Wall clock time and date at job start Sat Apr 11 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35465 * 126.43466 * 2 1 4 4 Cl 1.73599 * 127.23901 * 359.97438 * 3 2 1 5 5 C 1.41546 * 105.52080 * 180.13782 * 3 2 1 6 6 C 1.47668 * 126.45756 * 179.84221 * 5 3 2 7 7 O 1.21578 * 120.00469 * 5.42075 * 6 5 3 8 8 N 1.34784 * 119.99690 * 185.42143 * 6 5 3 9 9 C 1.46499 * 119.99924 * 4.64399 * 8 6 5 10 10 C 1.46502 * 119.99923 * 184.64531 * 8 6 5 11 11 C 1.53002 * 109.47198 * 273.41679 * 10 8 6 12 12 H 1.09003 * 112.73482 * 316.40419 * 11 10 8 13 13 C 1.53496 * 113.51844 * 87.19813 * 11 10 8 14 14 C 1.53244 * 83.42907 * 140.68965 * 13 11 10 15 15 N 1.47063 * 113.46740 * 185.66010 * 11 10 8 16 16 C 1.36939 * 136.05821 * 38.00609 * 15 11 10 17 17 H 1.08000 * 119.99884 * 354.58104 * 16 15 11 18 18 C 1.38813 * 120.00109 * 174.29894 * 16 15 11 19 19 N 1.31618 * 119.99432 * 0.27850 * 18 16 15 20 20 Si 1.86794 * 119.99905 * 180.27589 * 18 16 15 21 21 H 1.48498 * 109.47218 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46912 * 120.00558 * 20 18 16 23 23 H 1.48506 * 109.46978 * 240.00042 * 20 18 16 24 24 N 1.31827 * 107.07991 * 359.57963 * 5 3 2 25 25 N 1.28468 * 110.13108 * 0.26364 * 24 5 3 26 26 C 1.46504 * 124.93062 * 180.02562 * 25 24 5 27 27 H 1.09000 * 109.47394 * 270.32721 * 1 2 3 28 28 H 1.08998 * 109.46794 * 30.32661 * 1 2 3 29 29 H 1.08993 * 109.47060 * 150.32441 * 1 2 3 30 30 H 1.08997 * 109.46470 * 174.82669 * 9 8 6 31 31 H 1.09001 * 109.46914 * 294.82013 * 9 8 6 32 32 H 1.08998 * 109.47159 * 54.82719 * 9 8 6 33 33 H 1.09002 * 109.47056 * 153.41370 * 10 8 6 34 34 H 1.09001 * 109.47157 * 33.41383 * 10 8 6 35 35 H 1.09003 * 114.20421 * 254.44000 * 13 11 10 36 36 H 1.08990 * 114.21149 * 27.07516 * 13 11 10 37 37 H 1.08993 * 113.38450 * 219.29027 * 14 13 11 38 38 H 1.08999 * 113.47000 * 88.92285 * 14 13 11 39 39 H 0.97006 * 119.99641 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.47135 * 89.97227 * 26 25 24 41 41 H 1.09000 * 109.47286 * 209.97762 * 26 25 24 42 42 H 1.09004 * 109.47071 * 329.97525 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8235 2.7559 -0.0006 5 6 3.6337 0.5846 -0.0033 6 6 4.8773 1.3808 -0.0078 7 8 4.8245 2.5915 0.0904 8 7 6.0711 0.7653 -0.1209 9 6 6.1312 -0.6817 -0.3413 10 6 7.3086 1.5435 -0.0233 11 6 7.6699 2.1020 -1.4012 12 1 7.5474 1.3686 -2.1983 13 6 7.0092 3.4533 -1.7068 14 6 8.3661 3.7737 -2.3428 15 7 8.9697 2.7892 -1.4321 16 6 10.1993 2.5993 -0.8600 17 1 10.3412 1.8129 -0.1335 18 6 11.2647 3.4139 -1.2181 19 7 11.0916 4.3723 -2.1035 20 14 12.9438 3.1499 -0.4434 21 1 12.8747 2.0167 0.5137 22 1 13.9355 2.8412 -1.5047 23 1 13.3561 4.3819 0.2761 24 7 3.5456 -0.7307 0.0043 25 7 2.3126 -1.0912 0.0063 26 6 1.8445 -2.4795 0.0148 27 1 -0.3634 0.0059 1.0276 28 1 -0.3633 0.8870 -0.5189 29 1 -0.3633 -0.8928 -0.5088 30 1 7.1671 -0.9826 -0.4978 31 1 5.7304 -1.1990 0.5304 32 1 5.5410 -0.9401 -1.2205 33 1 8.1147 0.9011 0.3312 34 1 7.1657 2.3669 0.6764 35 1 6.1832 3.3967 -2.4159 36 1 6.7784 4.0481 -0.8231 37 1 8.6991 4.7953 -2.1600 38 1 8.4310 3.4902 -3.3932 39 1 11.8360 4.9418 -2.3536 40 1 1.7287 -2.8176 1.0445 41 1 0.8850 -2.5425 -0.4985 42 1 2.5716 -3.1112 -0.4955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085849313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:36 Heat of formation + Delta-G solvation = 114.112189 kcal Electronic energy + Delta-G solvation = -25776.559831 eV Core-core repulsion = 22015.419193 eV Total energy + Delta-G solvation = -3761.140637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.95597 -39.43577 -37.68817 -36.54513 -35.10003 -33.81524 -32.78659 -32.08666 -28.93209 -27.77579 -27.74621 -27.06406 -26.06621 -23.41804 -23.13098 -21.67763 -21.02287 -19.03402 -18.86683 -17.27334 -16.86869 -16.69320 -16.34322 -15.70750 -15.17277 -14.99102 -14.57327 -13.97385 -13.86371 -13.77514 -13.54970 -13.45994 -13.18364 -13.00990 -12.76747 -12.62236 -12.54849 -12.13627 -11.90083 -11.84206 -11.36887 -11.25616 -10.97375 -10.76889 -10.68300 -10.61880 -10.27732 -9.79797 -9.64568 -9.60425 -9.36533 -9.26720 -8.85894 -8.69435 -8.11682 -6.74885 -5.67407 -2.98812 1.38428 1.69537 1.75178 2.51952 3.24518 3.44352 3.48878 3.51922 3.52209 4.06437 4.19030 4.47747 4.53952 4.57345 4.63578 4.87137 5.05571 5.06629 5.31514 5.34373 5.40990 5.47104 5.55432 5.68874 5.71713 5.81993 5.98714 6.06359 6.15047 6.20073 6.36657 6.55806 6.73380 6.82067 6.96949 6.98437 7.38594 7.52317 7.62870 7.71281 7.72048 8.08537 8.46520 9.13162 9.80150 10.77938 11.50907 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.002991 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.742283 B = 9358.138832 C =10175.581421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.021 3.979 3 C -0.104 4.104 4 Cl -0.008 7.008 5 C 0.011 3.989 6 C 0.591 3.409 7 O -0.506 6.506 8 N -0.599 5.599 9 C 0.092 3.908 10 C 0.119 3.881 11 C 0.130 3.870 12 H 0.039 0.961 13 C -0.150 4.150 14 C 0.155 3.845 15 N -0.602 5.602 16 C -0.215 4.215 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 N -0.245 5.245 25 N -0.284 5.284 26 C 0.088 3.912 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.252 0.748 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.898 -15.246 4.253 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.141 4.141 4 Cl 0.021 6.979 5 C -0.150 4.150 6 C 0.376 3.624 7 O -0.378 6.378 8 N -0.332 5.332 9 C -0.052 4.052 10 C -0.003 4.003 11 C 0.022 3.978 12 H 0.057 0.943 13 C -0.189 4.189 14 C 0.029 3.971 15 N -0.328 5.328 16 C -0.343 4.343 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.565 5.565 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 N -0.080 5.080 25 N -0.073 5.073 26 C -0.052 4.052 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.954 -15.481 4.378 28.856 hybrid contribution 0.546 0.330 0.168 0.660 sum -23.409 -15.151 4.546 28.252 Atomic orbital electron populations 1.20387 0.85974 1.04201 1.03665 1.21078 0.95331 0.85871 1.08137 1.20528 0.92104 0.87790 1.13677 1.98362 1.90777 1.11683 1.97080 1.21995 0.94467 0.89339 1.09198 1.16785 0.81293 0.86368 0.77973 1.90855 1.85778 1.12258 1.48904 1.47727 1.05898 1.08763 1.70830 1.21792 1.02182 0.79822 1.01403 1.21960 0.82993 0.95614 0.99777 1.22455 0.87377 0.94300 0.93705 0.94331 1.23550 0.96659 0.97719 1.00945 1.21933 0.87214 0.95719 0.92198 1.45640 1.06381 1.27930 1.52825 1.18931 0.84118 1.14178 1.17061 0.90241 1.24811 0.97740 0.98818 0.99160 1.69874 1.30498 1.21163 1.34939 0.86082 0.84332 0.77367 0.78204 1.20488 1.21861 1.21761 1.73901 1.01079 1.13864 1.19199 1.45364 1.02911 1.07262 1.51766 1.22195 1.01775 0.76597 1.04627 0.89915 0.89267 0.90760 0.90888 0.91923 0.92220 0.90622 0.89738 0.93269 0.89881 0.91870 0.95960 0.93797 0.89497 0.88572 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 9.99 36.00 0.36 -0.08 16 2 C 0.02 0.20 6.94 -81.90 -0.57 -0.37 16 3 C -0.10 -1.38 6.79 -39.31 -0.27 -1.64 16 4 Cl -0.01 -0.10 27.95 -51.86 -1.45 -1.55 16 5 C 0.01 0.17 6.84 -82.76 -0.57 -0.40 16 6 C 0.59 10.41 7.65 -12.41 -0.09 10.32 16 7 O -0.51 -10.22 14.12 5.30 0.07 -10.15 16 8 N -0.60 -10.02 2.88 -182.76 -0.53 -10.54 16 9 C 0.09 1.20 9.07 59.85 0.54 1.74 16 10 C 0.12 2.32 5.31 -4.04 -0.02 2.29 16 11 C 0.13 2.88 4.30 -72.39 -0.31 2.56 16 12 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 13 C -0.15 -3.34 6.85 -26.35 -0.18 -3.52 16 14 C 0.15 3.99 7.25 -8.63 -0.06 3.93 16 15 N -0.60 -16.15 3.65 -177.16 -0.65 -16.79 16 16 C -0.22 -6.16 10.55 -15.06 -0.16 -6.32 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 19 N -0.92 -28.32 11.66 55.49 0.65 -27.67 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 N -0.25 -3.01 8.70 33.42 0.29 -2.72 16 25 N -0.28 -2.58 3.72 -63.68 -0.24 -2.82 16 26 C 0.09 0.32 11.12 59.85 0.67 0.99 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 29 H 0.07 0.21 7.02 -51.93 -0.36 -0.16 16 30 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 31 H 0.06 0.75 7.22 -51.93 -0.38 0.38 16 32 H 0.06 0.76 7.39 -51.93 -0.38 0.37 16 33 H 0.08 1.43 7.89 -51.93 -0.41 1.02 16 34 H 0.08 1.78 7.32 -51.93 -0.38 1.40 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.92 7.65 -51.93 -0.40 1.52 16 37 H 0.06 1.77 7.40 -51.93 -0.38 1.39 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.10 6.98 -51.93 -0.36 -0.26 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -36.01 361.41 -8.14 -44.15 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.96 Total: -4.13 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.76 Total: 9.15 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.47 Total: -60.54 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.45 Total: -1.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.01 -8.14 -44.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085849313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.267 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds