Wall clock time and date at job start Sat Apr 11 2020 01:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35461 * 126.43401 * 2 1 4 4 Cl 1.73611 * 127.23593 * 359.97438 * 3 2 1 5 5 C 1.41539 * 105.52314 * 180.14121 * 3 2 1 6 6 C 1.47672 * 126.46094 * 179.84362 * 5 3 2 7 7 O 1.21578 * 119.99673 * 359.71085 * 6 5 3 8 8 N 1.34772 * 120.00220 * 179.70891 * 6 5 3 9 9 C 1.46494 * 120.00463 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47391 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.90825 * 316.25137 * 10 9 8 12 12 C 1.53962 * 113.66529 * 87.55384 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88900 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46501 * 113.61142 * 89.18830 * 13 12 10 16 16 C 1.36932 * 119.99939 * 107.50245 * 15 13 12 17 17 H 1.08001 * 120.00293 * 359.97438 * 16 15 13 18 18 C 1.38817 * 120.00189 * 179.97438 * 16 15 13 19 19 N 1.31612 * 120.00391 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99630 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47028 * 90.00012 * 20 18 16 22 22 H 1.48496 * 109.47213 * 210.00326 * 20 18 16 23 23 H 1.48509 * 109.47361 * 329.99928 * 20 18 16 24 24 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 25 25 N 1.31823 * 107.07858 * 359.57660 * 5 3 2 26 26 N 1.28471 * 110.13307 * 0.26763 * 25 5 3 27 27 C 1.46502 * 124.92924 * 180.02562 * 26 25 5 28 28 H 1.09003 * 109.46614 * 270.32405 * 1 2 3 29 29 H 1.08990 * 109.47050 * 30.32545 * 1 2 3 30 30 H 1.09001 * 109.46921 * 150.32963 * 1 2 3 31 31 H 0.97000 * 119.99857 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.47287 * 60.00002 * 9 8 6 33 33 H 1.09004 * 109.47020 * 300.00283 * 9 8 6 34 34 H 1.08997 * 113.53543 * 25.33574 * 12 10 9 35 35 H 1.08994 * 113.66446 * 254.45777 * 12 10 9 36 36 H 0.97001 * 119.99973 * 287.49325 * 15 13 12 37 37 H 0.96995 * 120.00333 * 179.97438 * 19 18 16 38 38 H 1.09002 * 113.61445 * 139.98212 * 24 13 12 39 39 H 1.09002 * 113.61408 * 270.79943 * 24 13 12 40 40 H 1.09001 * 109.46657 * 89.97593 * 27 26 25 41 41 H 1.09004 * 109.47016 * 209.97101 * 27 26 25 42 42 H 1.08997 * 109.47704 * 329.97616 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8234 2.7559 -0.0006 5 6 3.6337 0.5847 -0.0034 6 6 4.8774 1.3809 -0.0079 7 8 4.8215 2.5954 -0.0144 8 7 6.0742 0.7613 -0.0048 9 6 7.3080 1.5512 -0.0099 10 6 8.5153 0.6113 -0.0057 11 1 8.4050 -0.2178 0.6931 12 6 8.9651 0.1766 -1.4125 13 6 10.4113 0.3359 -0.9145 14 1 11.0796 0.7834 -1.6503 15 7 10.9610 -0.8800 -0.3099 16 6 11.9099 -1.6076 -0.9771 17 1 12.2529 -1.2854 -1.9492 18 6 12.4312 -2.7595 -0.4041 19 7 13.3437 -3.4586 -1.0451 20 14 11.8386 -3.3165 1.2776 21 1 10.6730 -4.2224 1.1167 22 1 12.9337 -4.0379 1.9744 23 1 11.4381 -2.1320 2.0788 24 6 9.8638 1.3412 0.1123 25 7 3.5456 -0.7306 0.0042 26 7 2.3126 -1.0912 0.0062 27 6 1.8446 -2.4795 0.0147 28 1 -0.3633 0.0058 1.0277 29 1 -0.3633 0.8870 -0.5188 30 1 -0.3633 -0.8929 -0.5087 31 1 6.1187 -0.2076 0.0000 32 1 7.3374 2.1849 0.8764 33 1 7.3366 2.1747 -0.9035 34 1 8.6921 0.8848 -2.1949 35 1 8.6988 -0.8512 -1.6588 36 1 10.6528 -1.1696 0.5630 37 1 13.7082 -4.2633 -0.6445 38 1 10.3230 1.2535 1.0970 39 1 9.8379 2.3680 -0.2527 40 1 1.7288 -2.8175 1.0445 41 1 0.8850 -2.5426 -0.4985 42 1 2.5717 -3.1112 -0.4954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086493767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:02 Heat of formation + Delta-G solvation = 70.350828 kcal Electronic energy + Delta-G solvation = -24639.226723 eV Core-core repulsion = 20876.188451 eV Total energy + Delta-G solvation = -3763.038272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.11767 -39.61627 -38.49889 -36.73715 -34.70881 -34.01902 -33.17746 -32.91975 -30.68401 -28.57291 -27.72842 -26.82109 -25.13881 -23.85063 -22.92086 -21.64358 -21.40433 -20.00449 -18.55408 -17.76567 -17.55353 -16.97146 -16.81230 -15.89764 -15.28642 -15.19251 -14.87649 -14.45241 -14.22620 -13.93627 -13.79375 -13.57998 -13.52381 -13.33409 -13.05822 -12.80276 -12.73951 -12.47048 -12.09250 -12.00588 -11.73800 -11.52700 -11.34308 -10.92887 -10.89201 -10.49600 -10.34662 -10.13827 -9.90651 -9.65175 -9.56893 -9.50866 -9.07318 -8.95814 -8.89716 -7.30018 -5.79886 -3.15778 1.19913 1.49293 1.58033 2.34359 3.10700 3.24671 3.34863 3.37658 3.42914 3.95159 4.05068 4.38956 4.49106 4.55921 4.56124 4.82572 4.90208 4.95537 4.97890 4.99192 5.13514 5.21582 5.28082 5.39914 5.46210 5.55324 5.64192 5.77776 5.90080 5.95550 6.15879 6.19187 6.26659 6.37716 6.51903 6.65803 6.76958 6.91900 7.28521 7.57895 7.98437 8.16135 8.39951 9.17924 9.90239 10.09723 11.38300 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.002565 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.771088 B =10912.230594 C =12116.753953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.024 3.976 3 C -0.104 4.104 4 Cl -0.009 7.009 5 C 0.002 3.998 6 C 0.597 3.403 7 O -0.521 6.521 8 N -0.711 5.711 9 C 0.132 3.868 10 C -0.124 4.124 11 H 0.090 0.910 12 C -0.166 4.166 13 C 0.172 3.828 14 H 0.071 0.929 15 N -0.730 5.730 16 C -0.245 4.245 17 H 0.092 0.908 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.148 4.148 25 N -0.245 5.245 26 N -0.277 5.277 27 C 0.085 3.915 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.015 5.980 3.136 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.142 4.142 4 Cl 0.020 6.980 5 C -0.159 4.159 6 C 0.380 3.620 7 O -0.395 6.395 8 N -0.362 5.362 9 C 0.009 3.991 10 C -0.143 4.143 11 H 0.108 0.892 12 C -0.207 4.207 13 C 0.061 3.939 14 H 0.089 0.911 15 N -0.370 5.370 16 C -0.375 4.375 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.187 4.187 25 N -0.080 5.080 26 N -0.066 5.066 27 C -0.055 4.055 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.242 0.758 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -29.245 5.798 2.972 29.962 hybrid contribution -0.921 -0.374 1.246 1.594 sum -30.166 5.424 4.217 30.938 Atomic orbital electron populations 1.20412 0.85742 1.04351 1.03827 1.21122 0.95480 0.85751 1.07776 1.20504 0.92014 0.87750 1.13899 1.98357 1.90795 1.11737 1.97111 1.21887 0.94356 0.89455 1.10181 1.16770 0.81564 0.86445 0.77175 1.90832 1.86555 1.12397 1.49742 1.45896 1.05187 1.11123 1.73990 1.21518 0.81662 0.93765 1.02143 1.22786 0.93036 0.98496 0.99948 0.89216 1.23892 1.00916 1.01361 0.94520 1.21003 0.91984 0.87105 0.93830 0.91068 1.42515 1.47851 1.26461 1.20195 1.19120 1.13029 1.03496 1.01870 0.89017 1.24679 0.98681 0.97650 0.98084 1.69693 1.31460 1.18353 1.38490 0.86566 0.78129 0.78487 0.85460 1.21073 1.21678 1.20287 1.23458 0.94914 0.99098 1.01277 1.73663 1.01888 1.13726 1.18767 1.45298 1.02587 1.07511 1.51214 1.22276 1.01958 0.76288 1.04938 0.89755 0.89189 0.90572 0.75771 0.91484 0.91096 0.90890 0.91312 0.80518 0.93008 0.91439 0.89934 0.89213 0.88346 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 9.99 36.01 0.36 -0.02 16 2 C 0.02 0.21 6.94 -81.90 -0.57 -0.36 16 3 C -0.10 -1.24 6.79 -39.32 -0.27 -1.50 16 4 Cl -0.01 -0.10 27.93 -51.86 -1.45 -1.55 16 5 C 0.00 0.03 7.13 -82.76 -0.59 -0.56 16 6 C 0.60 8.86 7.82 -12.41 -0.10 8.77 16 7 O -0.52 -8.95 15.87 5.30 0.08 -8.86 16 8 N -0.71 -9.54 5.55 -61.31 -0.34 -9.88 16 9 C 0.13 1.76 5.51 -4.05 -0.02 1.74 16 10 C -0.12 -1.78 3.64 -89.71 -0.33 -2.11 16 11 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 12 C -0.17 -2.68 7.44 -25.82 -0.19 -2.87 16 13 C 0.17 3.24 4.56 -67.12 -0.31 2.93 16 14 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 15 N -0.73 -16.99 5.11 -52.64 -0.27 -17.26 16 16 C -0.25 -6.86 10.45 -15.06 -0.16 -7.01 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 20 Si 0.88 21.88 27.73 -169.99 -4.71 17.17 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 24 C -0.15 -2.24 7.38 -25.92 -0.19 -2.43 16 25 N -0.24 -2.89 11.66 33.42 0.39 -2.50 16 26 N -0.28 -2.40 3.72 -63.68 -0.24 -2.64 16 27 C 0.09 0.31 11.12 59.85 0.67 0.98 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.39 8.04 -51.93 -0.42 -0.02 16 30 H 0.08 0.16 7.03 -51.93 -0.36 -0.21 16 31 H 0.41 5.11 8.19 -40.82 -0.33 4.78 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 34 H 0.07 1.07 7.90 -51.93 -0.41 0.66 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.36 8.27 5.76 -40.82 -0.24 8.03 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.09 6.98 -51.93 -0.36 -0.27 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -35.09 367.87 -7.93 -43.02 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.92 Total: 7.71 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.79 Total: -2.40 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.32 Total: -60.62 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.45 Total: -1.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.09 -7.93 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086493767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.369 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds