Wall clock time and date at job start Sat Apr 11 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38223 * 119.98138 * 2 1 4 4 C 1.38439 * 119.97121 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.02628 * 179.97438 * 4 3 2 6 6 C 1.38484 * 119.95153 * 359.97438 * 4 3 2 7 7 C 1.38175 * 119.97010 * 359.74833 * 6 4 3 8 8 C 1.38221 * 119.99360 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.97017 * 0.02562 * 8 2 1 10 10 N 1.46898 * 109.47041 * 79.99919 * 9 8 2 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47551 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99757 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46848 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99904 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99695 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46653 * 90.00074 * 22 20 18 24 24 H 1.48499 * 109.46893 * 209.99664 * 22 20 18 25 25 H 1.48494 * 109.47108 * 330.00037 * 22 20 18 26 26 H 1.08993 * 109.47554 * 270.01815 * 1 2 3 27 27 H 1.09003 * 109.47364 * 30.02846 * 1 2 3 28 28 H 1.09004 * 109.46297 * 150.02247 * 1 2 3 29 29 H 1.07998 * 120.01462 * 359.95193 * 3 2 1 30 30 H 1.07998 * 120.01133 * 180.02562 * 6 4 3 31 31 H 1.08001 * 119.98442 * 180.25742 * 7 6 4 32 32 H 1.08997 * 109.46924 * 319.99831 * 9 8 2 33 33 H 1.08995 * 109.46962 * 199.99985 * 9 8 2 34 34 H 1.00901 * 111.00121 * 56.04537 * 10 9 8 35 35 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 36 36 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 37 37 H 1.09004 * 109.46862 * 299.99897 * 12 11 10 38 38 H 1.09004 * 109.46998 * 59.99419 * 12 11 10 39 39 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 40 40 H 1.08996 * 109.47390 * 299.99902 * 16 14 13 41 41 H 1.09004 * 109.47662 * 59.99777 * 16 14 13 42 42 H 0.97002 * 119.99547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1973 0.0000 4 6 3.5821 1.1970 0.0005 5 9 4.2584 2.3666 0.0000 6 6 4.2733 -0.0030 0.0016 7 6 3.5806 -1.1985 0.0074 8 6 2.1980 -1.1971 0.0005 9 6 1.4436 -2.5018 0.0005 10 7 0.9909 -2.8056 -1.3635 11 6 0.2504 -4.0738 -1.4022 12 6 -0.2032 -4.3560 -2.8358 13 7 -0.9421 -5.6204 -2.8743 14 6 -1.4405 -6.0744 -4.0414 15 8 -1.2777 -5.4360 -5.0596 16 6 -2.2001 -7.3753 -4.0810 17 16 -2.7369 -7.7091 -5.7770 18 6 -3.5728 -9.2416 -5.5374 19 1 -3.6251 -9.6798 -4.5517 20 6 -4.1630 -9.8862 -6.6157 21 7 -4.0987 -9.3523 -7.8172 22 14 -5.0485 -11.5113 -6.3618 23 1 -6.4778 -11.2531 -6.0524 24 1 -4.9494 -12.3275 -7.5984 25 1 -4.4223 -12.2451 -5.2328 26 1 -0.3634 0.0003 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3632 -0.8903 -0.5135 29 1 1.6577 2.1325 -0.0008 30 1 5.3533 -0.0043 0.0024 31 1 4.1194 -2.1345 0.0124 32 1 0.5801 -2.4221 0.6608 33 1 2.0976 -3.2996 0.3524 34 1 1.7676 -2.8209 -2.0074 35 1 0.8966 -4.8823 -1.0602 36 1 -0.6214 -4.0055 -0.7516 37 1 -0.8492 -3.5475 -3.1782 38 1 0.6689 -4.4244 -3.4861 39 1 -1.0720 -6.1312 -2.0600 40 1 -1.5543 -8.1837 -3.7382 41 1 -3.0724 -7.3068 -3.4310 42 1 -4.5116 -9.8027 -8.5707 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:40 Heat of formation + Delta-G solvation = -66.945445 kcal Electronic energy + Delta-G solvation = -23164.988774 eV Core-core repulsion = 19378.120634 eV Total energy + Delta-G solvation = -3786.868141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.27064 -40.01352 -39.18730 -36.86000 -34.43955 -33.15743 -32.43440 -31.80071 -29.87043 -28.06042 -27.21590 -25.50587 -24.81121 -22.74226 -22.39163 -21.29723 -20.37137 -17.89433 -17.64620 -17.17765 -16.63884 -16.30735 -16.01050 -15.99818 -15.79235 -15.06468 -14.83296 -14.78767 -14.48448 -14.09830 -13.93606 -13.82656 -13.59727 -13.51361 -13.17986 -13.00944 -12.57057 -12.44424 -12.20566 -12.12654 -11.81859 -11.59355 -11.50867 -11.35337 -11.06914 -11.03063 -10.76985 -9.82447 -9.44817 -9.35820 -9.07737 -9.04799 -8.91290 -8.83855 -8.24229 -6.50686 -6.22222 -3.92917 0.66410 0.78878 2.90135 3.08955 3.09935 3.21844 3.27140 3.30776 3.60682 3.82654 4.07704 4.19790 4.22673 4.30347 4.45163 4.60440 4.69847 4.74131 4.85018 5.07874 5.09634 5.12941 5.16602 5.19888 5.23558 5.30453 5.37028 5.55909 5.59985 5.69087 5.73323 5.82251 5.86288 5.88715 5.89453 6.12517 6.13518 6.41590 6.49344 6.60116 6.88312 7.58847 7.67518 8.34528 8.59870 9.23044 10.85185 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.041016 B = 0.001524 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.490370 B =18362.585791 C =18446.082054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.027 4.027 3 C -0.159 4.159 4 C 0.103 3.897 5 F -0.141 7.141 6 C -0.163 4.163 7 C -0.080 4.080 8 C -0.100 4.100 9 C 0.101 3.899 10 N -0.680 5.680 11 C 0.049 3.951 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.347 0.653 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.287 17.480 21.630 31.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.028 4.028 3 C -0.178 4.178 4 C 0.083 3.917 5 F -0.120 7.120 6 C -0.181 4.181 7 C -0.098 4.098 8 C -0.101 4.101 9 C -0.028 4.028 10 N -0.312 5.312 11 C -0.080 4.080 12 C -0.002 4.002 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.166 0.834 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.965 18.960 19.770 30.746 hybrid contribution 0.199 -2.348 1.844 2.993 sum 14.163 16.611 21.615 30.720 Atomic orbital electron populations 1.20957 0.90058 1.04591 1.02500 1.19632 0.96718 0.91224 0.95218 1.21072 0.92190 0.99510 1.05043 1.17736 0.90202 0.81300 1.02427 1.91504 1.80313 1.46297 1.93865 1.21086 1.00851 0.91228 1.04975 1.20926 0.93425 0.97653 0.97830 1.19698 0.93187 0.94755 1.02451 1.20832 0.98300 0.92652 0.90976 1.60342 1.30306 1.33374 1.07193 1.22120 0.98592 0.90108 0.97222 1.21128 0.96837 0.86696 0.95537 1.45895 1.58415 1.24255 1.10904 1.20295 0.78440 0.86752 0.82701 1.90711 1.57019 1.58109 1.33122 1.23528 1.02092 0.96355 1.08415 1.85418 1.69891 1.28378 0.99677 1.22872 1.40629 1.07551 0.97403 0.90920 1.24995 0.95825 0.98323 0.94430 1.70020 1.42235 1.38705 0.99288 0.86166 0.79652 0.81801 0.77861 1.20261 1.20747 1.19718 0.91080 0.91357 0.88966 0.84729 0.84806 0.85130 0.89591 0.94016 0.83431 0.94394 0.90135 0.90641 0.91806 0.76911 0.89242 0.89185 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.26 36.01 0.33 -0.42 16 2 C -0.03 -0.20 5.88 -104.63 -0.62 -0.81 16 3 C -0.16 -1.22 9.68 -39.51 -0.38 -1.60 16 4 C 0.10 0.85 7.30 -39.42 -0.29 0.57 16 5 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 6 C -0.16 -1.14 10.03 -39.51 -0.40 -1.54 16 7 C -0.08 -0.50 9.67 -39.60 -0.38 -0.88 16 8 C -0.10 -0.67 5.39 -104.62 -0.56 -1.23 16 9 C 0.10 0.57 4.94 -4.97 -0.02 0.55 16 10 N -0.68 -4.61 5.83 -115.06 -0.67 -5.28 16 11 C 0.05 0.35 5.80 -3.82 -0.02 0.32 16 12 C 0.12 1.32 5.93 -4.05 -0.02 1.30 16 13 N -0.74 -9.29 5.56 -60.30 -0.33 -9.62 16 14 C 0.53 9.75 7.85 -10.99 -0.09 9.66 16 15 O -0.52 -11.69 15.86 5.56 0.09 -11.60 16 16 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 22 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.09 0.63 6.34 -51.93 -0.33 0.30 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.13 0.56 8.03 -52.49 -0.42 0.14 16 32 H 0.09 0.46 7.28 -51.93 -0.38 0.08 16 33 H 0.04 0.21 8.00 -51.93 -0.42 -0.21 16 34 H 0.35 2.35 8.72 -39.29 -0.34 2.00 16 35 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -34.52 376.22 -9.75 -44.27 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.00 Total: 0.58 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.03 Total: -9.81 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.27 Total: -40.25 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.52 -9.75 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.677 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds