Wall clock time and date at job start Sat Apr 11 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99409 * 2 1 4 4 H 1.48494 * 109.47399 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47090 * 240.00022 * 3 2 1 6 6 H 1.48507 * 109.46849 * 120.00226 * 3 2 1 7 7 C 1.38805 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00189 * 158.05279 * 7 2 1 9 9 N 1.36937 * 119.99736 * 338.04898 * 7 2 1 10 10 C 1.50236 * 130.84181 * 342.58608 * 9 7 2 11 11 H 1.08999 * 115.85877 * 359.68013 * 10 9 7 12 12 C 1.55380 * 101.26244 * 234.04056 * 10 9 7 13 13 C 1.54857 * 103.48672 * 327.24857 * 12 10 9 14 14 C 1.50244 * 130.83437 * 162.92345 * 9 7 2 15 15 H 1.08998 * 115.85910 * 0.32150 * 14 9 7 16 16 C 1.55844 * 101.04946 * 233.93229 * 14 9 7 17 17 H 1.08997 * 110.62568 * 208.57336 * 16 14 9 18 18 N 1.46501 * 110.62829 * 85.55402 * 16 14 9 19 19 C 1.34772 * 120.00300 * 154.99791 * 18 16 14 20 20 O 1.21568 * 120.00059 * 0.02562 * 19 18 16 21 21 C 1.47709 * 120.00072 * 179.97438 * 19 18 16 22 22 C 1.41504 * 126.51779 * 179.97438 * 21 19 18 23 23 C 1.35361 * 105.50430 * 180.02562 * 22 21 19 24 24 N 1.35036 * 107.22852 * 0.02562 * 23 22 21 25 25 C 1.46497 * 124.88689 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47537 * 210.00030 * 25 24 23 27 27 F 1.39897 * 109.47166 * 330.00214 * 25 24 23 28 28 N 1.28472 * 110.23222 * 359.72532 * 24 23 22 29 29 C 1.55486 * 103.32748 * 326.98074 * 16 14 9 30 30 H 0.97002 * 119.99712 * 173.96529 * 1 2 3 31 31 H 1.09006 * 110.71760 * 208.69448 * 12 10 9 32 32 H 1.09000 * 110.50036 * 85.69738 * 12 10 9 33 33 H 1.09001 * 110.62073 * 241.38459 * 13 12 10 34 34 H 1.08995 * 110.62244 * 118.36837 * 13 12 10 35 35 H 0.97008 * 119.99672 * 334.99819 * 18 16 14 36 36 H 1.07999 * 127.24771 * 0.02562 * 22 21 19 37 37 H 1.07999 * 126.38848 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47089 * 89.99816 * 25 24 23 39 39 H 1.09005 * 110.60427 * 241.58730 * 29 16 14 40 40 H 1.09000 * 110.89646 * 118.55263 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6966 -1.2125 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0317 -1.2357 -0.3501 9 7 1.4001 -2.3452 0.4423 10 6 0.1673 -2.5401 1.2784 11 1 -0.3378 -1.6294 1.6002 12 6 0.7151 -3.4383 2.4219 13 6 1.8031 -4.2899 1.7226 14 6 1.7613 -3.7904 0.2470 15 1 2.6600 -3.9808 -0.3396 16 6 0.4300 -4.3550 -0.3342 17 1 0.3160 -5.4086 -0.0790 18 7 0.3794 -4.1659 -1.7860 19 6 -0.3810 -4.9792 -2.5455 20 8 -1.0252 -5.8695 -2.0257 21 6 -0.4324 -4.7881 -4.0092 22 6 -1.1794 -5.5568 -4.9331 23 6 -0.9167 -5.0191 -6.1472 24 7 -0.0626 -3.9913 -5.9531 25 6 0.4754 -3.1370 -7.0146 26 9 1.7457 -2.6805 -6.6471 27 9 0.5692 -3.8714 -8.2016 28 7 0.2053 -3.8664 -4.7028 29 6 -0.6602 -3.4998 0.3712 30 1 -0.4850 -0.8354 -0.0883 31 1 -0.0730 -4.0759 2.8226 32 1 1.1539 -2.8270 3.2105 33 1 1.5545 -5.3498 1.7765 34 1 2.7814 -4.1009 2.1645 35 1 0.8932 -3.4552 -2.2007 36 1 -1.8235 -6.3960 -4.7153 37 1 -1.3157 -5.3503 -7.0945 38 1 -0.1872 -2.2848 -7.1661 39 1 -1.3123 -4.1314 0.9746 40 1 -1.2418 -2.9341 -0.3566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097140203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:08 Heat of formation + Delta-G solvation = -19.025530 kcal Electronic energy + Delta-G solvation = -28193.396963 eV Core-core repulsion = 23874.686361 eV Total energy + Delta-G solvation = -4318.710602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.47628 -48.58775 -43.77028 -41.37607 -39.84730 -35.47041 -34.67942 -33.99722 -31.98026 -30.91038 -30.53147 -29.61938 -27.62046 -25.93042 -24.59499 -22.75811 -22.69112 -21.61515 -21.08901 -20.39742 -19.80458 -19.50155 -19.32354 -18.59344 -18.18026 -17.36795 -16.77656 -16.50007 -15.94508 -15.63554 -15.50444 -15.39029 -15.36629 -15.26356 -15.01597 -14.86253 -14.48350 -14.37065 -13.93709 -13.47524 -13.33967 -13.31022 -12.91496 -12.59473 -12.41140 -12.21111 -12.13384 -11.96402 -11.93201 -11.60604 -11.47339 -11.30485 -10.94679 -10.70023 -10.61706 -10.36647 -10.03875 -8.98081 -8.25177 -5.25426 0.24843 0.71059 0.99233 1.57902 1.65750 1.83360 2.11193 2.25313 2.47073 2.64034 2.76481 3.20172 3.36820 3.44427 3.50408 3.71075 3.85115 3.91199 4.04190 4.13430 4.27797 4.35371 4.47982 4.50109 4.54138 4.61346 4.67695 4.79668 4.87966 5.04516 5.06840 5.07964 5.26966 5.35425 5.44296 5.46389 5.57969 5.66460 6.30547 6.35292 6.63370 6.86765 7.06398 7.70560 8.46734 9.13192 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011413 B = 0.004311 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.766474 B = 6493.552260 C = 8311.955562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.080 4.080 3 Si 1.114 2.886 4 H -0.295 1.295 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.317 4.317 8 H 0.060 0.940 9 N -0.617 5.617 10 C 0.131 3.869 11 H 0.071 0.929 12 C -0.125 4.125 13 C -0.114 4.114 14 C 0.124 3.876 15 H 0.093 0.907 16 C 0.135 3.865 17 H 0.098 0.902 18 N -0.693 5.693 19 C 0.596 3.404 20 O -0.565 6.565 21 C -0.022 4.022 22 C -0.185 4.185 23 C 0.021 3.979 24 N -0.352 5.352 25 C 0.500 3.500 26 F -0.185 7.185 27 F -0.169 7.169 28 N -0.271 5.271 29 C -0.129 4.129 30 H 0.260 0.740 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.405 0.595 36 H 0.182 0.818 37 H 0.238 0.762 38 H 0.211 0.789 39 H 0.081 0.919 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -10.275 -13.575 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.275 4.275 3 Si 0.940 3.060 4 H -0.222 1.222 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.445 4.445 8 H 0.078 0.922 9 N -0.340 5.340 10 C 0.024 3.976 11 H 0.089 0.911 12 C -0.164 4.164 13 C -0.154 4.154 14 C 0.017 3.983 15 H 0.111 0.889 16 C 0.029 3.971 17 H 0.116 0.884 18 N -0.341 5.341 19 C 0.382 3.618 20 O -0.443 6.443 21 C -0.184 4.184 22 C -0.212 4.212 23 C -0.119 4.119 24 N -0.150 5.150 25 C 0.369 3.631 26 F -0.167 7.167 27 F -0.150 7.150 28 N -0.106 5.106 29 C -0.170 4.170 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.199 0.801 37 H 0.254 0.746 38 H 0.227 0.773 39 H 0.100 0.900 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.846 -8.080 -13.233 15.528 hybrid contribution -0.053 -1.700 -0.406 1.749 sum -0.899 -9.781 -13.639 16.808 Atomic orbital electron populations 1.70851 1.07429 1.29953 1.51867 1.26907 0.96746 1.03872 1.00023 0.82838 0.73667 0.72485 0.77003 1.22171 1.20419 1.20993 1.19933 0.95577 0.87494 1.41535 0.92179 1.46739 1.29431 1.00299 1.57523 1.22909 0.88498 0.94889 0.91268 0.91140 1.22822 0.98683 0.97885 0.96988 1.22826 0.98948 0.99256 0.94358 1.23405 0.94352 0.84538 0.96035 0.88900 1.22696 0.97249 0.99019 0.78126 0.88380 1.45927 1.46610 1.33379 1.08139 1.17190 0.79014 0.81295 0.84336 1.90719 1.45388 1.34571 1.73649 1.22190 1.03321 0.98228 0.94643 1.22150 1.04748 1.03961 0.90329 1.23533 0.96063 0.89905 1.02399 1.47156 1.35337 1.26978 1.05493 1.22292 0.82279 0.86925 0.71588 1.93137 1.43728 1.88354 1.91436 1.93150 1.96471 1.80107 1.45294 1.73636 1.22525 1.23378 0.91051 1.23418 0.97137 0.97689 0.98715 0.92953 0.89828 0.93155 0.89295 0.91662 0.76074 0.80099 0.74587 0.77270 0.90031 0.94982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.47 12.67 21.65 0.27 -58.20 16 2 C -0.08 -4.56 5.34 84.86 0.45 -4.10 16 3 Si 1.11 51.48 29.97 68.60 2.06 53.53 16 4 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.32 -17.49 10.42 84.03 0.88 -16.61 16 8 H 0.06 3.30 7.92 -2.91 -0.02 3.28 16 9 N -0.62 -30.02 2.83 -616.12 -1.75 -31.77 16 10 C 0.13 5.93 3.77 46.06 0.17 6.10 16 11 H 0.07 3.71 6.55 -2.39 -0.02 3.70 16 12 C -0.12 -4.48 6.42 32.05 0.21 -4.28 16 13 C -0.11 -3.76 6.44 32.21 0.21 -3.56 16 14 C 0.12 4.85 5.06 46.23 0.23 5.08 16 15 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 16 C 0.14 5.18 2.82 46.83 0.13 5.31 16 17 H 0.10 3.51 7.23 -2.39 -0.02 3.49 16 18 N -0.69 -27.22 5.09 -436.87 -2.23 -29.45 16 19 C 0.60 22.67 7.82 86.75 0.68 23.35 16 20 O -0.57 -23.18 16.57 -3.93 -0.07 -23.25 16 21 C -0.02 -0.71 7.13 42.46 0.30 -0.41 16 22 C -0.18 -4.44 10.81 22.41 0.24 -4.19 16 23 C 0.02 0.36 10.98 83.54 0.92 1.28 16 24 N -0.35 -7.69 3.68 -364.70 -1.34 -9.03 16 25 C 0.50 7.34 6.56 127.77 0.84 8.18 16 26 F -0.19 -4.13 17.26 44.97 0.78 -3.35 16 27 F -0.17 -2.12 16.96 44.97 0.76 -1.35 16 28 N -0.27 -8.49 11.42 -48.17 -0.55 -9.04 16 29 C -0.13 -5.35 6.12 32.43 0.20 -5.15 16 30 H 0.26 15.97 5.65 -92.71 -0.52 15.44 16 31 H 0.08 2.52 7.80 -2.38 -0.02 2.50 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.39 7.82 -2.39 -0.02 2.37 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.40 17.05 8.38 -92.70 -0.78 16.27 16 36 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.24 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.21 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.08 2.96 7.80 -2.38 -0.02 2.94 16 40 H 0.03 1.51 7.59 -2.39 -0.02 1.49 16 Total: -1.00 -75.85 342.90 3.97 -71.88 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.56 Total: 29.03 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 5.46 Total: 11.00 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -5.59 Total: -137.49 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 1.54 Total: -4.70 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.53 kcal Total: -75.85 3.97 -71.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097140203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.858 kcal (2) G-P(sol) polarization free energy of solvation -75.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds