Wall clock time and date at job start Sat Apr 11 2020 01:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38223 * 119.98138 * 2 1 4 4 C 1.38439 * 119.97121 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.02628 * 179.97438 * 4 3 2 6 6 C 1.38484 * 119.95153 * 359.97438 * 4 3 2 7 7 C 1.38175 * 119.97010 * 359.74833 * 6 4 3 8 8 C 1.38221 * 119.99360 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.97017 * 0.02562 * 8 2 1 10 10 N 1.46898 * 109.47041 * 79.99919 * 9 8 2 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47551 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99757 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46848 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99904 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99695 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46653 * 90.00074 * 22 20 18 24 24 H 1.48499 * 109.46893 * 209.99664 * 22 20 18 25 25 H 1.48494 * 109.47108 * 330.00037 * 22 20 18 26 26 H 1.08993 * 109.47554 * 270.01815 * 1 2 3 27 27 H 1.09003 * 109.47364 * 30.02846 * 1 2 3 28 28 H 1.09004 * 109.46297 * 150.02247 * 1 2 3 29 29 H 1.07998 * 120.01462 * 359.95193 * 3 2 1 30 30 H 1.07998 * 120.01133 * 180.02562 * 6 4 3 31 31 H 1.08001 * 119.98442 * 180.25742 * 7 6 4 32 32 H 1.08997 * 109.46924 * 319.99831 * 9 8 2 33 33 H 1.08995 * 109.46962 * 199.99985 * 9 8 2 34 34 H 1.00901 * 111.00121 * 56.04537 * 10 9 8 35 35 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 36 36 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 37 37 H 1.09004 * 109.46862 * 299.99897 * 12 11 10 38 38 H 1.09004 * 109.46998 * 59.99419 * 12 11 10 39 39 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 40 40 H 1.08996 * 109.47390 * 299.99902 * 16 14 13 41 41 H 1.09004 * 109.47662 * 59.99777 * 16 14 13 42 42 H 0.97002 * 119.99547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1973 0.0000 4 6 3.5821 1.1970 0.0005 5 9 4.2584 2.3666 0.0000 6 6 4.2733 -0.0030 0.0016 7 6 3.5806 -1.1985 0.0074 8 6 2.1980 -1.1971 0.0005 9 6 1.4436 -2.5018 0.0005 10 7 0.9909 -2.8056 -1.3635 11 6 0.2504 -4.0738 -1.4022 12 6 -0.2032 -4.3560 -2.8358 13 7 -0.9421 -5.6204 -2.8743 14 6 -1.4405 -6.0744 -4.0414 15 8 -1.2777 -5.4360 -5.0596 16 6 -2.2001 -7.3753 -4.0810 17 16 -2.7369 -7.7091 -5.7770 18 6 -3.5728 -9.2416 -5.5374 19 1 -3.6251 -9.6798 -4.5517 20 6 -4.1630 -9.8862 -6.6157 21 7 -4.0987 -9.3523 -7.8172 22 14 -5.0485 -11.5113 -6.3618 23 1 -6.4778 -11.2531 -6.0524 24 1 -4.9494 -12.3275 -7.5984 25 1 -4.4223 -12.2451 -5.2328 26 1 -0.3634 0.0003 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3632 -0.8903 -0.5135 29 1 1.6577 2.1325 -0.0008 30 1 5.3533 -0.0043 0.0024 31 1 4.1194 -2.1345 0.0124 32 1 0.5801 -2.4221 0.6608 33 1 2.0976 -3.2996 0.3524 34 1 1.7676 -2.8209 -2.0074 35 1 0.8966 -4.8823 -1.0602 36 1 -0.6214 -4.0055 -0.7516 37 1 -0.8492 -3.5475 -3.1782 38 1 0.6689 -4.4244 -3.4861 39 1 -1.0720 -6.1312 -2.0600 40 1 -1.5543 -8.1837 -3.7382 41 1 -3.0724 -7.3068 -3.4310 42 1 -4.5116 -9.8027 -8.5707 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:39 Heat of formation + Delta-G solvation = -90.620994 kcal Electronic energy + Delta-G solvation = -23166.015423 eV Core-core repulsion = 19378.120634 eV Total energy + Delta-G solvation = -3787.894789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.91681 -40.65169 -40.43957 -37.57601 -35.49262 -34.57094 -33.68192 -32.54581 -31.11653 -28.89320 -27.89672 -27.58348 -25.45451 -23.24752 -23.11477 -21.90696 -21.67699 -19.83015 -18.23606 -17.87879 -17.69015 -17.38763 -16.95975 -16.86574 -16.66842 -16.60116 -16.07451 -15.96905 -15.25159 -15.10432 -14.86509 -14.68408 -14.44244 -14.36034 -14.07079 -14.04382 -13.79624 -13.41193 -13.15248 -12.95055 -12.88126 -12.71329 -12.61522 -12.46778 -12.35515 -12.13200 -11.85934 -11.71386 -11.13084 -10.97958 -10.25800 -10.10902 -9.88114 -9.56901 -9.34608 -8.65525 -8.33429 -6.11595 0.11597 0.27671 1.28227 1.43748 1.48452 1.58598 1.63230 2.20904 2.29130 2.56501 3.00831 3.27498 3.30805 3.46306 3.73555 3.81522 3.89703 3.97839 4.08077 4.15431 4.21564 4.29133 4.33654 4.53361 4.54319 4.61875 4.66932 4.76316 4.86390 4.90358 4.96736 4.98915 5.07095 5.17768 5.31723 5.39524 5.42954 5.43757 5.62477 5.91834 6.00584 6.21076 6.36486 6.53050 7.07924 7.27204 8.75764 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.041016 B = 0.001524 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.490370 B =18362.585791 C =18446.082054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.037 4.037 3 C -0.170 4.170 4 C 0.079 3.921 5 F -0.153 7.153 6 C -0.168 4.168 7 C -0.079 4.079 8 C -0.103 4.103 9 C 0.105 3.895 10 N -0.689 5.689 11 C 0.064 3.936 12 C 0.124 3.876 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.257 1.257 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.347 0.653 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.418 0.582 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.373 15.979 24.352 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.038 4.038 3 C -0.189 4.189 4 C 0.060 3.940 5 F -0.131 7.131 6 C -0.187 4.187 7 C -0.097 4.097 8 C -0.104 4.104 9 C -0.023 4.023 10 N -0.321 5.321 11 C -0.066 4.066 12 C -0.001 4.001 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.072 5.928 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.181 1.181 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.255 0.745 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.068 17.467 22.569 31.818 hybrid contribution 0.245 -1.785 1.088 2.105 sum 14.313 15.682 23.657 31.788 Atomic orbital electron populations 1.20940 0.89365 1.04290 1.03148 1.19832 0.97333 0.91335 0.95278 1.21223 0.92174 1.00176 1.05287 1.18022 0.90686 0.81454 1.03829 1.91469 1.80549 1.46993 1.94130 1.21318 1.01669 0.91084 1.04586 1.21199 0.93448 0.98209 0.96891 1.19893 0.93536 0.95042 1.01894 1.20834 0.98729 0.92413 0.90278 1.60303 1.30595 1.33234 1.07970 1.21964 0.99400 0.90851 0.94344 1.21212 0.95746 0.84917 0.98192 1.45587 1.56486 1.24591 1.09851 1.20067 0.78471 0.86061 0.83535 1.90702 1.59236 1.59346 1.35307 1.23369 1.03444 0.98052 1.03142 1.85618 1.70819 1.29277 1.07084 1.23218 1.40572 1.07549 0.98076 0.89776 1.26137 0.96559 1.02553 0.93933 1.70190 1.43494 1.40711 1.00418 0.84945 0.78346 0.76430 0.78200 1.19328 1.20403 1.18113 0.89928 0.91390 0.89478 0.84217 0.83572 0.82903 0.88958 0.92501 0.83451 0.92678 0.88919 0.92395 0.92754 0.74484 0.87050 0.87031 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.26 71.24 0.66 -0.65 16 2 C -0.04 -0.49 5.88 -19.87 -0.12 -0.61 16 3 C -0.17 -2.56 9.68 22.31 0.22 -2.34 16 4 C 0.08 1.31 7.30 22.38 0.16 1.48 16 5 F -0.15 -2.91 17.27 44.97 0.78 -2.13 16 6 C -0.17 -2.20 10.03 22.31 0.22 -1.97 16 7 C -0.08 -0.83 9.67 22.26 0.22 -0.62 16 8 C -0.10 -1.18 5.39 -19.86 -0.11 -1.28 16 9 C 0.11 0.89 4.94 85.56 0.42 1.31 16 10 N -0.69 -7.64 5.83 -517.93 -3.02 -10.66 16 11 C 0.06 0.70 5.80 86.30 0.50 1.20 16 12 C 0.12 2.45 5.93 86.38 0.51 2.97 16 13 N -0.71 -16.15 5.56 -463.08 -2.57 -18.73 16 14 C 0.53 19.02 7.85 87.66 0.69 19.71 16 15 O -0.57 -26.16 15.86 -3.03 -0.05 -26.21 16 16 C -0.13 -4.93 6.16 71.23 0.44 -4.49 16 17 S -0.16 -8.55 20.57 -56.49 -1.16 -9.71 16 18 C -0.55 -30.90 9.50 67.96 0.65 -30.25 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 22 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 28 H 0.09 1.04 6.34 -2.38 -0.02 1.03 16 29 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.15 0.87 8.03 -2.91 -0.02 0.84 16 32 H 0.09 0.69 7.28 -2.39 -0.02 0.68 16 33 H 0.06 0.34 8.00 -2.39 -0.02 0.32 16 34 H 0.35 3.96 8.72 -89.69 -0.78 3.18 16 35 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.42 6.23 8.47 -92.71 -0.79 5.44 16 40 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 41 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.62 376.22 0.70 -76.92 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.52 Total: 15.29 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.93 Total: -14.37 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -5.31 Total: -84.96 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -77.62 0.70 -76.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.699 kcal (2) G-P(sol) polarization free energy of solvation -77.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds