Wall clock time and date at job start Sat Apr 11 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84970 * 23.81002 * 10 9 7 12 12 C 1.53782 * 113.61423 * 155.00115 * 10 9 7 13 13 C 1.53775 * 87.08063 * 139.98212 * 12 10 9 14 14 H 1.08999 * 113.61323 * 89.20640 * 13 12 10 15 15 C 1.53007 * 113.61146 * 220.01802 * 13 12 10 16 16 N 1.46502 * 109.46724 * 184.99747 * 15 13 12 17 17 C 1.34782 * 119.99798 * 179.97438 * 16 15 13 18 18 O 1.21475 * 119.99758 * 0.02562 * 17 16 15 19 19 C 1.48449 * 119.99870 * 180.02562 * 17 16 15 20 20 C 1.39536 * 120.54832 * 179.72659 * 19 17 16 21 21 C 1.38759 * 118.26531 * 179.76253 * 20 19 17 22 22 C 1.50698 * 120.43038 * 180.23532 * 21 20 19 23 23 F 1.39907 * 109.47230 * 210.28403 * 22 21 20 24 24 F 1.39908 * 109.46825 * 330.27922 * 22 21 20 25 25 N 1.32207 * 119.14472 * 0.51189 * 21 20 19 26 26 C 1.31882 * 121.03883 * 359.74388 * 25 21 20 27 27 N 1.31583 * 121.91122 * 359.97438 * 26 25 21 28 28 C 1.53777 * 87.08305 * 334.56593 * 13 12 10 29 29 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.61570 * 254.53515 * 12 10 9 32 32 H 1.09005 * 113.61104 * 25.34596 * 12 10 9 33 33 H 1.08998 * 109.47329 * 304.99913 * 15 13 12 34 34 H 1.09004 * 109.47076 * 65.00398 * 15 13 12 35 35 H 0.96996 * 120.00386 * 0.02562 * 16 15 13 36 36 H 1.08004 * 120.87222 * 359.97438 * 20 19 17 37 37 H 1.08996 * 109.47241 * 90.27929 * 22 21 20 38 38 H 1.07998 * 119.04408 * 179.97438 * 26 25 21 39 39 H 1.09001 * 113.61887 * 270.88346 * 28 13 12 40 40 H 1.09001 * 113.61059 * 139.97697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0658 -3.5640 0.4031 12 6 1.2606 -4.8290 0.5939 13 6 1.8476 -5.6973 -0.5314 14 1 2.7976 -6.1645 -0.2720 15 6 0.8439 -6.6847 -1.1305 16 7 1.5244 -7.5422 -2.1042 17 6 0.8338 -8.4944 -2.7622 18 8 -0.3529 -8.6412 -2.5483 19 6 1.5235 -9.3636 -3.7483 20 6 0.8209 -10.3567 -4.4319 21 6 1.5114 -11.1387 -5.3468 22 6 0.7996 -12.2216 -6.1160 23 9 1.6963 -13.2566 -6.4024 24 9 -0.2584 -12.7203 -5.3484 25 7 2.8031 -10.9252 -5.5310 26 6 3.4381 -9.9811 -4.8641 27 7 2.8230 -9.2123 -3.9913 28 6 1.9980 -4.4016 -1.3457 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 1.5928 -5.1218 1.5898 32 1 0.1802 -4.6997 0.5291 33 1 0.4218 -7.3005 -0.3364 34 1 0.0449 -6.1342 -1.6272 35 1 2.4721 -7.4252 -2.2747 36 1 -0.2335 -10.5104 -4.2560 37 1 0.4104 -11.8100 -7.0472 38 1 4.4937 -9.8348 -5.0396 39 1 1.1193 -4.1561 -1.9421 40 1 2.9257 -4.3493 -1.9156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086121241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:46 Heat of formation + Delta-G solvation = -52.059313 kcal Electronic energy + Delta-G solvation = -25986.728034 eV Core-core repulsion = 21666.584980 eV Total energy + Delta-G solvation = -4320.143054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.64436 -47.64606 -41.89356 -39.86386 -38.60092 -35.22709 -34.75070 -33.62010 -33.12852 -30.18403 -28.45055 -27.70993 -25.33917 -25.18906 -24.26256 -23.56603 -21.44612 -21.20337 -19.46791 -18.80291 -18.75687 -18.21666 -17.52464 -17.29672 -16.64159 -16.19117 -16.05321 -16.02878 -15.59207 -15.19928 -14.93942 -14.72920 -14.43490 -13.96130 -13.91978 -13.81550 -13.53940 -13.48268 -13.31204 -12.28640 -12.08072 -11.98633 -11.72756 -11.65876 -11.44000 -11.08635 -10.86240 -10.75013 -10.47485 -10.39861 -10.31037 -10.04701 -10.00397 -9.91196 -9.30001 -9.14396 -8.90574 -7.07031 -6.14277 -3.14398 -0.21672 0.02138 2.22412 2.42625 2.60559 3.11714 3.25755 3.37914 3.49420 3.51376 3.54193 3.68219 3.93476 4.17900 4.22917 4.31427 4.63024 4.68920 4.82031 4.83205 4.88337 5.08455 5.35633 5.42529 5.44327 5.65382 5.66281 5.81252 5.86778 5.96717 6.06604 6.15918 6.20421 6.26985 6.47388 6.67016 6.97440 7.05081 7.24702 7.74886 7.77931 8.71613 9.18400 10.04764 10.19623 11.33908 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.001852 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.977400 B =15115.835228 C =15417.558493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.046 4.046 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.336 4.336 8 H 0.066 0.934 9 N -0.724 5.724 10 C 0.172 3.828 11 H 0.077 0.923 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.091 0.909 15 C 0.129 3.871 16 N -0.696 5.696 17 C 0.564 3.436 18 O -0.521 6.521 19 C 0.144 3.856 20 C -0.140 4.140 21 C 0.099 3.901 22 C 0.330 3.670 23 F -0.181 7.181 24 F -0.186 7.186 25 N -0.479 5.479 26 C 0.304 3.696 27 N -0.482 5.482 28 C -0.161 4.161 29 H 0.255 0.745 30 H 0.368 0.632 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.413 0.587 36 H 0.171 0.829 37 H 0.141 0.859 38 H 0.214 0.786 39 H 0.077 0.923 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -25.899 -11.515 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.243 4.243 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.084 0.916 9 N -0.363 5.363 10 C 0.059 3.941 11 H 0.095 0.905 12 C -0.183 4.183 13 C -0.146 4.146 14 H 0.110 0.890 15 C 0.006 3.994 16 N -0.346 5.346 17 C 0.347 3.653 18 O -0.396 6.396 19 C -0.005 4.005 20 C -0.163 4.163 21 C -0.050 4.050 22 C 0.275 3.725 23 F -0.162 7.162 24 F -0.167 7.167 25 N -0.193 5.193 26 C 0.016 3.984 27 N -0.198 5.198 28 C -0.202 4.202 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.249 0.751 36 H 0.189 0.811 37 H 0.158 0.842 38 H 0.230 0.770 39 H 0.095 0.905 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.074 -24.117 -11.440 27.171 hybrid contribution -0.362 -1.948 0.027 1.981 sum 4.713 -26.065 -11.413 28.842 Atomic orbital electron populations 1.70852 1.06063 1.28498 1.53381 1.25811 0.97065 1.01130 1.00311 0.83193 0.73880 0.75287 0.76259 1.22275 1.21372 1.22131 1.20129 0.92094 0.85882 1.48604 0.91620 1.42421 1.04776 1.00893 1.88256 1.21453 0.95341 0.84521 0.92736 0.90471 1.23466 1.00923 0.97076 0.96846 1.22646 0.98468 0.94313 0.99184 0.89037 1.21608 0.95495 0.91594 0.90668 1.45916 1.14133 1.33533 1.41047 1.17681 0.86210 0.80708 0.80737 1.90837 1.14168 1.69813 1.64819 1.21780 0.90032 0.93818 0.94845 1.22698 1.04253 0.94567 0.94801 1.22235 0.91572 0.96350 0.94860 1.20067 0.77716 0.81516 0.93160 1.93070 1.68636 1.60476 1.93987 1.93072 1.56888 1.88606 1.78176 1.68037 1.08190 1.18561 1.24541 1.25140 1.01069 0.85473 0.86745 1.68396 1.09143 1.26065 1.16225 1.23949 1.01476 0.94820 0.99975 0.93329 0.79819 0.91797 0.90213 0.91099 0.90687 0.75100 0.81116 0.84225 0.76999 0.90478 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.03 13.70 55.49 0.76 -28.27 16 2 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 3 Si 1.08 25.76 29.92 -169.99 -5.09 20.67 16 4 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.34 -9.34 9.97 -15.06 -0.15 -9.49 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.79 5.40 -52.64 -0.28 -18.07 16 10 C 0.17 3.26 4.48 -67.12 -0.30 2.95 16 11 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 12 C -0.14 -2.18 7.39 -25.92 -0.19 -2.37 16 13 C -0.13 -1.60 3.75 -89.81 -0.34 -1.94 16 14 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.57 5.51 -4.04 -0.02 1.54 16 16 N -0.70 -7.66 5.55 -61.05 -0.34 -8.00 16 17 C 0.56 6.76 7.83 -12.05 -0.09 6.67 16 18 O -0.52 -7.69 16.43 5.39 0.09 -7.60 16 19 C 0.14 1.44 6.79 -82.64 -0.56 0.88 16 20 C -0.14 -1.21 9.07 -38.91 -0.35 -1.56 16 21 C 0.10 0.77 6.61 -82.24 -0.54 0.23 16 22 C 0.33 1.94 5.74 36.00 0.21 2.15 16 23 F -0.18 -1.45 17.09 2.25 0.04 -1.41 16 24 F -0.19 -1.34 16.55 2.25 0.04 -1.30 16 25 N -0.48 -3.94 10.08 -10.81 -0.11 -4.05 16 26 C 0.30 2.19 12.28 -92.26 -1.13 1.06 16 27 N -0.48 -4.26 9.70 -11.14 -0.11 -4.37 16 28 C -0.16 -2.58 7.43 -25.92 -0.19 -2.77 16 29 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 30 H 0.37 9.35 6.76 -40.82 -0.28 9.07 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.25 8.08 -51.93 -0.42 0.84 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 35 H 0.41 3.95 7.86 -40.82 -0.32 3.63 16 36 H 0.17 1.35 7.37 -52.48 -0.39 0.97 16 37 H 0.14 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.21 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -34.05 355.36 -8.07 -42.12 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.66 Total: 8.98 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.77 Total: -4.06 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.08 Total: -62.76 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.09 Total: 20.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.05 -8.07 -42.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086121241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.935 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds