Wall clock time and date at job start Sat Apr 11 2020 01:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84970 * 23.81002 * 10 9 7 12 12 C 1.53782 * 113.61423 * 155.00115 * 10 9 7 13 13 C 1.53775 * 87.08063 * 139.98212 * 12 10 9 14 14 H 1.08999 * 113.61323 * 89.20640 * 13 12 10 15 15 C 1.53007 * 113.61146 * 220.01802 * 13 12 10 16 16 N 1.46502 * 109.46724 * 184.99747 * 15 13 12 17 17 C 1.34782 * 119.99798 * 179.97438 * 16 15 13 18 18 O 1.21475 * 119.99758 * 0.02562 * 17 16 15 19 19 C 1.48449 * 119.99870 * 180.02562 * 17 16 15 20 20 C 1.39536 * 120.54832 * 179.72659 * 19 17 16 21 21 C 1.38759 * 118.26531 * 179.76253 * 20 19 17 22 22 C 1.50698 * 120.43038 * 180.23532 * 21 20 19 23 23 F 1.39907 * 109.47230 * 210.28403 * 22 21 20 24 24 F 1.39908 * 109.46825 * 330.27922 * 22 21 20 25 25 N 1.32207 * 119.14472 * 0.51189 * 21 20 19 26 26 C 1.31882 * 121.03883 * 359.74388 * 25 21 20 27 27 N 1.31583 * 121.91122 * 359.97438 * 26 25 21 28 28 C 1.53777 * 87.08305 * 334.56593 * 13 12 10 29 29 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.61570 * 254.53515 * 12 10 9 32 32 H 1.09005 * 113.61104 * 25.34596 * 12 10 9 33 33 H 1.08998 * 109.47329 * 304.99913 * 15 13 12 34 34 H 1.09004 * 109.47076 * 65.00398 * 15 13 12 35 35 H 0.96996 * 120.00386 * 0.02562 * 16 15 13 36 36 H 1.08004 * 120.87222 * 359.97438 * 20 19 17 37 37 H 1.08996 * 109.47241 * 90.27929 * 22 21 20 38 38 H 1.07998 * 119.04408 * 179.97438 * 26 25 21 39 39 H 1.09001 * 113.61887 * 270.88346 * 28 13 12 40 40 H 1.09001 * 113.61059 * 139.97697 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0658 -3.5640 0.4031 12 6 1.2606 -4.8290 0.5939 13 6 1.8476 -5.6973 -0.5314 14 1 2.7976 -6.1645 -0.2720 15 6 0.8439 -6.6847 -1.1305 16 7 1.5244 -7.5422 -2.1042 17 6 0.8338 -8.4944 -2.7622 18 8 -0.3529 -8.6412 -2.5483 19 6 1.5235 -9.3636 -3.7483 20 6 0.8209 -10.3567 -4.4319 21 6 1.5114 -11.1387 -5.3468 22 6 0.7996 -12.2216 -6.1160 23 9 1.6963 -13.2566 -6.4024 24 9 -0.2584 -12.7203 -5.3484 25 7 2.8031 -10.9252 -5.5310 26 6 3.4381 -9.9811 -4.8641 27 7 2.8230 -9.2123 -3.9913 28 6 1.9980 -4.4016 -1.3457 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 1.5928 -5.1218 1.5898 32 1 0.1802 -4.6997 0.5291 33 1 0.4218 -7.3005 -0.3364 34 1 0.0449 -6.1342 -1.6272 35 1 2.4721 -7.4252 -2.2747 36 1 -0.2335 -10.5104 -4.2560 37 1 0.4104 -11.8100 -7.0472 38 1 4.4937 -9.8348 -5.0396 39 1 1.1193 -4.1561 -1.9421 40 1 2.9257 -4.3493 -1.9156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086121241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:45 Heat of formation + Delta-G solvation = -75.206219 kcal Electronic energy + Delta-G solvation = -25987.731759 eV Core-core repulsion = 21666.584980 eV Total energy + Delta-G solvation = -4321.146780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.15639 -48.17267 -42.55295 -40.85980 -39.87057 -36.42329 -35.72318 -35.11392 -33.76887 -32.00146 -29.28182 -28.65922 -26.55276 -26.24682 -25.49131 -24.79070 -22.74068 -22.09769 -20.68813 -19.77565 -19.39869 -19.23785 -18.68100 -18.08063 -17.51031 -16.92359 -16.90436 -16.79012 -16.70179 -16.43587 -15.89540 -15.84441 -15.59610 -15.20256 -15.00737 -14.88861 -14.53211 -14.48973 -14.06416 -13.48195 -13.33407 -13.15423 -12.79285 -12.66477 -12.56942 -12.34761 -12.11910 -12.08419 -11.89101 -11.78141 -11.57340 -11.40885 -11.11376 -11.03733 -10.83775 -10.69135 -10.27159 -9.08861 -8.39322 -5.32829 -0.91974 -0.57030 1.40878 1.58265 1.65059 1.69060 1.82889 2.01592 2.43742 2.63550 2.71943 2.83290 3.01671 3.32004 3.38380 3.56424 3.60380 3.63826 3.72306 3.80880 3.82739 4.08423 4.09858 4.23343 4.29665 4.31492 4.46008 4.65583 4.86362 4.88388 4.88761 4.95144 5.09821 5.18485 5.30897 5.39277 5.58140 5.64576 6.21829 6.49138 6.58124 6.86110 7.09932 8.00608 8.12813 9.12507 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.001852 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.977400 B =15115.835228 C =15417.558493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.110 4.110 3 Si 1.130 2.870 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.069 0.931 9 N -0.742 5.742 10 C 0.146 3.854 11 H 0.078 0.922 12 C -0.135 4.135 13 C -0.095 4.095 14 H 0.121 0.879 15 C 0.135 3.865 16 N -0.688 5.688 17 C 0.564 3.436 18 O -0.555 6.555 19 C 0.131 3.869 20 C -0.144 4.144 21 C 0.102 3.898 22 C 0.329 3.671 23 F -0.193 7.193 24 F -0.195 7.195 25 N -0.488 5.488 26 C 0.305 3.695 27 N -0.488 5.488 28 C -0.154 4.154 29 H 0.243 0.757 30 H 0.359 0.641 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.422 0.578 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.248 0.752 39 H 0.057 0.943 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.907 -27.314 -12.230 30.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.301 4.301 3 Si 0.955 3.045 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.037 3.963 11 H 0.096 0.904 12 C -0.175 4.175 13 C -0.114 4.114 14 H 0.139 0.861 15 C 0.012 3.988 16 N -0.339 5.339 17 C 0.348 3.652 18 O -0.433 6.433 19 C -0.017 4.017 20 C -0.167 4.167 21 C -0.048 4.048 22 C 0.275 3.725 23 F -0.174 7.174 24 F -0.176 7.176 25 N -0.202 5.202 26 C 0.018 3.982 27 N -0.204 5.204 28 C -0.194 4.194 29 H 0.054 0.946 30 H 0.191 0.809 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.190 0.810 37 H 0.200 0.800 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.131 -25.595 -12.156 29.219 hybrid contribution -0.914 -1.615 0.226 1.870 sum 6.217 -27.210 -11.930 30.354 Atomic orbital electron populations 1.70964 1.07246 1.27870 1.56532 1.27230 0.97155 1.04858 1.00830 0.82587 0.73567 0.71506 0.76831 1.21151 1.22198 1.19670 1.20494 0.92459 0.87162 1.46148 0.91270 1.42645 1.04561 1.02052 1.88882 1.21901 0.95538 0.83526 0.95330 0.90430 1.23333 1.00022 0.95581 0.98527 1.22462 0.99534 0.92898 0.96496 0.86056 1.21424 0.94926 0.91543 0.90943 1.45801 1.14464 1.33023 1.40575 1.17955 0.85873 0.80679 0.80729 1.90816 1.15639 1.70820 1.65990 1.21507 0.90777 0.94247 0.95193 1.22735 1.04449 0.94542 0.94973 1.22536 0.91537 0.96396 0.94347 1.20512 0.77106 0.80623 0.94273 1.93043 1.69216 1.61093 1.94035 1.93056 1.57173 1.88705 1.78659 1.68134 1.08340 1.18911 1.24828 1.25867 1.02268 0.84472 0.85610 1.68400 1.08524 1.26623 1.16871 1.23730 1.01098 0.96122 0.98489 0.94616 0.80899 0.90132 0.91125 0.90451 0.92440 0.74039 0.80953 0.79974 0.73635 0.92457 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.69 13.70 21.65 0.30 -61.40 16 2 C -0.11 -6.40 5.50 84.86 0.47 -5.93 16 3 Si 1.13 51.92 29.92 68.60 2.05 53.97 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.33 -18.48 9.97 84.03 0.84 -17.64 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -36.95 5.40 -320.45 -1.73 -38.68 16 10 C 0.15 5.45 4.48 45.52 0.20 5.66 16 11 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 12 C -0.14 -3.93 7.39 31.12 0.23 -3.70 16 13 C -0.09 -2.19 3.75 -10.27 -0.04 -2.23 16 14 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.13 3.09 5.51 86.38 0.48 3.57 16 16 N -0.69 -14.11 5.55 -465.37 -2.58 -16.69 16 17 C 0.56 13.11 7.83 86.96 0.68 13.79 16 18 O -0.56 -16.37 16.43 -3.64 -0.06 -16.43 16 19 C 0.13 2.47 6.79 41.99 0.29 2.76 16 20 C -0.14 -2.34 9.07 22.71 0.21 -2.14 16 21 C 0.10 1.41 6.61 42.63 0.28 1.69 16 22 C 0.33 3.24 5.74 71.24 0.41 3.65 16 23 F -0.19 -2.76 17.09 44.97 0.77 -2.00 16 24 F -0.19 -2.55 16.55 44.97 0.74 -1.80 16 25 N -0.49 -6.99 10.08 -188.12 -1.90 -8.89 16 26 C 0.30 3.67 12.28 180.92 2.22 5.89 16 27 N -0.49 -7.69 9.70 -189.16 -1.84 -9.52 16 28 C -0.15 -4.76 7.43 31.12 0.23 -4.53 16 29 H 0.24 15.31 6.77 -92.71 -0.63 14.69 16 30 H 0.36 18.87 6.76 -92.71 -0.63 18.25 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.21 8.08 -2.38 -0.02 2.19 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.55 7.84 -2.38 -0.02 1.54 16 35 H 0.42 7.12 7.86 -92.71 -0.73 6.39 16 36 H 0.17 2.67 7.37 -2.91 -0.02 2.65 16 37 H 0.18 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.25 0.95 8.06 -2.91 -0.02 0.92 16 39 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -74.96 355.36 2.15 -72.81 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.10 Total: 27.78 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 6.49 Total: 0.84 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -7.75 Total: -135.18 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.06 Total: -16.43 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 1.51 Total: -3.80 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.97 kcal Total: -74.96 2.15 -72.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086121241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.391 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds