Wall clock time and date at job start Sat Apr 11 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35459 * 126.43194 * 2 1 4 4 Cl 1.73601 * 127.24127 * 0.22121 * 3 2 1 5 5 C 1.41555 * 105.52058 * 179.97438 * 3 2 1 6 6 C 1.47669 * 126.45917 * 179.97438 * 5 3 2 7 7 O 1.21573 * 120.00193 * 0.02562 * 6 5 3 8 8 N 1.34778 * 119.99408 * 179.97438 * 6 5 3 9 9 C 1.46505 * 119.99625 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46891 * 180.02562 * 9 8 6 11 11 C 1.53784 * 113.61385 * 274.13312 * 10 9 8 12 12 C 1.53954 * 87.01995 * 220.05370 * 11 10 9 13 13 N 1.46504 * 113.53656 * 270.81160 * 12 11 10 14 14 C 1.36940 * 119.99961 * 252.49940 * 13 12 11 15 15 H 1.07998 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00294 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00101 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46979 * 89.99780 * 18 16 14 20 20 H 1.48501 * 109.47426 * 209.99770 * 18 16 14 21 21 H 1.48501 * 109.47013 * 329.99996 * 18 16 14 22 22 C 1.53770 * 87.11382 * 25.36239 * 12 11 10 23 23 N 1.31824 * 107.07649 * 0.02562 * 5 3 2 24 24 N 1.28472 * 110.13726 * 359.97438 * 23 5 3 25 25 C 1.46497 * 124.93547 * 180.02562 * 24 23 5 26 26 H 1.09000 * 109.47361 * 90.01869 * 1 2 3 27 27 H 1.09000 * 109.47202 * 210.02446 * 1 2 3 28 28 H 1.09001 * 109.47177 * 330.02322 * 1 2 3 29 29 H 0.96997 * 120.00218 * 0.02562 * 8 6 5 30 30 H 1.09004 * 109.47274 * 300.00340 * 9 8 6 31 31 H 1.08997 * 109.47077 * 59.99784 * 9 8 6 32 32 H 1.08998 * 112.85284 * 45.33503 * 10 9 8 33 33 H 1.09005 * 113.61401 * 334.57312 * 11 10 9 34 34 H 1.09001 * 113.61191 * 105.47086 * 11 10 9 35 35 H 1.09000 * 113.74524 * 139.94684 * 12 11 10 36 36 H 0.96997 * 119.99727 * 72.49133 * 13 12 11 37 37 H 0.96996 * 120.00500 * 180.02562 * 17 16 14 38 38 H 1.08999 * 113.61688 * 220.09199 * 22 12 11 39 39 H 1.08998 * 113.61637 * 89.18975 * 22 12 11 40 40 H 1.08999 * 109.47357 * 89.97988 * 25 24 23 41 41 H 1.08999 * 109.47042 * 209.98173 * 25 24 23 42 42 H 1.08999 * 109.47138 * 329.97883 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3114 1.0899 0.0000 4 17 1.8234 2.7559 0.0053 5 6 3.6337 0.5846 0.0006 6 6 4.8774 1.3808 0.0003 7 8 4.8216 2.5953 -0.0001 8 7 6.0742 0.7611 0.0015 9 6 7.3081 1.5510 0.0018 10 6 8.5153 0.6111 0.0025 11 6 8.9384 0.1529 1.4082 12 6 10.3944 0.3197 0.9368 13 7 10.9520 -0.8874 0.3215 14 6 11.8887 -1.6276 0.9922 15 1 12.2168 -1.3214 1.9745 16 6 12.4166 -2.7715 0.4094 17 7 13.3173 -3.4828 1.0537 18 14 11.8487 -3.3016 -1.2894 19 1 12.7172 -2.6765 -2.3191 20 1 11.9340 -4.7799 -1.4011 21 1 10.4434 -2.8696 -1.4987 22 6 9.8654 1.3424 -0.0824 23 7 3.5456 -0.7307 0.0004 24 7 2.3125 -1.0913 0.0002 25 6 1.8444 -2.4795 0.0005 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 6.1186 -0.2079 0.0022 30 1 7.3376 2.1791 -0.8886 31 1 7.3364 2.1802 0.8913 32 1 8.4158 -0.2063 -0.7116 33 1 8.6529 0.8476 2.1983 34 1 8.6661 -0.8786 1.6316 35 1 11.0525 0.7536 1.6895 36 1 10.6575 -1.1622 -0.5609 37 1 13.6865 -4.2819 0.6464 38 1 10.3405 1.2698 -1.0607 39 1 9.8340 2.3629 0.2992 40 1 1.7285 -2.8237 1.0282 41 1 0.8850 -2.5395 -0.5133 42 1 2.5716 -3.1082 -0.5134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091263261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:53 Heat of formation + Delta-G solvation = 70.015652 kcal Electronic energy + Delta-G solvation = -24646.594939 eV Core-core repulsion = 20883.542133 eV Total energy + Delta-G solvation = -3763.052806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.11408 -39.61714 -38.49848 -36.73751 -34.70500 -34.01281 -33.17515 -32.91870 -30.68276 -28.56811 -27.72915 -26.81401 -25.14530 -23.84908 -22.92140 -21.63755 -21.40317 -19.99892 -18.55398 -17.76442 -17.55020 -16.96180 -16.81225 -15.89306 -15.30020 -15.15866 -14.87898 -14.44788 -14.23145 -13.91577 -13.82724 -13.57446 -13.52830 -13.28235 -13.07294 -12.84911 -12.71719 -12.46534 -12.09245 -12.01927 -11.73529 -11.54633 -11.34228 -10.92197 -10.88922 -10.48533 -10.31233 -10.16225 -9.90742 -9.65546 -9.56345 -9.51537 -9.07385 -8.95756 -8.89398 -7.29934 -5.79914 -3.15844 1.19863 1.49289 1.58233 2.34650 3.10855 3.24895 3.34682 3.37736 3.42852 3.94032 4.05313 4.39995 4.53105 4.55874 4.57344 4.82705 4.90377 4.94114 4.98850 4.99143 5.13263 5.20089 5.28101 5.40410 5.45733 5.55371 5.64495 5.78497 5.89966 5.95554 6.15802 6.19430 6.26132 6.38169 6.51923 6.65736 6.76984 6.92154 7.28710 7.58162 7.98415 8.16329 8.39913 9.17873 9.90177 10.09632 11.38261 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.002568 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.711334 B =10901.700336 C =12098.074477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.024 3.976 3 C -0.104 4.104 4 Cl -0.009 7.009 5 C 0.002 3.998 6 C 0.597 3.403 7 O -0.521 6.521 8 N -0.711 5.711 9 C 0.132 3.868 10 C -0.124 4.124 11 C -0.167 4.167 12 C 0.172 3.828 13 N -0.730 5.730 14 C -0.245 4.245 15 H 0.092 0.908 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.148 4.148 23 N -0.245 5.245 24 N -0.277 5.277 25 C 0.085 3.915 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.407 0.593 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.926 6.057 -3.232 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.142 4.142 4 Cl 0.020 6.980 5 C -0.159 4.159 6 C 0.380 3.620 7 O -0.395 6.395 8 N -0.362 5.362 9 C 0.009 3.991 10 C -0.142 4.142 11 C -0.207 4.207 12 C 0.061 3.939 13 N -0.370 5.370 14 C -0.375 4.375 15 H 0.110 0.890 16 C -0.191 4.191 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.187 4.187 23 N -0.080 5.080 24 N -0.066 5.066 25 C -0.054 4.054 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.242 0.758 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -29.163 5.868 -3.062 29.905 hybrid contribution -0.916 -0.365 -1.233 1.578 sum -30.079 5.503 -4.295 30.878 Atomic orbital electron populations 1.20408 0.85743 1.04433 1.03795 1.21123 0.95475 0.85740 1.07778 1.20508 0.92020 0.87752 1.13870 1.98356 1.90796 1.11733 1.97107 1.21892 0.94355 0.89449 1.10202 1.16769 0.81564 0.86443 0.77175 1.90831 1.86553 1.12395 1.49754 1.45895 1.05184 1.11128 1.73983 1.21518 0.81691 0.93765 1.02126 1.22756 0.93079 0.98468 0.99945 1.23885 1.01045 1.01282 0.94527 1.21044 0.91848 0.87125 0.93903 1.42524 1.48643 1.26963 1.18899 1.19120 1.13351 1.03832 1.01202 0.89017 1.24679 0.98752 0.97628 0.98040 1.69696 1.31851 1.18384 1.38072 0.86562 0.78361 0.77917 0.85747 1.21013 1.21708 1.20364 1.23452 0.94918 0.99060 1.01293 1.73660 1.01904 1.13731 1.18722 1.45304 1.02580 1.07502 1.51255 1.22270 1.01913 0.76291 1.04973 0.89786 0.90540 0.89160 0.75766 0.91506 0.91104 0.89215 0.90903 0.91345 0.91032 0.80524 0.93009 0.91410 0.89910 0.89187 0.88362 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 9.75 36.00 0.35 -0.03 16 2 C 0.02 0.21 6.94 -81.90 -0.57 -0.36 16 3 C -0.10 -1.24 6.79 -39.31 -0.27 -1.50 16 4 Cl -0.01 -0.10 27.92 -51.86 -1.45 -1.55 16 5 C 0.00 0.03 7.13 -82.76 -0.59 -0.56 16 6 C 0.60 8.89 7.82 -12.41 -0.10 8.80 16 7 O -0.52 -8.96 15.87 5.30 0.08 -8.88 16 8 N -0.71 -9.60 5.55 -61.31 -0.34 -9.94 16 9 C 0.13 1.77 5.50 -4.04 -0.02 1.75 16 10 C -0.12 -1.79 3.62 -89.81 -0.33 -2.12 16 11 C -0.17 -2.70 7.44 -25.83 -0.19 -2.90 16 12 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 13 N -0.73 -16.99 5.11 -52.55 -0.27 -17.25 16 14 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 16 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 17 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 18 Si 0.88 21.89 27.73 -169.99 -4.71 17.18 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 22 C -0.15 -2.23 7.39 -25.92 -0.19 -2.42 16 23 N -0.24 -2.90 11.66 33.42 0.39 -2.51 16 24 N -0.28 -2.41 3.72 -63.69 -0.24 -2.65 16 25 C 0.09 0.32 10.94 59.85 0.65 0.97 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.17 7.68 -51.93 -0.40 -0.23 16 28 H 0.09 0.40 8.03 -51.93 -0.42 -0.02 16 29 H 0.41 5.17 8.19 -40.82 -0.33 4.84 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.36 8.26 5.76 -40.82 -0.24 8.03 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.10 0.09 7.58 -51.93 -0.39 -0.30 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -35.07 368.71 -8.00 -43.07 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.99 Total: 7.73 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.81 Total: -2.40 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.32 Total: -60.70 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.45 Total: -1.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.07 -8.00 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091263261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.082 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds