Wall clock time and date at job start Sat Apr 11 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47238 * 240.00490 * 3 2 1 5 5 H 1.48505 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47240 * 120.00533 * 3 2 1 7 7 C 1.38811 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.84289 * 0.02562 * 9 7 2 11 11 H 1.08997 * 115.85365 * 0.34486 * 10 9 7 12 12 C 1.55838 * 101.05567 * 234.66860 * 10 9 7 13 13 C 1.55877 * 102.97213 * 326.18440 * 12 10 9 14 14 C 1.50241 * 130.83880 * 180.02562 * 9 7 2 15 15 H 1.09008 * 115.85682 * 0.37280 * 14 9 7 16 16 C 1.55845 * 101.05200 * 234.69730 * 14 9 7 17 17 H 1.08997 * 110.62493 * 85.55075 * 16 14 9 18 18 N 1.46499 * 110.62754 * 208.57135 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.01646 * 18 16 14 20 20 O 1.21605 * 119.99989 * 359.97438 * 19 18 16 21 21 C 1.47425 * 120.00022 * 180.02562 * 19 18 16 22 22 C 1.41293 * 126.41216 * 0.02562 * 21 19 18 23 23 N 1.30450 * 108.02192 * 179.97438 * 22 21 19 24 24 N 1.39936 * 108.89549 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.75049 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.46908 * 120.02794 * 25 24 23 27 27 F 1.39899 * 109.47030 * 240.02308 * 25 24 23 28 28 C 1.34259 * 108.49325 * 359.75574 * 24 23 22 29 29 C 1.55846 * 101.04830 * 126.01735 * 10 9 7 30 30 H 0.96991 * 120.00607 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.62978 * 85.54683 * 12 10 9 32 32 H 1.08999 * 110.62972 * 208.57058 * 12 10 9 33 33 H 1.08994 * 111.10226 * 242.11418 * 13 12 10 34 34 H 1.09003 * 110.07128 * 119.15259 * 13 12 10 35 35 H 0.96993 * 120.00088 * 94.01459 * 18 16 14 36 36 H 1.07998 * 125.99170 * 359.94711 * 22 21 19 37 37 H 1.08996 * 109.47404 * 0.02589 * 25 24 23 38 38 H 1.07998 * 126.29472 * 180.24703 * 28 24 23 39 39 H 1.08996 * 110.62170 * 151.43519 * 29 10 9 40 40 H 1.09004 * 110.62487 * 274.29301 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1498 -2.6707 -0.0005 11 1 -0.8012 -1.7968 -0.0064 12 6 -0.2769 -3.5956 1.2472 13 6 1.0672 -4.3850 1.2360 14 6 1.8189 -3.8071 -0.0005 15 1 2.9016 -3.9342 0.0058 16 6 1.0821 -4.3795 -1.2488 17 1 1.6508 -4.1775 -2.1565 18 7 0.8465 -5.8172 -1.0949 19 6 1.8005 -6.6987 -1.4547 20 8 2.8565 -6.3006 -1.9075 21 6 1.5632 -8.1455 -1.3003 22 6 0.3931 -8.7542 -0.7937 23 7 0.5683 -10.0467 -0.8162 24 7 1.8399 -10.3227 -1.3312 25 6 2.4165 -11.6564 -1.5185 26 9 2.7161 -11.8490 -2.8715 27 9 3.5873 -11.7689 -0.7611 28 6 2.4400 -9.1595 -1.6301 29 6 -0.2739 -3.6102 -1.2377 30 1 -0.4850 0.8399 0.0004 31 1 -0.3863 -3.0027 2.1552 32 1 -1.1156 -4.2823 1.1324 33 1 0.8933 -5.4541 1.1146 34 1 1.6249 -4.1871 2.1513 35 1 0.0041 -6.1347 -0.7340 36 1 -0.4913 -8.2396 -0.4480 37 1 1.6999 -12.4109 -1.1941 38 1 3.4282 -9.0390 -2.0488 39 1 -1.1129 -4.2955 -1.1168 40 1 -0.3841 -3.0279 -2.1526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096246236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:07 Heat of formation + Delta-G solvation = 4.078591 kcal Electronic energy + Delta-G solvation = -27656.737077 eV Core-core repulsion = 23339.028345 eV Total energy + Delta-G solvation = -4317.708732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.85949 -47.95675 -41.69475 -39.73898 -38.04897 -34.00895 -33.14415 -32.25593 -30.80874 -29.22296 -28.98475 -27.78077 -26.44655 -24.24885 -23.05056 -21.94389 -21.23316 -20.43091 -19.54348 -18.95077 -18.53162 -18.33184 -18.00476 -17.07313 -16.47874 -15.72545 -15.37219 -15.20226 -14.89790 -14.76543 -14.57456 -14.28268 -14.09210 -14.02476 -13.77991 -13.63056 -13.21708 -12.71456 -12.30532 -12.22635 -11.74045 -11.64179 -11.43474 -11.04514 -10.89049 -10.88176 -10.80952 -10.38341 -10.18883 -10.09050 -9.83945 -9.69572 -9.39233 -9.25224 -9.23670 -8.92029 -8.47227 -6.89564 -5.71000 -3.08836 1.03227 1.23749 1.83877 2.96498 3.37081 3.42240 3.45943 3.47222 3.50937 3.67185 4.06602 4.20719 4.37955 4.47954 4.83963 4.95591 5.22380 5.34331 5.40980 5.57751 5.81933 5.85625 5.89309 5.95543 6.05994 6.09694 6.14204 6.32386 6.35236 6.55525 6.61664 6.69511 6.82397 6.93717 6.99342 7.02218 7.28901 7.53775 7.75966 7.86617 8.18682 8.51227 9.12247 9.74833 10.55302 11.38532 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.002597 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.013478 B =10780.250775 C =11131.511181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.209 4.209 8 H 0.078 0.922 9 N -0.590 5.590 10 C 0.152 3.848 11 H 0.154 0.846 12 C -0.135 4.135 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.084 0.916 16 C 0.130 3.870 17 H 0.085 0.915 18 N -0.705 5.705 19 C 0.586 3.414 20 O -0.546 6.546 21 C -0.268 4.268 22 C 0.102 3.898 23 N -0.281 5.281 24 N -0.429 5.429 25 C 0.504 3.496 26 F -0.179 7.179 27 F -0.178 7.178 28 C 0.139 3.861 29 C -0.139 4.139 30 H 0.254 0.746 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.394 0.606 36 H 0.201 0.799 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.055 0.945 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 -23.038 -1.734 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.337 4.337 8 H 0.096 0.904 9 N -0.311 5.311 10 C 0.046 3.954 11 H 0.170 0.830 12 C -0.175 4.175 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.102 0.898 16 C 0.025 3.975 17 H 0.103 0.897 18 N -0.355 5.355 19 C 0.372 3.628 20 O -0.425 6.425 21 C -0.282 4.282 22 C -0.089 4.089 23 N -0.098 5.098 24 N -0.219 5.219 25 C 0.369 3.631 26 F -0.160 7.160 27 F -0.160 7.160 28 C -0.007 4.007 29 C -0.179 4.179 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.228 0.772 36 H 0.217 0.783 37 H 0.186 0.814 38 H 0.210 0.790 39 H 0.074 0.926 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.064 -23.672 -1.846 23.768 hybrid contribution 0.654 1.338 -0.046 1.490 sum -0.409 -22.334 -1.892 22.417 Atomic orbital electron populations 1.69419 1.04973 1.25066 1.57828 1.24685 0.95640 0.97466 1.02950 0.86112 0.78375 0.82900 0.77894 1.21217 1.21607 1.21294 1.19022 0.90358 0.81899 1.42465 0.90374 1.46477 1.01579 0.98815 1.84234 1.23748 0.87729 0.95306 0.88634 0.82959 1.23202 0.95039 0.98009 1.01239 1.23070 0.97617 0.97482 0.98817 1.23190 0.96297 0.86100 0.92526 0.89766 1.22879 0.98066 0.76324 1.00280 0.89699 1.46022 1.17897 1.07202 1.64399 1.17140 0.84029 0.83799 0.77813 1.90794 1.25619 1.79915 1.46122 1.20583 0.96632 0.94914 1.16104 1.24315 0.98430 0.90506 0.95619 1.77201 0.95017 1.17298 1.20322 1.49612 1.14291 1.05817 1.52136 1.20973 0.83305 0.84425 0.74370 1.93156 1.94209 1.94358 1.34309 1.93158 1.51696 1.95394 1.75725 1.23120 0.99063 0.84327 0.94179 1.23462 0.93716 0.98437 1.02294 0.93539 0.92517 0.93737 0.92971 0.93175 0.77207 0.78266 0.81439 0.79031 0.92640 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.01 10.47 55.49 0.58 -25.43 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.92 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.21 -5.75 10.59 -15.06 -0.16 -5.91 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.59 -14.55 2.97 -145.83 -0.43 -14.98 16 10 C 0.15 3.35 4.67 -62.80 -0.29 3.06 16 11 H 0.15 3.85 5.52 -51.93 -0.29 3.57 16 12 C -0.14 -2.54 6.53 -23.68 -0.15 -2.70 16 13 C -0.13 -2.36 6.36 -23.69 -0.15 -2.51 16 14 C 0.13 2.65 5.29 -62.81 -0.33 2.32 16 15 H 0.08 1.84 8.14 -51.92 -0.42 1.41 16 16 C 0.13 2.37 3.17 -64.86 -0.21 2.16 16 17 H 0.08 1.75 7.70 -51.93 -0.40 1.35 16 18 N -0.71 -9.99 3.66 -51.92 -0.19 -10.18 16 19 C 0.59 8.83 7.81 -12.52 -0.10 8.74 16 20 O -0.55 -10.41 16.63 5.27 0.09 -10.32 16 21 C -0.27 -3.18 6.13 -105.07 -0.64 -3.82 16 22 C 0.10 0.96 11.50 -16.98 -0.20 0.77 16 23 N -0.28 -2.79 12.50 30.86 0.39 -2.40 16 24 N -0.43 -4.03 3.84 -66.09 -0.25 -4.28 16 25 C 0.50 3.21 6.37 59.85 0.38 3.59 16 26 F -0.18 -1.33 17.47 2.25 0.04 -1.29 16 27 F -0.18 -1.35 17.47 2.25 0.04 -1.31 16 28 C 0.14 1.50 11.19 -16.56 -0.19 1.32 16 29 C -0.14 -2.55 6.22 -23.66 -0.15 -2.69 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.39 4.36 6.98 -40.82 -0.28 4.08 16 36 H 0.20 1.21 7.50 -52.49 -0.39 0.82 16 37 H 0.17 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.06 0.83 7.38 -51.93 -0.38 0.44 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -32.83 341.60 -6.48 -39.31 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.58 Total: 4.91 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.28 Total: 3.89 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.09 Total: -57.28 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.08 Total: -2.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.83 -6.48 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096246236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.393 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds