Wall clock time and date at job start Sat Apr 11 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35468 * 126.43030 * 2 1 4 4 Cl 1.73599 * 127.23795 * 359.96224 * 3 2 1 5 5 C 1.41547 * 105.52137 * 180.02562 * 3 2 1 6 6 C 1.47660 * 126.46045 * 180.02562 * 5 3 2 7 7 O 1.21574 * 120.00075 * 0.26897 * 6 5 3 8 8 N 1.34784 * 119.99785 * 179.97438 * 6 5 3 9 9 C 1.46499 * 119.99971 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47267 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.85072 * 316.19635 * 10 9 8 12 12 C 1.53782 * 113.61634 * 87.50279 * 10 9 8 13 13 C 1.53779 * 87.08194 * 139.98185 * 12 10 9 14 14 H 1.08999 * 113.61494 * 89.11486 * 13 12 10 15 15 N 1.46506 * 113.69224 * 220.00868 * 13 12 10 16 16 C 1.36932 * 119.99778 * 252.53784 * 15 13 12 17 17 H 1.07998 * 120.00298 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99904 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00214 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00111 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47100 * 89.99878 * 20 18 16 22 22 H 1.48492 * 109.47745 * 209.99964 * 20 18 16 23 23 H 1.48505 * 109.47053 * 330.00279 * 20 18 16 24 24 C 1.53776 * 87.08283 * 334.56686 * 13 12 10 25 25 N 1.31828 * 107.07704 * 0.26059 * 5 3 2 26 26 N 1.28472 * 110.13447 * 359.55706 * 25 5 3 27 27 C 1.46500 * 124.93351 * 180.21620 * 26 25 5 28 28 H 1.09002 * 109.47325 * 89.97679 * 1 2 3 29 29 H 1.08999 * 109.47085 * 209.97771 * 1 2 3 30 30 H 1.09003 * 109.46848 * 329.97382 * 1 2 3 31 31 H 0.96999 * 120.00044 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.47024 * 300.00310 * 9 8 6 33 33 H 1.09005 * 109.47136 * 59.99926 * 9 8 6 34 34 H 1.08999 * 113.61219 * 254.53190 * 12 10 9 35 35 H 1.08996 * 113.61440 * 25.43417 * 12 10 9 36 36 H 0.97001 * 119.99908 * 72.53164 * 15 13 12 37 37 H 0.97004 * 119.99706 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.61891 * 270.88704 * 24 13 12 39 39 H 1.09000 * 113.69333 * 139.98811 * 24 13 12 40 40 H 1.09000 * 109.47094 * 270.27190 * 27 26 25 41 41 H 1.08998 * 109.47069 * 30.27313 * 27 26 25 42 42 H 1.09003 * 109.46971 * 150.27270 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8233 2.7559 -0.0009 5 6 3.6338 0.5848 -0.0006 6 6 4.8773 1.3810 -0.0003 7 8 4.8215 2.5954 0.0055 8 7 6.0742 0.7613 -0.0005 9 6 7.3080 1.5512 -0.0007 10 6 8.5153 0.6114 -0.0015 11 1 8.4043 -0.2208 0.6936 12 6 8.9631 0.1850 -1.4095 13 6 10.4096 0.3393 -0.9106 14 1 10.8170 -0.5682 -0.4651 15 7 11.3105 0.9437 -1.8953 16 6 12.2497 0.1733 -2.5274 17 1 12.3265 -0.8796 -2.2999 18 6 13.1029 0.7458 -3.4607 19 7 14.0053 0.0053 -4.0687 20 14 12.9696 2.5669 -3.8548 21 1 13.8533 3.3367 -2.9428 22 1 13.3854 2.8008 -5.2610 23 1 11.5641 3.0109 -3.6737 24 6 9.8637 1.3406 0.1210 25 7 3.5457 -0.7305 -0.0067 26 7 2.3126 -1.0912 -0.0005 27 6 1.8446 -2.4794 0.0000 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 6.1187 -0.2077 -0.0004 32 1 7.3368 2.1798 -0.8908 33 1 7.3371 2.1800 0.8892 34 1 8.6951 -0.8412 -1.6608 35 1 8.6916 0.8973 -2.1885 36 1 11.2417 1.8894 -2.0994 37 1 14.6019 0.4054 -4.7207 38 1 9.8383 2.3689 -0.2396 39 1 10.3220 1.2486 1.1057 40 1 1.7276 -2.8238 -1.0275 41 1 2.5724 -3.1080 0.5133 42 1 0.8856 -2.5394 0.5147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086213296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:49 Heat of formation + Delta-G solvation = 43.276688 kcal Electronic energy + Delta-G solvation = -24436.826289 eV Core-core repulsion = 20672.613994 eV Total energy + Delta-G solvation = -3764.212295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.83696 -40.76864 -39.74796 -37.55537 -36.13714 -35.10735 -34.53877 -33.51014 -32.74243 -29.57162 -28.33768 -27.61850 -26.47016 -25.62699 -24.04175 -22.35594 -22.17686 -21.18625 -20.49849 -19.33544 -18.50031 -17.67036 -17.62753 -17.12775 -16.60998 -16.36440 -16.00197 -15.84667 -15.71158 -14.97160 -14.72526 -14.56211 -14.38404 -14.17128 -13.95982 -13.72057 -13.52574 -13.25187 -13.17164 -13.10485 -13.05033 -12.82744 -12.70533 -12.49967 -12.14311 -11.91593 -11.81200 -11.67288 -11.60743 -11.18764 -11.02157 -10.86133 -10.34210 -10.03171 -9.77213 -9.26506 -8.02742 -5.34878 0.34004 0.74832 0.91915 1.37999 1.40241 1.47411 1.65146 2.12156 2.21418 2.47993 3.25639 3.28083 3.50743 3.58956 3.69980 3.75919 3.87645 4.07539 4.10487 4.27734 4.31817 4.36209 4.38621 4.55366 4.63686 4.69156 4.73658 4.79861 4.85179 4.95545 4.97302 5.02980 5.07210 5.20496 5.30993 5.40711 5.64179 5.65790 5.78417 6.23338 6.37148 6.69378 7.08182 7.11084 7.86572 8.04512 9.18808 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002244 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.574265 B =12473.464747 C =13083.582000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.041 3.959 3 C -0.137 4.137 4 Cl -0.020 7.020 5 C -0.028 4.028 6 C 0.593 3.407 7 O -0.556 6.556 8 N -0.702 5.702 9 C 0.138 3.862 10 C -0.098 4.098 11 H 0.117 0.883 12 C -0.156 4.156 13 C 0.147 3.853 14 H 0.079 0.921 15 N -0.744 5.744 16 C -0.230 4.230 17 H 0.060 0.940 18 C -0.067 4.067 19 N -0.984 5.984 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.255 1.255 24 C -0.133 4.133 25 N -0.254 5.254 26 N -0.268 5.268 27 C 0.071 3.929 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.365 0.635 37 H 0.257 0.743 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.988 -4.390 13.290 37.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.174 4.174 4 Cl 0.008 6.992 5 C -0.188 4.188 6 C 0.377 3.623 7 O -0.432 6.432 8 N -0.354 5.354 9 C 0.015 3.985 10 C -0.117 4.117 11 H 0.135 0.865 12 C -0.197 4.197 13 C 0.038 3.962 14 H 0.097 0.903 15 N -0.385 5.385 16 C -0.361 4.361 17 H 0.078 0.922 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.781 3.219 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.180 1.180 24 C -0.173 4.173 25 N -0.091 5.091 26 N -0.058 5.058 27 C -0.066 4.066 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.251 0.749 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.198 0.802 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -34.284 -4.681 13.232 37.046 hybrid contribution 0.264 1.421 -0.811 1.658 sum -34.020 -3.260 12.421 36.363 Atomic orbital electron populations 1.20633 0.82567 1.05955 1.05227 1.21690 0.97119 0.84728 1.04965 1.20781 0.92367 0.88154 1.16128 1.98342 1.90745 1.12835 1.97276 1.21699 0.94117 0.90323 1.12655 1.17074 0.82442 0.86274 0.76475 1.90809 1.87148 1.13956 1.51336 1.45778 1.04684 1.11332 1.73586 1.21356 0.81658 0.93628 1.01894 1.22472 0.92324 0.98904 0.98035 0.86456 1.23754 0.98618 1.01039 0.96255 1.21915 0.88292 0.96317 0.89657 0.90302 1.42797 1.39645 1.08103 1.47947 1.19131 1.08096 0.93198 1.15725 0.92246 1.25508 0.98281 1.02361 0.99674 1.69883 1.24527 1.36977 1.32107 0.85429 0.78689 0.80918 0.76864 1.20320 1.22400 1.17984 1.23346 0.94808 0.99001 1.00095 1.73569 1.03627 1.12706 1.19192 1.45852 1.01703 1.09174 1.49038 1.22788 1.03577 0.73588 1.06656 0.88309 0.87283 0.89268 0.74898 0.92605 0.90845 0.91861 0.91766 0.80166 0.93420 0.90302 0.89716 0.87643 0.87344 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 9.99 71.24 0.71 0.31 16 2 C 0.04 0.58 6.94 41.33 0.29 0.87 16 3 C -0.14 -3.06 6.79 22.45 0.15 -2.91 16 4 Cl -0.02 -0.48 27.92 -2.72 -0.08 -0.55 16 5 C -0.03 -0.72 7.13 42.45 0.30 -0.42 16 6 C 0.59 17.17 7.82 86.73 0.68 17.85 16 7 O -0.56 -19.50 15.87 -3.95 -0.06 -19.56 16 8 N -0.70 -17.16 5.55 -466.15 -2.59 -19.74 16 9 C 0.14 3.44 5.51 86.38 0.48 3.92 16 10 C -0.10 -2.35 3.75 -10.27 -0.04 -2.39 16 11 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 12 C -0.16 -4.87 7.43 31.12 0.23 -4.64 16 13 C 0.15 5.36 4.48 45.51 0.20 5.56 16 14 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 15 N -0.74 -34.90 5.21 -320.45 -1.67 -36.57 16 16 C -0.23 -13.24 10.45 84.03 0.88 -12.36 16 17 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 19 N -0.98 -63.93 13.97 21.65 0.30 -63.63 16 20 Si 0.95 46.61 27.73 68.60 1.90 48.52 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 23 H -0.26 -11.42 6.52 99.48 0.65 -10.77 16 24 C -0.13 -3.71 7.39 31.12 0.23 -3.48 16 25 N -0.25 -5.15 11.66 -48.17 -0.56 -5.72 16 26 N -0.27 -3.55 3.72 -355.38 -1.32 -4.87 16 27 C 0.07 0.13 11.12 127.77 1.42 1.55 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.11 -0.20 7.02 -2.39 -0.02 -0.22 16 30 H 0.09 0.50 8.03 -2.39 -0.02 0.48 16 31 H 0.41 8.60 8.19 -92.71 -0.76 7.84 16 32 H 0.06 1.60 7.84 -2.38 -0.02 1.58 16 33 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 2.20 7.89 -2.39 -0.02 2.18 16 36 H 0.37 16.62 5.79 -92.71 -0.54 16.08 16 37 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.13 -0.64 6.98 -2.39 -0.02 -0.66 16 Total: -1.00 -81.13 367.97 1.63 -79.50 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.29 Total: 22.30 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 6.00 Total: 0.32 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -5.84 Total: -130.52 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.06 Total: -19.56 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.90 Total: 48.52 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.55 kcal Total: -81.13 1.63 -79.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086213296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.776 kcal (2) G-P(sol) polarization free energy of solvation -81.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds