Wall clock time and date at job start Sat Apr 11 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34236 * 126.28246 * 2 1 4 4 H 0.97001 * 125.73561 * 359.96436 * 3 2 1 5 5 N 1.39933 * 108.52318 * 180.23893 * 3 2 1 6 6 C 1.30533 * 108.89257 * 359.57877 * 5 3 2 7 7 Cl 1.73601 * 126.00584 * 180.12607 * 6 5 3 8 8 C 1.38065 * 126.27765 * 179.97438 * 2 1 3 9 9 C 1.47385 * 126.42694 * 0.03155 * 8 2 1 10 10 O 1.21612 * 119.99949 * 89.99236 * 9 8 2 11 11 N 1.34779 * 119.99903 * 269.99791 * 9 8 2 12 12 C 1.48111 * 127.03255 * 179.70959 * 11 9 8 13 13 C 1.54600 * 103.41944 * 219.28328 * 12 11 9 14 14 H 1.08996 * 110.57627 * 81.17129 * 13 12 11 15 15 C 1.53006 * 110.98780 * 204.37071 * 13 12 11 16 16 N 1.46496 * 109.47325 * 288.65600 * 15 13 12 17 17 C 1.36935 * 119.99957 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00181 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00214 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46930 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47024 * 119.99917 * 21 19 17 24 24 H 1.48498 * 109.46965 * 239.99918 * 21 19 17 25 25 C 1.54613 * 102.91064 * 322.86511 * 13 12 11 26 26 H 1.09004 * 110.41414 * 262.76152 * 25 13 12 27 27 C 1.52999 * 110.32548 * 140.59389 * 25 13 12 28 28 C 1.47480 * 127.03122 * 0.02562 * 11 9 8 29 29 H 1.09002 * 109.46858 * 90.02630 * 1 2 3 30 30 H 1.08997 * 109.47443 * 210.02832 * 1 2 3 31 31 H 1.09008 * 109.47286 * 330.03382 * 1 2 3 32 32 H 1.08999 * 110.66416 * 337.76157 * 12 11 9 33 33 H 1.09000 * 110.66622 * 100.88446 * 12 11 9 34 34 H 1.09002 * 109.46923 * 48.65226 * 15 13 12 35 35 H 1.09001 * 109.46848 * 168.65076 * 15 13 12 36 36 H 0.97003 * 119.99948 * 359.97438 * 16 15 13 37 37 H 0.96998 * 120.00456 * 179.97438 * 20 19 17 38 38 H 1.09004 * 109.47411 * 302.92282 * 27 25 13 39 39 H 1.09000 * 109.47369 * 62.92176 * 27 25 13 40 40 H 1.09000 * 109.47162 * 182.92510 * 27 25 13 41 41 H 1.09006 * 109.91269 * 273.87803 * 28 11 9 42 42 H 1.09001 * 109.91769 * 34.96656 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6553 -0.0055 6 6 3.6598 -0.6498 0.0002 7 17 5.0841 -1.6423 -0.0002 8 6 2.3239 -1.1130 0.0005 9 6 1.8857 -2.5202 0.0005 10 8 1.7053 -3.1009 -1.0527 11 7 1.6849 -3.1635 1.1677 12 6 1.2421 -4.5652 1.3490 13 6 0.2723 -4.4825 2.5502 14 1 -0.7123 -4.1465 2.2251 15 6 0.1729 -5.8301 3.2680 16 7 -0.5672 -6.7765 2.4298 17 6 -0.7835 -8.0556 2.8683 18 1 -0.4081 -8.3668 3.8318 19 6 -1.4852 -8.9522 2.0742 20 7 -1.9432 -8.5728 0.9000 21 14 -1.7796 -10.6974 2.6721 22 1 -1.1672 -10.8709 4.0137 23 1 -3.2402 -10.9515 2.7574 24 1 -1.1650 -11.6570 1.7200 25 6 0.9389 -3.4253 3.4603 26 1 1.5269 -3.9106 4.2393 27 6 -0.1220 -2.5168 4.0848 28 6 1.8550 -2.6137 2.5256 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3634 0.8903 0.5133 32 1 0.7223 -4.9225 0.4600 33 1 2.0895 -5.2088 1.5852 34 1 1.1747 -6.2169 3.4551 35 1 -0.3489 -5.6991 4.2160 36 1 -0.9048 -6.4969 1.5644 37 1 -2.4333 -9.1994 0.3450 38 1 -0.7095 -2.0481 3.2952 39 1 -0.7779 -3.1092 4.7227 40 1 0.3655 -1.7457 4.6813 41 1 2.8932 -2.7180 2.8410 42 1 1.5667 -1.5626 2.5394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106223169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:19 Heat of formation + Delta-G solvation = 17.553345 kcal Electronic energy + Delta-G solvation = -25725.611998 eV Core-core repulsion = 21960.284255 eV Total energy + Delta-G solvation = -3765.327743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.70049 -40.91732 -38.96347 -37.99281 -36.41532 -34.19657 -33.77110 -33.01652 -32.45461 -30.61018 -28.68214 -27.28849 -27.03816 -25.10317 -23.34780 -23.10728 -22.22200 -21.08888 -20.19730 -19.17910 -18.66938 -17.76665 -17.30972 -16.58128 -16.42008 -16.35323 -16.16391 -15.64817 -15.31904 -15.12441 -14.83867 -14.56532 -14.17915 -14.11563 -13.92544 -13.62636 -13.38903 -13.30633 -13.11556 -13.04799 -12.89130 -12.83872 -12.76056 -12.39473 -12.07046 -11.95208 -11.92485 -11.73187 -11.50074 -11.42609 -11.13153 -10.91539 -10.59633 -9.93924 -9.74100 -8.96171 -7.91747 -5.20543 0.31444 0.40174 0.93862 1.40575 1.48986 1.50114 1.59958 1.73838 2.11424 2.58381 3.32729 3.42069 3.51104 3.59870 3.71612 3.83911 3.89307 4.05208 4.21357 4.27151 4.42207 4.55549 4.57760 4.58814 4.62253 4.68536 4.74124 4.85458 4.88232 4.92907 5.03432 5.09908 5.12807 5.24560 5.30545 5.39344 5.52937 5.58559 5.93248 6.21028 6.30136 6.49781 7.04810 7.36408 8.13163 8.34660 9.32013 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.002955 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.089884 B = 9471.973717 C = 9767.416179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.168 3.832 3 N -0.423 5.423 4 H 0.468 0.532 5 N -0.289 5.289 6 C 0.150 3.850 7 Cl 0.014 6.986 8 C -0.293 4.293 9 C 0.614 3.386 10 O -0.580 6.580 11 N -0.605 5.605 12 C 0.117 3.883 13 C -0.089 4.089 14 H 0.074 0.926 15 C 0.164 3.836 16 N -0.747 5.747 17 C -0.240 4.240 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.972 3.028 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.297 1.297 25 C -0.089 4.089 26 H 0.100 0.900 27 C -0.136 4.136 28 C 0.110 3.890 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.033 0.967 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 25.947 4.791 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.034 3.966 3 N -0.135 5.135 4 H 0.319 0.681 5 N -0.115 5.115 6 C -0.042 4.042 7 Cl 0.041 6.959 8 C -0.309 4.309 9 C 0.401 3.599 10 O -0.459 6.459 11 N -0.337 5.337 12 C -0.006 4.006 13 C -0.108 4.108 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.390 5.390 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.224 1.224 25 C -0.109 4.109 26 H 0.118 0.882 27 C -0.194 4.194 28 C -0.012 4.012 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.142 0.858 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.204 0.796 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.842 26.536 4.308 28.300 hybrid contribution -0.617 -1.787 -0.611 1.986 sum 8.225 24.749 3.697 26.341 Atomic orbital electron populations 1.20825 0.83206 1.06375 1.05629 1.21716 0.95932 0.84993 0.93948 1.45820 1.01749 1.09444 1.56510 0.68118 1.77100 0.98272 1.09914 1.26187 1.22581 0.88567 0.90855 1.02240 1.98419 1.35556 1.65118 1.96774 1.19594 0.91941 0.93556 1.25780 1.17054 0.75999 0.84971 0.81828 1.90804 1.53617 1.69129 1.32399 1.48785 1.65540 1.13080 1.06273 1.22319 0.97497 0.82266 0.98501 1.22309 0.98330 0.95499 0.94692 0.90769 1.20796 0.94553 0.87582 0.93269 1.42628 1.66113 1.09590 1.20628 1.19679 1.27391 0.88916 1.01227 0.90329 1.25575 1.01917 1.02431 0.97100 1.69836 1.43924 1.35967 1.12440 0.85090 0.76979 0.80066 0.77735 1.18749 1.22096 1.22437 1.22077 0.96989 0.95045 0.96756 0.88183 1.21811 0.97758 0.99070 1.00727 1.22356 1.00337 0.98923 0.79606 0.88154 0.89946 0.85764 0.92944 0.91162 0.95672 0.94919 0.79634 0.94161 0.92490 0.92507 0.90172 0.90474 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.25 71.23 0.73 -0.26 16 2 C 0.17 2.67 7.29 42.15 0.31 2.98 16 3 N -0.42 -5.38 7.28 -46.80 -0.34 -5.72 16 4 H 0.47 1.77 8.96 -213.43 -1.91 -0.14 16 5 N -0.29 -5.97 12.64 -48.95 -0.62 -6.59 16 6 C 0.15 3.63 7.89 85.66 0.68 4.31 16 7 Cl 0.01 0.33 29.19 -2.72 -0.08 0.25 16 8 C -0.29 -7.17 4.87 -20.13 -0.10 -7.26 16 9 C 0.61 19.34 7.24 86.65 0.63 19.97 16 10 O -0.58 -24.05 17.32 -4.07 -0.07 -24.12 16 11 N -0.61 -17.05 3.29 -814.01 -2.68 -19.73 16 12 C 0.12 3.92 6.44 86.61 0.56 4.47 16 13 C -0.09 -2.64 2.60 -9.70 -0.03 -2.67 16 14 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 15 C 0.16 6.15 5.59 86.38 0.48 6.63 16 16 N -0.75 -37.59 5.52 -343.45 -1.90 -39.49 16 17 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 20 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 21 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 C -0.09 -1.79 3.17 -9.91 -0.03 -1.82 16 26 H 0.10 1.83 7.86 -2.39 -0.02 1.81 16 27 C -0.14 -2.14 8.90 71.98 0.64 -1.50 16 28 C 0.11 2.17 6.41 86.53 0.55 2.72 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 31 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.05 2.15 7.85 -2.39 -0.02 2.13 16 33 H 0.07 2.41 7.95 -2.39 -0.02 2.39 16 34 H 0.03 0.94 8.00 -2.39 -0.02 0.92 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.37 20.34 7.67 -92.71 -0.71 19.63 16 37 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.06 0.88 8.13 -2.38 -0.02 0.86 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 42 H 0.09 1.44 7.25 -2.39 -0.02 1.43 16 Total: -1.00 -78.44 369.80 0.79 -77.65 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -1.56 Total: 18.47 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.73 Total: 10.99 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -5.25 Total: -131.78 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.07 Total: -24.12 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -78.44 0.79 -77.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106223169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.204 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds