Wall clock time and date at job start Sat Apr 11 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99409 * 2 1 4 4 H 1.48494 * 109.47399 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47090 * 240.00022 * 3 2 1 6 6 H 1.48507 * 109.46849 * 120.00226 * 3 2 1 7 7 C 1.38805 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00189 * 158.05279 * 7 2 1 9 9 N 1.36937 * 119.99736 * 338.04898 * 7 2 1 10 10 C 1.50236 * 130.84181 * 342.58608 * 9 7 2 11 11 H 1.08999 * 115.85877 * 359.68013 * 10 9 7 12 12 C 1.55380 * 101.26244 * 234.04056 * 10 9 7 13 13 C 1.54857 * 103.48672 * 327.24857 * 12 10 9 14 14 C 1.50244 * 130.83437 * 162.92345 * 9 7 2 15 15 H 1.08998 * 115.85910 * 0.32150 * 14 9 7 16 16 C 1.55844 * 101.04946 * 233.93229 * 14 9 7 17 17 H 1.08997 * 110.62568 * 208.57336 * 16 14 9 18 18 N 1.46501 * 110.62829 * 85.55402 * 16 14 9 19 19 C 1.34772 * 120.00300 * 154.99791 * 18 16 14 20 20 O 1.21568 * 120.00059 * 0.02562 * 19 18 16 21 21 C 1.47709 * 120.00072 * 179.97438 * 19 18 16 22 22 C 1.41504 * 126.51779 * 179.97438 * 21 19 18 23 23 C 1.35361 * 105.50430 * 180.02562 * 22 21 19 24 24 N 1.35036 * 107.22852 * 0.02562 * 23 22 21 25 25 C 1.46497 * 124.88689 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47537 * 210.00030 * 25 24 23 27 27 F 1.39897 * 109.47166 * 330.00214 * 25 24 23 28 28 N 1.28472 * 110.23222 * 359.72532 * 24 23 22 29 29 C 1.55486 * 103.32748 * 326.98074 * 16 14 9 30 30 H 0.97002 * 119.99712 * 173.96529 * 1 2 3 31 31 H 1.09006 * 110.71760 * 208.69448 * 12 10 9 32 32 H 1.09000 * 110.50036 * 85.69738 * 12 10 9 33 33 H 1.09001 * 110.62073 * 241.38459 * 13 12 10 34 34 H 1.08995 * 110.62244 * 118.36837 * 13 12 10 35 35 H 0.97008 * 119.99672 * 334.99819 * 18 16 14 36 36 H 1.07999 * 127.24771 * 0.02562 * 22 21 19 37 37 H 1.07999 * 126.38848 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47089 * 89.99816 * 25 24 23 39 39 H 1.09005 * 110.60427 * 241.58730 * 29 16 14 40 40 H 1.09000 * 110.89646 * 118.55263 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6966 -1.2125 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0317 -1.2357 -0.3501 9 7 1.4001 -2.3452 0.4423 10 6 0.1673 -2.5401 1.2784 11 1 -0.3378 -1.6294 1.6002 12 6 0.7151 -3.4383 2.4219 13 6 1.8031 -4.2899 1.7226 14 6 1.7613 -3.7904 0.2470 15 1 2.6600 -3.9808 -0.3396 16 6 0.4300 -4.3550 -0.3342 17 1 0.3160 -5.4086 -0.0790 18 7 0.3794 -4.1659 -1.7860 19 6 -0.3810 -4.9792 -2.5455 20 8 -1.0252 -5.8695 -2.0257 21 6 -0.4324 -4.7881 -4.0092 22 6 -1.1794 -5.5568 -4.9331 23 6 -0.9167 -5.0191 -6.1472 24 7 -0.0626 -3.9913 -5.9531 25 6 0.4754 -3.1370 -7.0146 26 9 1.7457 -2.6805 -6.6471 27 9 0.5692 -3.8714 -8.2016 28 7 0.2053 -3.8664 -4.7028 29 6 -0.6602 -3.4998 0.3712 30 1 -0.4850 -0.8354 -0.0883 31 1 -0.0730 -4.0759 2.8226 32 1 1.1539 -2.8270 3.2105 33 1 1.5545 -5.3498 1.7765 34 1 2.7814 -4.1009 2.1645 35 1 0.8932 -3.4552 -2.2007 36 1 -1.8235 -6.3960 -4.7153 37 1 -1.3157 -5.3503 -7.0945 38 1 -0.1872 -2.2848 -7.1661 39 1 -1.3123 -4.1314 0.9746 40 1 -1.2418 -2.9341 -0.3566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097140203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:09 Heat of formation + Delta-G solvation = 3.510890 kcal Electronic energy + Delta-G solvation = -28192.419711 eV Core-core repulsion = 23874.686361 eV Total energy + Delta-G solvation = -4317.733350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.76494 -47.85264 -42.77376 -39.78303 -38.31205 -33.86948 -33.08342 -32.68840 -30.99031 -29.10832 -28.93914 -28.05012 -26.61366 -24.01273 -23.36409 -21.83704 -21.26428 -19.84592 -19.72138 -19.02318 -18.73308 -18.60708 -17.71222 -17.58849 -17.03337 -15.84123 -15.68025 -14.86277 -14.63969 -14.60559 -14.35496 -14.14316 -14.02432 -13.72005 -13.67649 -13.63911 -13.55109 -13.01861 -12.61017 -12.36872 -11.75511 -11.55701 -11.35534 -11.10829 -10.76251 -10.67180 -10.59679 -10.39157 -10.08386 -9.99551 -9.80185 -9.61789 -9.42735 -9.40410 -9.35898 -8.68885 -8.42915 -7.00959 -6.09880 -3.15629 1.32886 1.55793 1.96181 3.07453 3.46239 3.48445 3.52302 3.58194 3.63619 3.69665 4.01726 4.42801 4.51924 4.64807 4.97596 5.07687 5.33580 5.42232 5.51069 5.54391 5.56843 5.76707 5.85441 5.98400 6.00585 6.11731 6.14660 6.24986 6.26209 6.34062 6.49578 6.56044 6.66274 6.80922 6.92643 7.10100 7.23106 7.51059 7.57285 8.02385 8.37963 8.54681 8.95211 9.76514 10.44800 11.26893 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011413 B = 0.004311 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.766474 B = 6493.552260 C = 8311.955562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.027 4.027 3 Si 1.067 2.933 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.318 4.318 8 H 0.066 0.934 9 N -0.594 5.594 10 C 0.140 3.860 11 H 0.108 0.892 12 C -0.134 4.134 13 C -0.126 4.126 14 C 0.126 3.874 15 H 0.091 0.909 16 C 0.127 3.873 17 H 0.084 0.916 18 N -0.687 5.687 19 C 0.597 3.403 20 O -0.543 6.543 21 C 0.011 3.989 22 C -0.169 4.169 23 C -0.008 4.008 24 N -0.353 5.353 25 C 0.505 3.495 26 F -0.164 7.164 27 F -0.177 7.177 28 N -0.239 5.239 29 C -0.139 4.139 30 H 0.271 0.729 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.412 0.588 36 H 0.170 0.830 37 H 0.189 0.811 38 H 0.164 0.836 39 H 0.059 0.941 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -8.962 -12.294 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.228 4.228 3 Si 0.897 3.103 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.446 4.446 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.033 3.967 11 H 0.126 0.874 12 C -0.174 4.174 13 C -0.165 4.165 14 C 0.018 3.982 15 H 0.109 0.891 16 C 0.021 3.979 17 H 0.102 0.898 18 N -0.336 5.336 19 C 0.380 3.620 20 O -0.419 6.419 21 C -0.153 4.153 22 C -0.197 4.197 23 C -0.148 4.148 24 N -0.151 5.151 25 C 0.372 3.628 26 F -0.145 7.145 27 F -0.158 7.158 28 N -0.072 5.072 29 C -0.179 4.179 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.248 0.752 36 H 0.187 0.813 37 H 0.206 0.794 38 H 0.181 0.819 39 H 0.078 0.922 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.152 -6.727 -11.955 13.766 hybrid contribution 0.043 -2.044 -0.683 2.155 sum -1.110 -8.770 -12.638 15.423 Atomic orbital electron populations 1.70764 1.06451 1.30541 1.48871 1.25700 0.96663 1.00754 0.99662 0.83484 0.74631 0.76114 0.76061 1.21130 1.22139 1.22192 1.19723 0.95788 0.86128 1.42929 0.91662 1.46559 1.28902 0.99333 1.56807 1.22941 0.88853 0.95291 0.89603 0.87424 1.22895 0.97707 0.98204 0.98566 1.22877 0.99045 0.97766 0.96856 1.23205 0.94081 0.86732 0.94186 0.89122 1.22763 0.98349 0.98837 0.77953 0.89776 1.45891 1.46299 1.33344 1.08097 1.16844 0.79954 0.82058 0.83098 1.90759 1.44633 1.33777 1.72734 1.22372 1.01066 0.96300 0.95572 1.21889 1.04337 1.03321 0.90108 1.22841 0.98346 0.92072 1.01514 1.46746 1.35720 1.26562 1.06040 1.21492 0.82562 0.86316 0.72449 1.93179 1.41973 1.88159 1.91198 1.93133 1.96534 1.80062 1.46086 1.73724 1.21477 1.22723 0.89236 1.23528 0.97033 0.97975 0.99404 0.91729 0.92704 0.92497 0.92580 0.92137 0.75225 0.81292 0.79419 0.81908 0.92203 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 12.67 55.49 0.70 -26.48 16 2 C -0.03 -0.74 5.34 -17.43 -0.09 -0.83 16 3 Si 1.07 25.04 29.97 -169.99 -5.09 19.95 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.32 -8.60 10.42 -15.06 -0.16 -8.76 16 8 H 0.07 1.77 7.92 -52.49 -0.42 1.35 16 9 N -0.59 -14.23 2.83 -146.09 -0.41 -14.65 16 10 C 0.14 3.12 3.77 -63.06 -0.24 2.88 16 11 H 0.11 2.70 6.55 -51.93 -0.34 2.36 16 12 C -0.13 -2.51 6.42 -24.49 -0.16 -2.67 16 13 C -0.13 -2.22 6.44 -24.24 -0.16 -2.37 16 14 C 0.13 2.51 5.06 -62.80 -0.32 2.20 16 15 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 16 C 0.13 2.46 2.82 -65.09 -0.18 2.27 16 17 H 0.08 1.58 7.23 -51.93 -0.38 1.20 16 18 N -0.69 -13.21 5.09 -52.05 -0.27 -13.48 16 19 C 0.60 11.17 7.82 -12.39 -0.10 11.07 16 20 O -0.54 -11.09 16.57 5.31 0.09 -11.00 16 21 C 0.01 0.17 7.13 -82.76 -0.59 -0.42 16 22 C -0.17 -2.15 10.81 -39.36 -0.43 -2.58 16 23 C -0.01 -0.08 10.98 -17.17 -0.19 -0.27 16 24 N -0.35 -4.21 3.68 -66.62 -0.24 -4.45 16 25 C 0.50 4.33 6.56 59.85 0.39 4.73 16 26 F -0.16 -1.91 17.26 2.25 0.04 -1.87 16 27 F -0.18 -1.39 16.96 2.25 0.04 -1.35 16 28 N -0.24 -3.76 11.42 33.42 0.38 -3.38 16 29 C -0.14 -2.84 6.12 -23.89 -0.15 -2.99 16 30 H 0.27 7.90 5.65 -40.82 -0.23 7.67 16 31 H 0.05 0.90 7.80 -51.93 -0.41 0.50 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.86 7.82 -51.93 -0.41 0.46 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.41 8.34 8.38 -40.82 -0.34 7.99 16 36 H 0.17 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.16 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.11 7.80 -51.93 -0.41 0.70 16 40 H 0.06 1.46 7.59 -51.93 -0.39 1.06 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -33.32 342.90 -6.61 -39.93 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.65 Total: 9.37 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.36 Total: 2.25 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.16 Total: -62.44 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.09 Total: 19.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.32 -6.61 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097140203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.439 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds