Wall clock time and date at job start Sat Apr 11 2020 01:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47238 * 240.00490 * 3 2 1 5 5 H 1.48505 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47240 * 120.00533 * 3 2 1 7 7 C 1.38811 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.84289 * 0.02562 * 9 7 2 11 11 H 1.08997 * 115.85365 * 0.34486 * 10 9 7 12 12 C 1.55838 * 101.05567 * 234.66860 * 10 9 7 13 13 C 1.55877 * 102.97213 * 326.18440 * 12 10 9 14 14 C 1.50241 * 130.83880 * 180.02562 * 9 7 2 15 15 H 1.09008 * 115.85682 * 0.37280 * 14 9 7 16 16 C 1.55845 * 101.05200 * 234.69730 * 14 9 7 17 17 H 1.08997 * 110.62493 * 85.55075 * 16 14 9 18 18 N 1.46499 * 110.62754 * 208.57135 * 16 14 9 19 19 C 1.34778 * 119.99921 * 274.01646 * 18 16 14 20 20 O 1.21605 * 119.99989 * 359.97438 * 19 18 16 21 21 C 1.47425 * 120.00022 * 180.02562 * 19 18 16 22 22 C 1.41293 * 126.41216 * 0.02562 * 21 19 18 23 23 N 1.30450 * 108.02192 * 179.97438 * 22 21 19 24 24 N 1.39936 * 108.89549 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.75049 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.46908 * 120.02794 * 25 24 23 27 27 F 1.39899 * 109.47030 * 240.02308 * 25 24 23 28 28 C 1.34259 * 108.49325 * 359.75574 * 24 23 22 29 29 C 1.55846 * 101.04830 * 126.01735 * 10 9 7 30 30 H 0.96991 * 120.00607 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.62978 * 85.54683 * 12 10 9 32 32 H 1.08999 * 110.62972 * 208.57058 * 12 10 9 33 33 H 1.08994 * 111.10226 * 242.11418 * 13 12 10 34 34 H 1.09003 * 110.07128 * 119.15259 * 13 12 10 35 35 H 0.96993 * 120.00088 * 94.01459 * 18 16 14 36 36 H 1.07998 * 125.99170 * 359.94711 * 22 21 19 37 37 H 1.08996 * 109.47404 * 0.02589 * 25 24 23 38 38 H 1.07998 * 126.29472 * 180.24703 * 28 24 23 39 39 H 1.08996 * 110.62170 * 151.43519 * 29 10 9 40 40 H 1.09004 * 110.62487 * 274.29301 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1498 -2.6707 -0.0005 11 1 -0.8012 -1.7968 -0.0064 12 6 -0.2769 -3.5956 1.2472 13 6 1.0672 -4.3850 1.2360 14 6 1.8189 -3.8071 -0.0005 15 1 2.9016 -3.9342 0.0058 16 6 1.0821 -4.3795 -1.2488 17 1 1.6508 -4.1775 -2.1565 18 7 0.8465 -5.8172 -1.0949 19 6 1.8005 -6.6987 -1.4547 20 8 2.8565 -6.3006 -1.9075 21 6 1.5632 -8.1455 -1.3003 22 6 0.3931 -8.7542 -0.7937 23 7 0.5683 -10.0467 -0.8162 24 7 1.8399 -10.3227 -1.3312 25 6 2.4165 -11.6564 -1.5185 26 9 2.7161 -11.8490 -2.8715 27 9 3.5873 -11.7689 -0.7611 28 6 2.4400 -9.1595 -1.6301 29 6 -0.2739 -3.6102 -1.2377 30 1 -0.4850 0.8399 0.0004 31 1 -0.3863 -3.0027 2.1552 32 1 -1.1156 -4.2823 1.1324 33 1 0.8933 -5.4541 1.1146 34 1 1.6249 -4.1871 2.1513 35 1 0.0041 -6.1347 -0.7340 36 1 -0.4913 -8.2396 -0.4480 37 1 1.6999 -12.4109 -1.1941 38 1 3.4282 -9.0390 -2.0488 39 1 -1.1129 -4.2955 -1.1168 40 1 -0.3841 -3.0279 -2.1526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096246236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:06 Heat of formation + Delta-G solvation = -17.598964 kcal Electronic energy + Delta-G solvation = -27657.677086 eV Core-core repulsion = 23339.028345 eV Total energy + Delta-G solvation = -4318.648742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.39607 -48.50153 -42.49290 -41.17941 -39.44473 -35.45557 -34.30960 -33.72743 -31.68773 -30.93345 -30.57374 -29.24446 -27.27539 -26.05424 -24.10296 -22.91662 -22.39203 -21.64045 -21.08285 -20.11378 -19.81132 -18.88489 -18.87235 -18.52606 -17.52638 -16.95672 -16.75114 -16.47485 -16.07670 -15.98643 -15.71186 -15.30624 -15.14132 -14.94700 -14.82247 -14.61176 -14.08825 -13.96297 -13.84762 -13.43030 -13.22685 -13.13963 -12.85605 -12.76743 -12.59367 -12.40171 -12.31186 -11.99194 -11.86004 -11.46903 -11.16879 -11.10076 -11.03438 -10.86383 -10.77096 -10.19705 -9.84010 -8.81922 -7.76966 -5.15810 0.20152 0.61655 1.02740 1.47352 1.49452 1.55429 2.22276 2.41553 2.50264 2.55640 3.09869 3.36342 3.49755 3.54912 3.56928 3.72432 3.92484 4.00638 4.15693 4.17200 4.21601 4.42198 4.49607 4.61399 4.67554 4.77832 4.86930 5.02977 5.11400 5.19963 5.21360 5.27982 5.28661 5.37378 5.51317 5.59531 5.80528 5.92859 6.20781 6.32028 6.71057 7.08782 7.36548 7.72178 8.58440 9.29461 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.002597 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.013478 B =10780.250775 C =11131.511181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.062 4.062 3 Si 0.974 3.026 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.225 4.225 8 H 0.069 0.931 9 N -0.620 5.620 10 C 0.136 3.864 11 H 0.119 0.881 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.117 3.883 15 H 0.062 0.938 16 C 0.150 3.850 17 H 0.054 0.946 18 N -0.690 5.690 19 C 0.589 3.411 20 O -0.594 6.594 21 C -0.286 4.286 22 C 0.112 3.888 23 N -0.286 5.286 24 N -0.429 5.429 25 C 0.501 3.499 26 F -0.186 7.186 27 F -0.186 7.186 28 C 0.137 3.863 29 C -0.123 4.123 30 H 0.249 0.751 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.415 0.585 36 H 0.236 0.764 37 H 0.211 0.789 38 H 0.195 0.805 39 H 0.102 0.898 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -25.790 -1.228 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.255 4.255 3 Si 0.803 3.197 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.354 4.354 8 H 0.087 0.913 9 N -0.342 5.342 10 C 0.030 3.970 11 H 0.137 0.863 12 C -0.163 4.163 13 C -0.155 4.155 14 C 0.009 3.991 15 H 0.080 0.920 16 C 0.042 3.958 17 H 0.073 0.927 18 N -0.341 5.341 19 C 0.377 3.623 20 O -0.476 6.476 21 C -0.300 4.300 22 C -0.078 4.078 23 N -0.103 5.103 24 N -0.217 5.217 25 C 0.368 3.632 26 F -0.167 7.167 27 F -0.168 7.168 28 C -0.011 4.011 29 C -0.163 4.163 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.253 0.747 36 H 0.252 0.748 37 H 0.227 0.773 38 H 0.212 0.788 39 H 0.120 0.880 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.595 -26.506 -1.325 26.665 hybrid contribution 1.190 2.103 -0.234 2.428 sum -1.405 -24.403 -1.559 24.493 Atomic orbital electron populations 1.69651 1.05766 1.25089 1.58747 1.25372 0.96549 1.00034 1.03538 0.85218 0.77220 0.79511 0.77763 1.21051 1.21595 1.20952 1.19253 0.90441 0.83715 1.42022 0.91325 1.46744 1.03164 0.99408 1.84862 1.23691 0.85771 0.95642 0.91862 0.86347 1.23094 0.96904 0.97860 0.98429 1.22975 0.96556 0.99318 0.96636 1.23328 0.95761 0.84846 0.95153 0.92012 1.22287 0.97244 0.78635 0.97589 0.92745 1.45683 1.18817 1.05207 1.64396 1.17544 0.83108 0.85108 0.76512 1.90780 1.27658 1.80917 1.48197 1.20287 0.98431 0.92898 1.18410 1.24816 0.98468 0.90114 0.94391 1.77192 0.95125 1.17514 1.20451 1.49902 1.14129 1.06340 1.51338 1.21650 0.83680 0.83941 0.73911 1.93143 1.94308 1.94240 1.35036 1.93143 1.52425 1.95295 1.75893 1.23292 0.99234 0.85056 0.93527 1.23291 0.95148 0.98238 0.99603 0.94139 0.94668 0.89061 0.89177 0.94371 0.74702 0.74804 0.77303 0.78782 0.87952 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.53 10.47 21.65 0.23 -54.31 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.23 -12.81 10.59 84.03 0.89 -11.92 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.62 -31.27 2.97 -615.28 -1.83 -33.10 16 10 C 0.14 5.95 4.67 46.23 0.22 6.16 16 11 H 0.12 6.11 5.52 -2.39 -0.01 6.09 16 12 C -0.12 -4.36 6.53 32.57 0.21 -4.15 16 13 C -0.12 -3.95 6.36 32.57 0.21 -3.74 16 14 C 0.12 4.88 5.29 46.22 0.24 5.12 16 15 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 16 C 0.15 5.33 3.17 46.98 0.15 5.48 16 17 H 0.05 2.30 7.70 -2.39 -0.02 2.28 16 18 N -0.69 -17.69 3.66 -436.43 -1.60 -19.28 16 19 C 0.59 16.84 7.81 86.66 0.68 17.52 16 20 O -0.59 -22.81 16.63 -4.05 -0.07 -22.88 16 21 C -0.29 -6.07 6.13 -20.15 -0.12 -6.19 16 22 C 0.11 1.67 11.50 85.65 0.99 2.65 16 23 N -0.29 -4.61 12.50 -56.27 -0.70 -5.31 16 24 N -0.43 -6.87 3.84 -363.01 -1.40 -8.26 16 25 C 0.50 5.05 6.37 127.77 0.81 5.87 16 26 F -0.19 -2.40 17.47 44.97 0.79 -1.61 16 27 F -0.19 -2.46 17.47 44.97 0.79 -1.67 16 28 C 0.14 2.70 11.19 84.28 0.94 3.65 16 29 C -0.12 -4.31 6.22 32.58 0.20 -4.11 16 30 H 0.25 14.04 8.31 -92.72 -0.77 13.27 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 2.37 7.85 -2.39 -0.02 2.35 16 33 H 0.09 2.38 6.55 -2.39 -0.02 2.37 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.41 7.14 6.98 -92.71 -0.65 6.49 16 36 H 0.24 1.50 7.50 -2.91 -0.02 1.47 16 37 H 0.21 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.20 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.10 2.60 7.38 -2.39 -0.02 2.58 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.44 341.60 4.57 -70.87 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.45 Total: 13.92 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.88 Total: 13.30 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.30 Total: -120.27 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.07 Total: -22.88 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 1.57 Total: -3.28 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.44 4.57 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096246236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.269 kcal (2) G-P(sol) polarization free energy of solvation -75.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds