Wall clock time and date at job start Sat Apr 11 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35461 * 126.43401 * 2 1 4 4 Cl 1.73611 * 127.23593 * 359.97438 * 3 2 1 5 5 C 1.41539 * 105.52314 * 180.14121 * 3 2 1 6 6 C 1.47672 * 126.46094 * 179.84362 * 5 3 2 7 7 O 1.21578 * 119.99673 * 359.71085 * 6 5 3 8 8 N 1.34772 * 120.00220 * 179.70891 * 6 5 3 9 9 C 1.46494 * 120.00463 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47391 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.90825 * 316.25137 * 10 9 8 12 12 C 1.53962 * 113.66529 * 87.55384 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88900 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46501 * 113.61142 * 89.18830 * 13 12 10 16 16 C 1.36932 * 119.99939 * 107.50245 * 15 13 12 17 17 H 1.08001 * 120.00293 * 359.97438 * 16 15 13 18 18 C 1.38817 * 120.00189 * 179.97438 * 16 15 13 19 19 N 1.31612 * 120.00391 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99630 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47028 * 90.00012 * 20 18 16 22 22 H 1.48496 * 109.47213 * 210.00326 * 20 18 16 23 23 H 1.48509 * 109.47361 * 329.99928 * 20 18 16 24 24 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 25 25 N 1.31823 * 107.07858 * 359.57660 * 5 3 2 26 26 N 1.28471 * 110.13307 * 0.26763 * 25 5 3 27 27 C 1.46502 * 124.92924 * 180.02562 * 26 25 5 28 28 H 1.09003 * 109.46614 * 270.32405 * 1 2 3 29 29 H 1.08990 * 109.47050 * 30.32545 * 1 2 3 30 30 H 1.09001 * 109.46921 * 150.32963 * 1 2 3 31 31 H 0.97000 * 119.99857 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.47287 * 60.00002 * 9 8 6 33 33 H 1.09004 * 109.47020 * 300.00283 * 9 8 6 34 34 H 1.08997 * 113.53543 * 25.33574 * 12 10 9 35 35 H 1.08994 * 113.66446 * 254.45777 * 12 10 9 36 36 H 0.97001 * 119.99973 * 287.49325 * 15 13 12 37 37 H 0.96995 * 120.00333 * 179.97438 * 19 18 16 38 38 H 1.09002 * 113.61445 * 139.98212 * 24 13 12 39 39 H 1.09002 * 113.61408 * 270.79943 * 24 13 12 40 40 H 1.09001 * 109.46657 * 89.97593 * 27 26 25 41 41 H 1.09004 * 109.47016 * 209.97101 * 27 26 25 42 42 H 1.08997 * 109.47704 * 329.97616 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8234 2.7559 -0.0006 5 6 3.6337 0.5847 -0.0034 6 6 4.8774 1.3809 -0.0079 7 8 4.8215 2.5954 -0.0144 8 7 6.0742 0.7613 -0.0048 9 6 7.3080 1.5512 -0.0099 10 6 8.5153 0.6113 -0.0057 11 1 8.4050 -0.2178 0.6931 12 6 8.9651 0.1766 -1.4125 13 6 10.4113 0.3359 -0.9145 14 1 11.0796 0.7834 -1.6503 15 7 10.9610 -0.8800 -0.3099 16 6 11.9099 -1.6076 -0.9771 17 1 12.2529 -1.2854 -1.9492 18 6 12.4312 -2.7595 -0.4041 19 7 13.3437 -3.4586 -1.0451 20 14 11.8386 -3.3165 1.2776 21 1 10.6730 -4.2224 1.1167 22 1 12.9337 -4.0379 1.9744 23 1 11.4381 -2.1320 2.0788 24 6 9.8638 1.3412 0.1123 25 7 3.5456 -0.7306 0.0042 26 7 2.3126 -1.0912 0.0062 27 6 1.8446 -2.4795 0.0147 28 1 -0.3633 0.0058 1.0277 29 1 -0.3633 0.8870 -0.5188 30 1 -0.3633 -0.8929 -0.5087 31 1 6.1187 -0.2076 0.0000 32 1 7.3374 2.1849 0.8764 33 1 7.3366 2.1747 -0.9035 34 1 8.6921 0.8848 -2.1949 35 1 8.6988 -0.8512 -1.6588 36 1 10.6528 -1.1696 0.5630 37 1 13.7082 -4.2633 -0.6445 38 1 10.3230 1.2535 1.0970 39 1 9.8379 2.3680 -0.2527 40 1 1.7288 -2.8175 1.0445 41 1 0.8850 -2.5426 -0.4985 42 1 2.5717 -3.1112 -0.4954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086493767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:01 Heat of formation + Delta-G solvation = 45.206169 kcal Electronic energy + Delta-G solvation = -24640.317078 eV Core-core repulsion = 20876.188451 eV Total energy + Delta-G solvation = -3764.128626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.84815 -40.79462 -39.81260 -37.55681 -36.08872 -35.05934 -34.54584 -33.51745 -32.65012 -29.58464 -28.35289 -27.63720 -26.45208 -25.48459 -24.15994 -22.95453 -22.17617 -20.99693 -20.05606 -19.54064 -18.49175 -17.67314 -17.63776 -17.04607 -16.61263 -16.36690 -16.00842 -15.84518 -15.46376 -15.03554 -14.80700 -14.63508 -14.47205 -14.23060 -14.07801 -13.72504 -13.54201 -13.33871 -13.11788 -13.09938 -13.00656 -12.83196 -12.66815 -12.49677 -12.25086 -11.89880 -11.80693 -11.65257 -11.51940 -11.16661 -10.93594 -10.83844 -10.34823 -10.03529 -9.77720 -9.29765 -8.02821 -5.36311 0.33540 0.74527 0.90860 1.37359 1.40725 1.48088 1.64433 2.12828 2.20931 2.47853 3.25668 3.27853 3.49982 3.51438 3.71072 3.74398 3.86588 3.99835 4.08369 4.27370 4.30053 4.34066 4.37829 4.61630 4.67263 4.71087 4.73258 4.79701 4.85028 4.93603 4.97292 5.06275 5.08707 5.23234 5.31646 5.46186 5.54175 5.64019 5.80785 6.22685 6.35592 6.68064 7.07658 7.09322 7.84684 8.03360 9.18746 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.002565 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.771088 B =10912.230594 C =12116.753953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.041 3.959 3 C -0.135 4.135 4 Cl -0.018 7.018 5 C -0.029 4.029 6 C 0.594 3.406 7 O -0.553 6.553 8 N -0.706 5.706 9 C 0.139 3.861 10 C -0.107 4.107 11 H 0.088 0.912 12 C -0.155 4.155 13 C 0.146 3.854 14 H 0.059 0.941 15 N -0.734 5.734 16 C -0.232 4.232 17 H 0.057 0.943 18 C -0.065 4.065 19 N -0.984 5.984 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.251 1.251 24 C -0.131 4.131 25 N -0.259 5.259 26 N -0.269 5.269 27 C 0.071 3.929 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.411 0.589 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.171 5.725 4.580 33.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.173 4.173 4 Cl 0.011 6.989 5 C -0.188 4.188 6 C 0.379 3.621 7 O -0.429 6.429 8 N -0.357 5.357 9 C 0.016 3.984 10 C -0.125 4.125 11 H 0.106 0.894 12 C -0.196 4.196 13 C 0.037 3.963 14 H 0.077 0.923 15 N -0.376 5.376 16 C -0.363 4.363 17 H 0.075 0.925 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.782 3.218 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.176 1.176 24 C -0.170 4.170 25 N -0.096 5.096 26 N -0.059 5.059 27 C -0.066 4.066 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.247 0.753 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -32.440 5.570 4.415 33.209 hybrid contribution 0.001 -0.310 0.678 0.746 sum -32.438 5.260 5.093 33.254 Atomic orbital electron populations 1.20635 0.82496 1.05924 1.05298 1.21713 0.97145 0.84691 1.04926 1.20756 0.92217 0.88217 1.16097 1.98339 1.90718 1.12605 1.97275 1.21748 0.94284 0.90246 1.12535 1.17031 0.82299 0.86285 0.76491 1.90799 1.87113 1.13665 1.51364 1.45857 1.04984 1.11308 1.73557 1.21411 0.81139 0.93376 1.02426 1.22615 0.93239 0.98363 0.98332 0.89391 1.23755 0.98548 1.00970 0.96297 1.21332 0.92941 0.86681 0.95344 0.92267 1.42444 1.47314 1.27516 1.20280 1.19073 1.13033 1.03525 1.00657 0.92521 1.25516 0.99387 0.98097 1.02666 1.69881 1.33647 1.19174 1.40765 0.85406 0.77373 0.78663 0.80329 1.20295 1.22332 1.17587 1.23351 0.94243 0.99395 0.99991 1.73601 1.03711 1.12972 1.19317 1.45842 1.01716 1.09190 1.49127 1.22775 1.03473 0.73689 1.06689 0.88133 0.89187 0.87457 0.75279 0.91034 0.91008 0.89054 0.93073 0.80001 0.93329 0.91400 0.87306 0.87448 0.84931 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 9.99 71.24 0.71 0.26 16 2 C 0.04 0.62 6.94 41.33 0.29 0.91 16 3 C -0.14 -3.10 6.79 22.44 0.15 -2.95 16 4 Cl -0.02 -0.41 27.93 -2.72 -0.08 -0.49 16 5 C -0.03 -0.75 7.13 42.45 0.30 -0.45 16 6 C 0.59 17.49 7.82 86.74 0.68 18.17 16 7 O -0.55 -19.03 15.87 -3.96 -0.06 -19.09 16 8 N -0.71 -18.27 5.55 -466.15 -2.59 -20.86 16 9 C 0.14 3.47 5.51 86.38 0.48 3.95 16 10 C -0.11 -2.85 3.64 -10.20 -0.04 -2.89 16 11 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 12 C -0.16 -4.82 7.44 31.18 0.23 -4.59 16 13 C 0.15 5.38 4.56 45.52 0.21 5.59 16 14 H 0.06 2.30 8.10 -2.39 -0.02 2.28 16 15 N -0.73 -33.76 5.11 -320.44 -1.64 -35.40 16 16 C -0.23 -13.21 10.45 84.04 0.88 -12.34 16 17 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 19 N -0.98 -63.27 13.97 21.65 0.30 -62.96 16 20 Si 0.96 45.20 27.73 68.60 1.90 47.10 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 24 C -0.13 -3.65 7.38 31.12 0.23 -3.42 16 25 N -0.26 -5.78 11.66 -48.17 -0.56 -6.34 16 26 N -0.27 -4.02 3.72 -355.38 -1.32 -5.34 16 27 C 0.07 0.28 11.12 127.77 1.42 1.70 16 28 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.09 0.54 8.04 -2.39 -0.02 0.52 16 30 H 0.11 -0.08 7.03 -2.39 -0.02 -0.10 16 31 H 0.41 9.91 8.19 -92.71 -0.76 9.15 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.81 7.84 -2.38 -0.02 1.79 16 34 H 0.09 2.51 7.90 -2.39 -0.02 2.49 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.37 16.09 5.76 -92.71 -0.53 15.55 16 37 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 2.51 8.10 -2.39 -0.02 2.49 16 40 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.13 -0.38 6.98 -2.39 -0.02 -0.40 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -79.15 367.87 1.67 -77.48 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.29 Total: 25.35 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.01 Total: 0.56 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -5.81 Total: -130.91 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.06 Total: -19.09 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -79.15 1.67 -77.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086493767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.682 kcal (2) G-P(sol) polarization free energy of solvation -79.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds