Wall clock time and date at job start Sat Apr 11 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38212 * 120.00276 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99786 * 359.96657 * 4 3 2 6 6 C 1.38210 * 120.00225 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00367 * 179.97438 * 6 5 4 8 8 H 1.08994 * 115.55126 * 154.41564 * 7 6 5 9 9 C 1.52991 * 117.49584 * 8.74312 * 7 6 5 10 10 C 1.52996 * 117.49655 * 300.08581 * 7 6 5 11 11 H 1.09002 * 117.50040 * 359.97438 * 10 7 6 12 12 C 1.50705 * 117.50111 * 215.00092 * 10 7 6 13 13 O 1.20827 * 119.99367 * 0.02562 * 12 10 7 14 14 O 1.34229 * 120.00214 * 180.02562 * 12 10 7 15 15 C 1.45200 * 116.99649 * 180.02562 * 14 12 10 16 16 H 1.08998 * 109.47398 * 29.99832 * 15 14 12 17 17 C 1.50697 * 109.47038 * 150.00172 * 15 14 12 18 18 H 1.08005 * 119.99768 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00332 * 179.97438 * 17 15 14 20 20 N 1.31513 * 119.99489 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00287 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47310 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47411 * 119.99890 * 21 19 17 24 24 H 1.48503 * 109.47223 * 240.00100 * 21 19 17 25 25 C 1.50698 * 109.46996 * 269.99644 * 15 14 12 26 26 C 1.34512 * 125.79169 * 145.00444 * 25 15 14 27 27 C 1.41383 * 106.84374 * 180.02562 * 26 25 15 28 28 C 1.34515 * 106.83925 * 359.97438 * 27 26 25 29 29 O 1.34307 * 108.42218 * 359.73764 * 28 27 26 30 30 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 31 31 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 34 34 H 1.08005 * 120.00042 * 359.97239 * 3 2 1 35 35 H 1.07997 * 120.00087 * 179.97438 * 4 3 2 36 36 H 1.07998 * 119.99835 * 179.97438 * 5 4 3 37 37 H 1.09003 * 117.50453 * 0.02562 * 9 7 6 38 38 H 1.09007 * 117.50224 * 145.02427 * 9 7 6 39 39 H 0.97001 * 119.99788 * 179.97438 * 20 19 17 40 40 H 1.08006 * 126.57764 * 0.03059 * 26 25 15 41 41 H 1.08001 * 126.57743 * 180.02562 * 27 26 25 42 42 H 1.08000 * 125.78708 * 179.97438 * 28 27 26 43 43 H 1.07998 * 120.00075 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0004 6 6 3.5807 -1.1970 0.0009 7 6 4.3342 -2.5021 0.0005 8 1 3.8016 -3.3525 0.4260 9 6 5.8492 -2.4431 0.2050 10 6 5.2752 -2.7741 -1.1748 11 1 5.3490 -2.0093 -1.9480 12 6 5.3948 -4.1974 -1.6555 13 8 4.7601 -5.0725 -1.1160 14 8 6.2065 -4.4928 -2.6830 15 6 6.2715 -5.8844 -3.0926 16 1 5.3170 -6.3687 -2.8869 17 6 6.5657 -5.9603 -4.5686 18 1 6.6908 -5.0534 -5.1416 19 6 6.6751 -7.1874 -5.1876 20 7 6.5232 -8.2917 -4.4896 21 14 7.0404 -7.2816 -7.0170 22 1 7.1664 -5.9083 -7.5680 23 1 8.3111 -8.0197 -7.2308 24 1 5.9335 -7.9915 -7.7070 25 6 7.3648 -6.5830 -2.3260 26 6 7.3384 -7.8607 -1.9063 27 6 8.5595 -8.0964 -1.2338 28 6 9.2593 -6.9487 -1.2832 29 8 8.5334 -6.0374 -1.9512 30 6 2.1981 -1.1970 0.0058 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6583 2.1326 -0.0005 35 1 4.1204 2.1326 -0.0010 36 1 5.3517 0.0000 -0.0012 37 1 6.3010 -1.4603 0.3402 38 1 6.3136 -3.2550 0.7648 39 1 6.5998 -9.1551 -4.9251 40 1 6.5379 -8.5705 -2.0547 41 1 8.8709 -9.0208 -0.7701 42 1 10.2404 -6.7886 -0.8609 43 1 1.6581 -2.1323 0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123369351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:26 Heat of formation + Delta-G solvation = -39.409220 kcal Electronic energy + Delta-G solvation = -26566.788431 eV Core-core repulsion = 22736.837953 eV Total energy + Delta-G solvation = -3829.950478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.19479 -41.62886 -40.46094 -38.30941 -37.09470 -35.34346 -33.54226 -33.39642 -31.90177 -31.51479 -28.69059 -27.77274 -26.53644 -24.73392 -24.40608 -22.99913 -22.41906 -21.81359 -21.04406 -20.51364 -19.16868 -18.68919 -18.39625 -17.59198 -17.31407 -16.78846 -16.72718 -16.36779 -16.04930 -15.93571 -15.08631 -14.95344 -14.72600 -14.61530 -14.07967 -13.97842 -13.74050 -13.52335 -13.47854 -13.19856 -13.16309 -13.04402 -12.99490 -12.84584 -12.83592 -12.26595 -12.23214 -12.08458 -11.89344 -11.68610 -11.53858 -11.41296 -11.37148 -10.84524 -10.52610 -9.65763 -9.43650 -9.13227 -8.25829 -6.56341 0.33963 0.49541 1.08383 1.11559 1.37832 1.39269 1.52164 1.79188 2.07874 2.35551 2.39122 2.59631 2.97603 3.02086 3.49944 3.56975 3.72953 3.91773 4.01529 4.08311 4.17137 4.21402 4.25468 4.39141 4.51566 4.52984 4.55286 4.62994 4.68633 4.82292 4.83478 4.89965 5.00874 5.01362 5.14200 5.16473 5.31985 5.32709 5.39259 5.44989 5.59380 5.63778 5.68835 5.72448 5.80678 5.92756 6.13745 6.45586 6.55175 6.86785 7.15788 8.69900 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015371 B = 0.002915 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.186032 B = 9601.797193 C =10529.314577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.129 4.129 6 C -0.061 4.061 7 C -0.078 4.078 8 H 0.109 0.891 9 C -0.118 4.118 10 C -0.164 4.164 11 H 0.150 0.850 12 C 0.476 3.524 13 O -0.548 6.548 14 O -0.354 6.354 15 C 0.301 3.699 16 H 0.040 0.960 17 C -0.557 4.557 18 H 0.073 0.927 19 C 0.024 3.976 20 N -0.890 5.890 21 Si 0.983 3.017 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.270 1.270 25 C -0.010 4.010 26 C -0.189 4.189 27 C -0.230 4.230 28 C -0.069 4.069 29 O -0.195 6.195 30 C -0.131 4.131 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.271 0.729 40 H 0.125 0.875 41 H 0.166 0.834 42 H 0.241 0.759 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 16.764 10.394 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.147 4.147 6 C -0.061 4.061 7 C -0.096 4.096 8 H 0.127 0.873 9 C -0.154 4.154 10 C -0.182 4.182 11 H 0.168 0.832 12 C 0.322 3.678 13 O -0.439 6.439 14 O -0.270 6.270 15 C 0.247 3.753 16 H 0.058 0.942 17 C -0.594 4.594 18 H 0.092 0.908 19 C -0.180 4.180 20 N -0.524 5.524 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.061 4.061 26 C -0.208 4.208 27 C -0.249 4.249 28 C -0.135 4.135 29 O -0.092 6.092 30 C -0.149 4.149 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.184 0.816 42 H 0.258 0.742 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.880 16.556 10.451 19.959 hybrid contribution -0.009 -1.459 -1.007 1.773 sum -3.888 15.097 9.444 18.227 Atomic orbital electron populations 1.20841 0.89726 1.03596 1.02914 1.20200 0.97357 0.92842 0.99072 1.21389 0.94698 0.98020 1.00477 1.21453 0.94516 0.98512 0.98830 1.21301 1.01117 0.91567 1.00717 1.19064 0.93430 0.92597 1.01034 1.21102 0.92754 0.97344 0.98426 0.87332 1.23374 0.94519 1.05333 0.92221 1.21929 1.10455 0.90538 0.95308 0.83246 1.23427 0.75353 0.91853 0.77189 1.90577 1.45342 1.51078 1.56932 1.86520 1.60110 1.33195 1.47131 1.18779 0.90265 0.73522 0.92693 0.94220 1.21188 1.53357 0.94326 0.90543 0.90839 1.25849 0.93628 0.94347 1.04129 1.70170 1.46377 0.98211 1.37677 0.85135 0.78092 0.78802 0.77424 1.18623 1.20100 1.19493 1.23311 0.87347 0.95505 0.99897 1.21353 1.00613 0.95933 1.02938 1.22078 0.95647 1.00715 1.06491 1.24701 0.99525 0.88129 1.01139 1.83964 1.26077 1.41216 1.57939 1.21049 0.93625 0.98478 1.01727 0.90742 0.89889 0.91482 0.83808 0.83329 0.84050 0.83367 0.88234 0.91944 0.85682 0.81646 0.74248 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.90 16 2 C -0.09 -1.81 5.88 -19.87 -0.12 -1.93 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.87 16 4 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 5 C -0.13 -2.44 9.30 22.27 0.21 -2.23 16 6 C -0.06 -1.44 5.61 -19.87 -0.11 -1.55 16 7 C -0.08 -2.11 5.55 -11.54 -0.06 -2.18 16 8 H 0.11 3.34 7.67 -2.39 -0.02 3.32 16 9 C -0.12 -2.83 9.57 30.61 0.29 -2.54 16 10 C -0.16 -5.14 5.93 -11.52 -0.07 -5.21 16 11 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 12 C 0.48 21.23 7.71 71.24 0.55 21.78 16 13 O -0.55 -27.47 15.48 21.96 0.34 -27.13 16 14 O -0.35 -18.02 9.84 -48.77 -0.48 -18.50 16 15 C 0.30 17.13 2.41 29.10 0.07 17.20 16 16 H 0.04 2.50 7.16 -2.39 -0.02 2.48 16 17 C -0.56 -32.33 8.89 25.60 0.23 -32.11 16 18 H 0.07 4.19 7.81 -2.91 -0.02 4.17 16 19 C 0.02 1.32 5.30 84.65 0.45 1.77 16 20 N -0.89 -50.74 10.47 21.45 0.22 -50.51 16 21 Si 0.98 43.42 29.54 68.60 2.03 45.45 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 C -0.01 -0.55 5.67 24.83 0.14 -0.41 16 26 C -0.19 -9.79 9.04 22.19 0.20 -9.59 16 27 C -0.23 -9.64 10.91 22.19 0.24 -9.40 16 28 C -0.07 -2.68 12.09 66.97 0.81 -1.87 16 29 O -0.19 -9.58 10.64 0.76 0.01 -9.57 16 30 C -0.13 -3.04 9.39 22.27 0.21 -2.83 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 33 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 34 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.14 2.09 6.02 -2.91 -0.02 2.07 16 37 H 0.15 2.42 6.18 -2.39 -0.01 2.40 16 38 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.13 6.88 7.49 -2.91 -0.02 6.86 16 41 H 0.17 5.60 8.06 -2.91 -0.02 5.58 16 42 H 0.24 6.29 8.06 -2.91 -0.02 6.26 16 43 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -73.45 371.81 7.33 -66.12 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 1.02 Total: 29.65 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 4.19 Total: -35.50 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.22 Total: -50.51 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -0.13 Total: -55.20 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -73.45 7.33 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123369351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.706 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds