46498 * 124.93605 * 179.97438 * 25 24 5 27 27 H 1.08997 * 109.47346 * 270.33344 * 1 2 3 28 28 H 1.09002 * 109.46635 * 30.33097 * 1 2 3 29 29 H 1.08995 * 109.46979 * 150.32716 * 1 2 3 30 30 H 1.08997 * 109.47984 * 275.67575 * 9 8 6 31 31 H 1.09005 * 109.47330 * 35.67414 * 9 8 6 32 32 H 1.08999 * 109.46968 * 155.67333 * 9 8 6 33 33 H 1.08996 * 109.47456 * 335.69251 * 10 8 6 34 34 H 1.09002 * 109.46817 * 215.69072 * 10 8 6 35 35 H 1.08998 * 113.73845 * 107.75074 * 13 11 10 36 36 H 1.08998 * 113.83786 * 336.45367 * 13 11 10 37 37 H 1.08994 * 113.76405 * 137.90766 * 14 13 11 38 38 H 1.09002 * 113.76626 * 269.19402 * 14 13 11 39 39 H 0.97000 * 120.00166 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47082 * 89.98053 * 26 25 24 41 41 H 1.08999 * 109.47317 * 209.98044 * 26 25 24 42 42 H 1.09001 * 109.47632 * 329.98353 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3116 1.0898 0.0000 4 17 1.8236 2.7558 -0.0007 5 6 3.6338 0.5845 -0.0033 6 6 4.8774 1.3807 -0.0079 7 8 4.8248 2.5910 0.0948 8 7 6.0709 0.7657 -0.1259 9 6 6.1410 -0.6972 -0.1581 10 6 7.2980 1.5602 -0.2218 11 6 7.9306 1.6909 1.1652 12 1 8.2822 0.7399 1.5652 13 6 7.0839 2.5069 2.1589 14 6 8.4084 3.1558 2.6002 15 7 8.9230 2.7814 1.2687 16 6 9.9187 3.2552 0.4567 17 1 10.0462 2.8478 -0.5353 18 6 10.7642 4.2590 0.9087 19 7 10.6086 4.7558 2.1175 20 14 12.1221 4.9057 -0.1992 21 1 11.5252 5.4696 -1.4365 22 1 12.8787 5.9668 0.5128 23 1 13.0417 3.7953 -0.5548 24 7 3.5456 -0.7307 0.0043 25 7 2.3126 -1.0913 0.0065 26 6 1.8445 -2.4795 0.0140 27 1 -0.3634 0.0060 1.0276 28 1 -0.3633 0.8870 -0.5190 29 1 -0.3633 -0.8929 -0.5087 30 1 6.1487 -1.0833 0.8611 31 1 5.2742 -1.0909 -0.6892 32 1 7.0521 -1.0061 -0.6705 33 1 7.0600 2.5514 -0.6074 34 1 7.9986 1.0667 -0.8955 35 1 6.6120 1.9022 2.9333 36 1 6.3925 3.2015 1.6819 37 1 8.3392 4.2321 2.7578 38 1 8.8994 2.6361 3.4230 39 1 11.1992 5.4576 2.4332 40 1 1.7289 -2.8184 1.0435 41 1 0.8848 -2.5421 -0.4991 42 1 2.5715 -3.1109 -0.4969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085849312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:33 Heat of formation + Delta-G solvation = 89.793303 kcal Electronic energy + Delta-G solvation = -25854.927125 eV Core-core repulsion = 22092.731941 eV Total energy + Delta-G solvation = -3762.195183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.80694 -40.87570 -39.30087 -37.51278 -36.48004 -34.61197 -34.16098 -33.46278 -30.34810 -29.82892 -28.50753 -27.81651 -27.28172 -25.30481 -24.68580 -23.11524 -21.89414 -20.83705 -20.10235 -18.66485 -18.12096 -17.65757 -17.53727 -17.14797 -16.81123 -16.38068 -15.80943 -15.75373 -15.20015 -15.00939 -14.53639 -14.21300 -14.07312 -14.02522 -13.85356 -13.64235 -13.58303 -13.34484 -13.28960 -12.98034 -12.90625 -12.77229 -12.57223 -12.50022 -12.30097 -12.06195 -11.81483 -11.61627 -11.57996 -11.25330 -10.93829 -10.82847 -10.16606 -9.78630 -9.57114 -8.87507 -7.87461 -5.20730 0.40766 0.80144 0.98390 1.44633 1.49803 1.55140 1.66293 2.02990 2.26474 2.51034 3.22072 3.33973 3.43616 3.56289 3.75512 3.91396 4.08100 4.23420 4.33121 4.37265 4.41103 4.42487 4.47776 4.67248 4.69573 4.70250 4.76630 4.83784 4.85955 4.88548 5.01179 5.03440 5.08482 5.15004 5.23657 5.51351 5.55452 5.72583 5.77213 5.94953 6.37298 6.69850 6.93139 7.16880 7.63367 8.60773 9.30735 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.003046 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.337393 B = 9189.577244 C = 9753.504806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.043 3.957 3 C -0.138 4.138 4 Cl -0.025 7.025 5 C -0.021 4.021 6 C 0.586 3.414 7 O -0.551 6.551 8 N -0.595 5.595 9 C 0.076 3.924 10 C 0.133 3.867 11 C 0.136 3.864 12 H 0.059 0.941 13 C -0.134 4.134 14 C 0.162 3.838 15 N -0.627 5.627 16 C -0.230 4.230 17 H 0.088 0.912 18 C -0.073 4.073 19 N -0.958 5.958 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.273 1.273 24 N -0.244 5.244 25 N -0.271 5.271 26 C 0.072 3.928 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.020 0.980 39 H 0.247 0.753 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.564 -20.858 -5.777 33.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.175 4.175 4 Cl 0.003 6.997 5 C -0.180 4.180 6 C 0.372 3.628 7 O -0.426 6.426 8 N -0.327 5.327 9 C -0.066 4.066 10 C 0.009 3.991 11 C 0.029 3.971 12 H 0.076 0.924 13 C -0.172 4.172 14 C 0.036 3.964 15 N -0.354 5.354 16 C -0.358 4.358 17 H 0.106 0.894 18 C -0.265 4.265 19 N -0.607 5.607 20 Si 0.808 3.192 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.198 1.198 24 N -0.081 5.081 25 N -0.060 5.060 26 C -0.065 4.065 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.124 0.876 41 H 0.148 0.852 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.743 -21.016 -5.814 32.981 hybrid contribution 0.909 1.726 -0.059 1.952 sum -23.835 -19.290 -5.872 31.220 Atomic orbital electron populations 1.20618 0.82633 1.05858 1.05172 1.21633 0.97013 0.84709 1.04956 1.20781 0.92427 0.88056 1.16263 1.98346 1.90752 1.13277 1.97290 1.21572 0.93648 0.90412 1.12389 1.17276 0.82373 0.86263 0.76847 1.90827 1.86612 1.14584 1.50622 1.47644 1.04908 1.08731 1.71420 1.22274 1.04565 0.76794 1.02924 1.21456 0.84591 0.95905 0.97166 1.22681 0.87909 0.91932 0.94531 0.92408 1.23532 0.96162 0.99065 0.98453 1.22009 0.89506 0.97399 0.87455 1.46315 1.37616 1.34240 1.17196 1.19411 1.05558 1.15166 0.95656 0.89388 1.25698 1.02064 1.00492 0.98251 1.70043 1.41214 1.30638 1.18844 0.85125 0.78820 0.77608 0.77627 1.20355 1.22231 1.19827 1.73746 1.02683 1.12191 1.19456 1.46031 1.01952 1.09098 1.48913 1.22784 1.03562 0.73532 1.06663 0.88335 0.89546 0.87155 0.92260 0.88070 0.89859 0.92191 0.89562 0.91649 0.91068 0.95143 0.96242 0.94415 0.87574 0.85196 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 9.99 71.24 0.71 0.14 16 2 C 0.04 0.71 6.94 41.33 0.29 1.00 16 3 C -0.14 -3.61 6.79 22.44 0.15 -3.45 16 4 Cl -0.03 -0.71 27.95 -2.72 -0.08 -0.79 16 5 C -0.02 -0.63 6.83 42.45 0.29 -0.34 16 6 C 0.59 21.21 7.33 86.73 0.64 21.85 16 7 O -0.55 -24.18 13.65 -3.98 -0.05 -24.23 16 8 N -0.59 -19.55 2.80 -850.41 -2.38 -21.93 16 9 C 0.08 1.80 9.71 127.77 1.24 3.04 16 10 C 0.13 5.18 5.41 86.38 0.47 5.64 16 11 C 0.14 6.00 4.58 45.05 0.21 6.20 16 12 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.13 -6.09 7.24 31.26 0.23 -5.86 16 14 C 0.16 8.74 7.38 86.48 0.64 9.38 16 15 N -0.63 -34.70 3.58 -690.87 -2.48 -37.18 16 16 C -0.23 -13.53 10.52 84.03 0.88 -12.64 16 17 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 18 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 19 N -0.96 -61.66 11.52 21.65 0.25 -61.41 16 20 Si 0.98 48.01 29.55 68.60 2.03 50.03 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 N -0.24 -5.38 8.46 -48.17 -0.41 -5.78 16 25 N -0.27 -3.94 3.72 -355.38 -1.32 -5.26 16 26 C 0.07 0.15 11.12 127.77 1.42 1.58 16 27 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 0.71 8.04 -2.39 -0.02 0.69 16 29 H 0.11 -0.03 7.02 -2.39 -0.02 -0.04 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 2.16 5.27 -2.38 -0.01 2.15 16 32 H 0.08 1.68 7.89 -2.39 -0.02 1.66 16 33 H 0.06 2.76 7.31 -2.39 -0.02 2.74 16 34 H 0.09 3.03 7.95 -2.39 -0.02 3.01 16 35 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.07 3.53 6.46 -2.39 -0.02 3.52 16 37 H 0.03 1.83 7.40 -2.39 -0.02 1.81 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.13 -0.55 6.98 -2.39 -0.02 -0.56 16 42 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -84.16 359.37 4.23 -79.94 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 1.04 Total: 4.00 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 7.63 Total: 22.62 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -6.34 Total: -131.57 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -84.16 4.23 -79.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085849312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.730 kcal (2) G-P(sol) polarization free energy of solvation -84.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds