Wall clock time and date at job start Sat Apr 11 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48504 * 109.47076 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46777 * 239.99892 * 3 2 1 6 6 H 1.48495 * 109.47607 * 119.99850 * 3 2 1 7 7 C 1.38805 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99769 * 149.72876 * 7 2 1 9 9 N 1.36936 * 120.00474 * 329.73612 * 7 2 1 10 10 C 1.50244 * 130.83599 * 346.56252 * 9 7 2 11 11 H 1.09001 * 115.85834 * 0.39125 * 10 9 7 12 12 C 1.55842 * 101.05160 * 234.00652 * 10 9 7 13 13 C 1.54224 * 103.56106 * 327.14926 * 12 10 9 14 14 C 1.50237 * 130.84073 * 166.90243 * 9 7 2 15 15 H 1.08993 * 115.85786 * 359.60512 * 14 9 7 16 16 C 1.55844 * 101.04785 * 233.92740 * 14 9 7 17 17 H 1.09010 * 110.62223 * 85.71547 * 16 14 9 18 18 N 1.46501 * 110.62725 * 208.57141 * 16 14 9 19 19 C 1.34775 * 120.00182 * 274.56641 * 18 16 14 20 20 O 1.21634 * 119.99859 * 4.83967 * 19 18 16 21 21 C 1.47162 * 120.00247 * 184.83760 * 19 18 16 22 22 C 1.38406 * 126.88430 * 354.30308 * 21 19 18 23 23 C 1.39670 * 105.36025 * 179.97438 * 22 21 19 24 24 N 1.30863 * 107.86083 * 359.97438 * 23 22 21 25 25 N 1.28447 * 110.92815 * 359.71651 * 24 23 22 26 26 C 1.46503 * 125.19009 * 180.27999 * 25 24 23 27 27 F 1.39903 * 109.47134 * 10.75351 * 26 25 24 28 28 F 1.39896 * 109.46934 * 130.75507 * 26 25 24 29 29 C 1.54850 * 103.44799 * 327.06437 * 16 14 9 30 30 H 0.96997 * 119.99628 * 176.08719 * 1 2 3 31 31 H 1.08998 * 110.62853 * 85.54551 * 12 10 9 32 32 H 1.09001 * 110.62933 * 208.41307 * 12 10 9 33 33 H 1.09005 * 110.63876 * 241.43251 * 13 12 10 34 34 H 1.09002 * 110.49752 * 118.49766 * 13 12 10 35 35 H 0.97000 * 120.00050 * 94.56876 * 18 16 14 36 36 H 1.08004 * 127.31893 * 0.02562 * 22 21 19 37 37 H 1.07997 * 126.06938 * 180.02562 * 23 22 21 38 38 H 1.08996 * 109.46773 * 250.75490 * 26 25 24 39 39 H 1.09001 * 110.62323 * 118.49289 * 29 16 14 40 40 H 1.09000 * 110.62352 * 241.50629 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 2.9799 -1.2660 -0.4709 9 7 1.4657 -2.3070 0.5987 10 6 0.2980 -2.4425 1.5343 11 1 -0.2189 -1.5166 1.7868 12 6 0.9545 -3.2078 2.7226 13 6 2.0115 -4.0989 2.0389 14 6 1.8560 -3.7560 0.5267 15 1 2.7112 -3.9869 -0.1083 16 6 0.5062 -4.4080 0.1003 17 1 0.3933 -4.3832 -0.9837 18 7 0.4186 -5.7840 0.5953 19 6 0.9574 -6.7925 -0.1182 20 8 1.5923 -6.5519 -1.1275 21 6 0.7777 -8.1846 0.3237 22 6 0.1822 -8.6134 1.4972 23 6 0.2517 -10.0078 1.4594 24 7 0.8440 -10.3500 0.3438 25 7 1.1587 -9.3128 -0.3455 26 6 1.8284 -9.3362 -1.6483 27 9 1.8520 -10.6469 -2.1370 28 9 1.1337 -8.5168 -2.5444 29 6 -0.5574 -3.5137 0.7836 30 1 -0.4849 -0.8381 -0.0573 31 1 1.4312 -2.5108 3.4118 32 1 0.2147 -3.8156 3.2435 33 1 1.7989 -5.1530 2.2175 34 1 3.0112 -3.8429 2.3899 35 1 -0.0272 -5.9693 1.4366 36 1 -0.2461 -8.0000 2.2762 37 1 -0.1185 -10.6837 2.2161 38 1 2.8494 -8.9710 -1.5385 39 1 -1.1991 -3.0430 0.0387 40 1 -1.1500 -4.0940 1.4907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095468447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:00 Heat of formation + Delta-G solvation = 9.026635 kcal Electronic energy + Delta-G solvation = -28551.103470 eV Core-core repulsion = 24233.609301 eV Total energy + Delta-G solvation = -4317.494169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.52392 -47.61467 -42.81867 -40.17702 -38.45442 -34.41324 -33.05504 -32.62354 -31.32771 -29.44265 -29.11938 -27.71465 -26.53435 -24.27132 -23.36069 -22.16609 -21.44075 -20.72971 -19.79847 -19.14906 -18.50741 -18.41150 -17.59330 -17.49662 -16.84739 -15.89509 -15.78525 -15.23480 -14.86506 -14.66710 -14.58662 -14.32323 -14.06380 -13.85807 -13.70574 -13.59813 -13.34388 -13.00141 -12.53168 -12.45926 -12.02513 -11.82462 -11.38581 -11.23188 -11.15489 -10.80003 -10.60337 -10.36852 -10.18492 -10.09064 -9.94232 -9.83685 -9.69786 -9.52084 -9.50028 -8.81859 -8.51064 -7.09540 -6.22627 -3.14588 0.84936 1.46439 2.22251 2.96713 3.07534 3.29338 3.48176 3.52066 3.69544 3.73148 4.20785 4.34608 4.52032 4.61829 4.75239 4.92938 5.14348 5.20588 5.27159 5.33583 5.50328 5.65501 5.70311 5.80120 5.86447 5.94513 5.98606 6.05516 6.09587 6.26276 6.34838 6.41305 6.58625 6.63851 6.73484 6.92555 7.06468 7.42032 7.50157 7.58267 8.10822 8.35558 8.87514 9.70794 10.38751 11.16574 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.023638 B = 0.003235 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.257516 B = 8652.235852 C = 9305.488475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.024 4.024 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.327 4.327 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.142 3.858 11 H 0.109 0.891 12 C -0.132 4.132 13 C -0.128 4.128 14 C 0.132 3.868 15 H 0.090 0.910 16 C 0.129 3.871 17 H 0.087 0.913 18 N -0.691 5.691 19 C 0.578 3.422 20 O -0.531 6.531 21 C -0.010 4.010 22 C -0.179 4.179 23 C 0.017 3.983 24 N -0.267 5.267 25 N -0.330 5.330 26 C 0.508 3.492 27 F -0.170 7.170 28 F -0.160 7.160 29 C -0.137 4.137 30 H 0.268 0.732 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.398 0.602 36 H 0.169 0.831 37 H 0.194 0.806 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 -18.595 5.066 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.454 4.454 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.035 3.965 11 H 0.127 0.873 12 C -0.171 4.171 13 C -0.168 4.168 14 C 0.023 3.977 15 H 0.108 0.892 16 C 0.023 3.977 17 H 0.105 0.895 18 N -0.342 5.342 19 C 0.362 3.638 20 O -0.407 6.407 21 C -0.136 4.136 22 C -0.208 4.208 23 C -0.162 4.162 24 N -0.096 5.096 25 N -0.127 5.127 26 C 0.376 3.624 27 F -0.151 7.151 28 F -0.141 7.141 29 C -0.177 4.177 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.233 0.767 36 H 0.186 0.814 37 H 0.211 0.789 38 H 0.179 0.821 39 H 0.090 0.910 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.535 -17.448 3.388 17.782 hybrid contribution -0.449 -1.324 0.667 1.549 sum 0.086 -18.772 4.055 19.206 Atomic orbital electron populations 1.70813 1.06642 1.29997 1.47962 1.25692 0.96355 1.00834 0.99718 0.83534 0.74911 0.76065 0.76219 1.21085 1.22027 1.22146 1.19719 1.01148 0.87910 1.36594 0.91322 1.46589 1.34085 1.00483 1.50123 1.23102 0.89070 0.95367 0.88968 0.87288 1.22823 0.97825 0.98344 0.98139 1.22795 0.98913 0.97596 0.97485 1.23217 0.94553 0.85694 0.94267 0.89234 1.22793 0.98809 0.77156 0.98933 0.89535 1.45959 1.56906 1.07071 1.24252 1.16882 0.80464 0.82615 0.83872 1.90874 1.40155 1.84499 1.25210 1.21701 1.06719 0.89471 0.95738 1.22416 1.04503 0.95820 0.98032 1.23772 1.01425 0.94913 0.96114 1.73273 1.16391 1.13325 1.06617 1.46985 1.45306 1.03797 1.16631 1.21457 0.93324 0.74690 0.72977 1.93121 1.96980 1.37807 1.87193 1.93213 1.81972 1.72015 1.66923 1.23323 0.96803 0.97760 0.99853 0.92086 0.92383 0.92991 0.92793 0.92636 0.76663 0.81387 0.78885 0.82107 0.90964 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.41 12.64 55.49 0.70 -25.71 16 2 C -0.02 -0.68 5.24 -17.43 -0.09 -0.77 16 3 Si 1.06 24.85 30.01 -169.99 -5.10 19.75 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.33 -8.95 10.33 -15.06 -0.16 -9.11 16 8 H 0.07 1.91 7.99 -52.49 -0.42 1.49 16 9 N -0.59 -14.10 2.85 -145.55 -0.41 -14.51 16 10 C 0.14 2.93 3.90 -62.55 -0.24 2.68 16 11 H 0.11 2.54 6.69 -51.93 -0.35 2.19 16 12 C -0.13 -2.23 6.41 -24.57 -0.16 -2.39 16 13 C -0.13 -2.14 6.29 -24.57 -0.15 -2.29 16 14 C 0.13 2.61 5.35 -62.80 -0.34 2.27 16 15 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 16 C 0.13 2.24 3.03 -65.44 -0.20 2.04 16 17 H 0.09 1.74 7.79 -51.92 -0.40 1.34 16 18 N -0.69 -9.28 3.62 -52.55 -0.19 -9.47 16 19 C 0.58 8.36 7.68 -12.64 -0.10 8.26 16 20 O -0.53 -9.34 14.04 5.25 0.07 -9.26 16 21 C -0.01 -0.12 6.84 -82.06 -0.56 -0.69 16 22 C -0.18 -1.64 10.50 -38.98 -0.41 -2.05 16 23 C 0.02 0.15 12.03 -17.43 -0.21 -0.06 16 24 N -0.27 -3.18 11.51 30.59 0.35 -2.83 16 25 N -0.33 -4.12 3.71 -62.39 -0.23 -4.35 16 26 C 0.51 5.85 5.75 59.85 0.34 6.20 16 27 F -0.17 -1.96 17.10 2.25 0.04 -1.92 16 28 F -0.16 -2.26 15.32 2.25 0.03 -2.22 16 29 C -0.14 -2.38 6.14 -23.99 -0.15 -2.53 16 30 H 0.27 7.63 6.35 -40.82 -0.26 7.37 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 33 H 0.05 0.75 6.49 -51.93 -0.34 0.41 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.15 7.06 -40.82 -0.29 3.86 16 36 H 0.17 1.00 7.59 -52.48 -0.40 0.60 16 37 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.16 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.37 7.88 -51.93 -0.41 0.97 16 40 H 0.06 0.84 7.35 -51.93 -0.38 0.46 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -32.90 335.24 -6.66 -39.56 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.56 Total: 4.33 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.42 Total: 1.58 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.22 Total: -56.87 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.07 Total: -4.14 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.75 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.90 -6.66 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095468447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.590 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds