Wall clock time and date at job start Sat Apr 11 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 N 1.35637 * 126.43279 * 265.02509 * 3 2 1 5 5 H 0.96995 * 124.93626 * 359.97438 * 4 3 2 6 6 N 1.28476 * 110.12888 * 179.97438 * 4 3 2 7 7 C 1.31829 * 110.13478 * 359.97438 * 6 4 3 8 8 C 1.47659 * 126.46047 * 180.02562 * 7 6 4 9 9 O 1.21573 * 120.00210 * 179.97438 * 8 7 6 10 10 N 1.34783 * 120.00000 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99817 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46998 * 179.97438 * 11 10 8 13 13 C 1.53785 * 113.61551 * 274.13987 * 12 11 10 14 14 C 1.53963 * 87.01851 * 220.04661 * 13 12 11 15 15 N 1.46500 * 113.53477 * 270.80986 * 14 13 12 16 16 C 1.36936 * 120.00195 * 252.49114 * 15 14 13 17 17 H 1.08001 * 119.99449 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00136 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99798 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47422 * 90.00210 * 20 18 16 22 22 H 1.48502 * 109.46866 * 210.00201 * 20 18 16 23 23 H 1.48497 * 109.47309 * 329.99600 * 20 18 16 24 24 C 1.53780 * 113.61574 * 176.52723 * 12 11 10 25 25 C 1.35458 * 126.42896 * 84.71594 * 3 2 1 26 26 Cl 1.73603 * 127.24125 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 0.97000 * 120.00077 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47380 * 300.00386 * 11 10 8 34 34 H 1.08997 * 109.47062 * 60.00070 * 11 10 8 35 35 H 1.09007 * 112.84880 * 45.33624 * 12 11 10 36 36 H 1.08990 * 113.61279 * 334.55962 * 13 12 11 37 37 H 1.08996 * 113.61426 * 105.47616 * 13 12 11 38 38 H 1.08994 * 113.74233 * 139.94043 * 14 13 12 39 39 H 0.96999 * 120.00116 * 72.50083 * 15 14 13 40 40 H 0.96997 * 119.99786 * 180.02562 * 19 18 16 41 41 H 1.09003 * 113.61615 * 254.52845 * 24 12 11 42 42 H 1.08994 * 113.61108 * 25.43622 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3901 2.1488 -1.0872 5 1 2.3623 1.8300 -2.0028 6 7 2.7711 3.3220 -0.7279 7 6 2.6920 3.4433 0.5824 8 6 3.0402 4.6392 1.3755 9 8 2.9211 4.6222 2.5853 10 7 3.4899 5.7498 0.7582 11 6 3.8359 6.9361 1.5451 12 6 4.3160 8.0468 0.6089 13 6 5.8151 7.9662 0.2753 14 6 5.8433 9.5005 0.4001 15 7 5.5504 10.1951 -0.8560 16 6 6.5532 10.8344 -1.5348 17 1 7.5601 10.8263 -1.1442 18 6 6.2756 11.4930 -2.7248 19 7 5.0484 11.5034 -3.2005 20 14 7.6438 12.3646 -3.6510 21 1 8.2727 11.4203 -4.6091 22 1 7.0805 13.5209 -4.3932 23 1 8.6658 12.8457 -2.6871 24 6 4.6254 9.3694 1.3300 25 6 2.2058 2.2127 1.0853 26 17 1.8979 1.8039 2.7441 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.5846 5.7635 -0.2071 33 1 2.9578 7.2770 2.0937 34 1 4.6296 6.6863 2.2491 35 1 3.6794 8.1661 -0.2678 36 1 6.4049 7.4554 1.0364 37 1 6.0193 7.6055 -0.7328 38 1 6.7337 9.8839 0.8983 39 1 4.6462 10.2022 -1.2069 40 1 4.8546 11.9633 -4.0322 41 1 3.8706 10.1398 1.1721 42 1 4.8894 9.2428 2.3799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091072410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:46 Heat of formation + Delta-G solvation = 28.797567 kcal Electronic energy + Delta-G solvation = -24407.986887 eV Core-core repulsion = 20643.146731 eV Total energy + Delta-G solvation = -3764.840157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.88899 -40.75277 -39.73328 -37.56012 -36.01783 -35.31671 -34.90570 -32.98078 -32.02041 -30.42258 -28.84110 -26.42277 -25.93179 -25.00627 -24.61895 -22.92658 -22.22430 -21.26304 -19.78482 -19.33173 -18.96374 -18.08430 -17.22117 -16.99440 -16.66016 -16.21773 -15.93676 -15.75647 -15.67707 -15.30074 -14.98577 -14.69570 -14.53009 -14.49581 -13.71925 -13.48869 -13.27748 -13.09347 -12.93652 -12.91099 -12.90386 -12.62170 -12.28622 -12.16278 -12.06321 -12.02546 -11.77131 -11.53999 -11.46717 -11.14242 -10.91017 -10.77569 -10.59231 -10.06168 -9.86365 -8.99124 -7.94757 -5.22966 0.31592 0.72482 1.00328 1.48048 1.49309 1.57868 1.82343 2.18852 2.20209 2.56211 3.28427 3.37818 3.47251 3.72484 3.76412 3.80743 3.88817 4.11282 4.17256 4.33991 4.34498 4.40048 4.42344 4.57233 4.74333 4.77718 4.84393 4.94941 5.00627 5.03837 5.10937 5.12843 5.26365 5.36201 5.36697 5.47328 5.54992 5.67545 5.87324 6.28989 6.36850 6.64485 7.09146 7.33790 8.11340 8.33588 9.28612 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.002214 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.869499 B =12644.636132 C =13612.980692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C 0.055 3.945 4 N -0.353 5.353 5 H 0.470 0.530 6 N -0.250 5.250 7 C -0.021 4.021 8 C 0.593 3.407 9 O -0.552 6.552 10 N -0.705 5.705 11 C 0.140 3.860 12 C -0.103 4.103 13 C -0.154 4.154 14 C 0.144 3.856 15 N -0.720 5.720 16 C -0.241 4.241 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.269 1.269 24 C -0.132 4.132 25 C -0.128 4.128 26 Cl -0.015 7.015 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.411 0.589 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.058 0.942 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -27.283 6.781 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.073 4.073 4 N -0.071 5.071 5 H 0.320 0.680 6 N -0.087 5.087 7 C -0.182 4.182 8 C 0.377 3.623 9 O -0.428 6.428 10 N -0.356 5.356 11 C 0.017 3.983 12 C -0.122 4.122 13 C -0.194 4.194 14 C 0.034 3.966 15 N -0.358 5.358 16 C -0.373 4.373 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.194 1.194 24 C -0.171 4.171 25 C -0.166 4.166 26 Cl 0.014 6.986 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.247 0.753 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.395 -26.579 6.823 28.696 hybrid contribution 0.048 0.275 -0.950 0.991 sum -8.348 -26.304 5.873 28.215 Atomic orbital electron populations 1.21775 0.93128 1.03648 1.02137 1.20398 0.97013 0.85640 1.06296 1.21662 1.02659 0.97726 0.85203 1.43345 1.45681 1.07356 1.10758 0.68002 1.73640 1.17825 1.04055 1.13142 1.21766 1.09683 0.96354 0.90385 1.17042 0.77224 0.81731 0.86265 1.90801 1.54832 1.83270 1.13901 1.45876 1.65274 1.12659 1.11816 1.21405 1.00362 0.83088 0.93413 1.22493 0.96730 0.94705 0.98292 1.23748 0.95526 0.99396 1.00779 1.21426 0.96785 0.91521 0.86849 1.42314 1.08547 1.61754 1.23190 1.19680 0.90912 1.24407 1.02296 0.90524 1.25562 0.98719 1.02987 0.99633 1.69816 1.19918 1.49605 1.22689 0.85142 0.78558 0.77576 0.78505 1.21481 1.22307 1.19416 1.23338 0.98315 0.95700 0.99768 1.20688 1.12506 0.94723 0.88666 1.98347 1.94347 1.92826 1.13125 0.93467 0.89481 0.92253 0.88324 0.86789 0.75282 0.91275 0.90777 0.90304 0.88973 0.93571 0.92037 0.79393 0.94049 0.92278 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.23 16 2 C -0.05 -0.35 6.36 29.85 0.19 -0.16 16 3 C 0.06 0.78 6.51 41.33 0.27 1.05 16 4 N -0.35 -4.64 6.86 -47.55 -0.33 -4.97 16 5 H 0.47 2.19 8.96 -219.99 -1.97 0.22 16 6 N -0.25 -5.32 11.91 -48.17 -0.57 -5.90 16 7 C -0.02 -0.54 7.13 42.45 0.30 -0.23 16 8 C 0.59 17.60 7.82 86.73 0.68 18.27 16 9 O -0.55 -19.06 15.87 -3.95 -0.06 -19.13 16 10 N -0.71 -19.12 5.55 -466.15 -2.59 -21.71 16 11 C 0.14 3.75 5.50 86.38 0.47 4.23 16 12 C -0.10 -3.08 3.62 -10.27 -0.04 -3.12 16 13 C -0.15 -5.06 7.44 31.18 0.23 -4.83 16 14 C 0.14 5.57 4.57 45.58 0.21 5.78 16 15 N -0.72 -36.00 5.31 -320.15 -1.70 -37.70 16 16 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 17 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 19 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 20 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.13 -4.09 7.39 31.12 0.23 -3.86 16 25 C -0.13 -2.82 6.79 22.44 0.15 -2.67 16 26 Cl -0.01 -0.34 28.02 -2.72 -0.08 -0.42 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.41 10.61 8.19 -92.71 -0.76 9.85 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 1.95 7.87 -2.39 -0.02 1.93 16 35 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.09 2.61 7.92 -2.39 -0.02 2.59 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 39 H 0.37 20.05 7.90 -92.71 -0.73 19.32 16 40 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.11 2.73 8.10 -2.39 -0.02 2.71 16 Total: -1.00 -72.76 372.41 -0.69 -73.45 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -2.39 Total: 29.41 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.72 Total: -2.23 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -4.90 Total: -129.19 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -72.76 -0.69 -73.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091072410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.247 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds