Wall clock time and date at job start Sat Apr 11 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35912 * 116.99857 * 2 1 4 4 C 1.38858 * 119.98521 * 0.02562 * 3 2 1 5 5 C 1.38253 * 120.25432 * 180.02562 * 4 3 2 6 6 C 1.37993 * 120.20995 * 359.97438 * 5 4 3 7 7 C 1.39616 * 119.95828 * 0.02562 * 6 5 4 8 8 C 1.47737 * 120.12025 * 180.02562 * 7 6 5 9 9 O 1.21473 * 119.99893 * 174.31473 * 8 7 6 10 10 O 1.34712 * 120.00186 * 354.31201 * 8 7 6 11 11 C 1.45201 * 117.00254 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47320 * 180.02562 * 11 10 8 13 13 C 1.38630 * 119.75171 * 269.72961 * 12 11 10 14 14 C 1.37618 * 120.25264 * 179.72042 * 13 12 11 15 15 C 1.40717 * 119.74334 * 0.56794 * 14 13 12 16 16 C 1.41394 * 120.24619 * 179.68104 * 15 14 13 17 17 H 1.08007 * 120.00048 * 208.45255 * 16 15 14 18 18 C 1.39937 * 119.99912 * 28.45866 * 16 15 14 19 19 N 1.30832 * 120.00299 * 12.37669 * 18 16 15 20 20 Si 1.86807 * 119.99953 * 192.37977 * 18 16 15 21 21 H 1.48495 * 109.47305 * 60.00005 * 20 18 16 22 22 H 1.48505 * 109.47085 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47042 * 299.99682 * 20 18 16 24 24 C 1.40721 * 119.50921 * 359.70222 * 15 14 13 25 25 C 1.37617 * 119.74681 * 0.02562 * 24 15 14 26 26 C 1.38439 * 119.98179 * 180.02562 * 3 2 1 27 27 C 1.50698 * 120.10674 * 0.27610 * 26 3 2 28 28 H 1.08995 * 109.47721 * 59.99875 * 1 2 3 29 29 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46736 * 299.99348 * 1 2 3 31 31 H 1.08005 * 119.87010 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.89272 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.01751 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.46670 * 300.00225 * 11 10 8 35 35 H 1.08992 * 109.47056 * 59.99934 * 11 10 8 36 36 H 1.07998 * 119.87507 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.13354 * 180.27124 * 14 13 12 38 38 H 0.96994 * 120.00124 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.12418 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.87636 * 180.02562 * 25 24 15 41 41 H 1.09002 * 109.47339 * 262.62920 * 27 26 3 42 42 H 1.09002 * 109.47281 * 22.62582 * 27 26 3 43 43 H 1.09003 * 109.47497 * 142.62569 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3753 0.0005 5 6 1.9112 3.6101 0.0000 6 6 3.2886 3.6939 -0.0005 7 6 4.0579 2.5288 -0.0011 8 6 5.5328 2.6144 -0.0011 9 8 6.1998 1.6044 0.1027 10 8 6.1381 3.8123 -0.1162 11 6 7.5901 3.8207 -0.1093 12 6 8.0849 5.2375 -0.2459 13 6 8.3225 5.7647 -1.5059 14 6 8.7690 7.0592 -1.6429 15 6 8.9957 7.8444 -0.4974 16 6 9.4609 9.1735 -0.6256 17 1 10.0550 9.6159 0.1604 18 6 9.1514 9.9157 -1.7709 19 7 8.2428 9.4815 -2.6061 20 14 10.0357 11.5264 -2.1072 21 1 11.4944 11.2749 -2.2261 22 1 9.5303 12.1134 -3.3742 23 1 9.7858 12.4712 -0.9891 24 6 8.7565 7.2970 0.7767 25 6 8.3047 6.0020 0.8896 26 6 3.4285 1.2830 -0.0005 27 6 4.2512 0.0205 -0.0074 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.2109 2.3161 0.0005 32 1 1.3170 4.5120 0.0000 33 1 3.7711 4.6601 -0.0014 34 1 7.9513 3.3989 0.8287 35 1 7.9608 3.2241 -0.9426 36 1 8.1527 5.1586 -2.3834 37 1 8.9494 7.4694 -2.6255 38 1 8.0286 9.9958 -3.4001 39 1 8.9275 7.8906 1.6625 40 1 8.1200 5.5799 1.8664 41 1 4.5607 -0.2171 1.0104 42 1 3.6546 -0.7998 -0.4065 43 1 5.1334 0.1650 -0.6311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127469665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:50 Heat of formation + Delta-G solvation = -82.283850 kcal Electronic energy + Delta-G solvation = -25975.890044 eV Core-core repulsion = 22144.080383 eV Total energy + Delta-G solvation = -3831.809661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78305 -39.74901 -37.82755 -37.32897 -36.06312 -33.83960 -32.82753 -31.16844 -30.41154 -29.37938 -27.87269 -27.37565 -26.81854 -24.32551 -23.25005 -21.83291 -21.08885 -20.67173 -20.04686 -18.46325 -17.37591 -17.06696 -16.23937 -16.17264 -16.12399 -15.88512 -15.73065 -15.32727 -14.38475 -14.08815 -13.93685 -13.88207 -13.47776 -13.36276 -12.88771 -12.57369 -12.43664 -12.28249 -12.22928 -12.16837 -12.02187 -11.86048 -11.70631 -11.35202 -11.16904 -11.13057 -10.99880 -10.81982 -10.44289 -10.14235 -9.95316 -9.67461 -9.44598 -9.26968 -9.10305 -8.34195 -7.56180 -7.41582 -6.81237 -4.47462 0.59880 1.22267 2.39969 2.65168 2.85441 2.99673 3.02855 3.04771 3.07635 3.46376 3.64318 3.87532 4.49928 4.51497 4.63010 4.78139 4.81704 4.89423 5.00082 5.10421 5.17923 5.36868 5.55315 5.60551 5.66916 5.69797 5.73722 5.81796 6.03824 6.05420 6.18795 6.22802 6.24692 6.31456 6.34753 6.48754 6.85684 6.89328 6.99668 7.09346 7.17344 7.26491 7.52358 7.72647 7.96305 7.99642 8.06860 8.20025 8.54654 8.79701 8.86548 10.12587 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002280 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.335762 B =12277.696852 C =13025.093674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.107 3.893 4 C -0.174 4.174 5 C -0.102 4.102 6 C -0.090 4.090 7 C -0.090 4.090 8 C 0.502 3.498 9 O -0.508 6.508 10 O -0.343 6.343 11 C 0.136 3.864 12 C -0.231 4.231 13 C -0.077 4.077 14 C -0.164 4.164 15 C 0.119 3.881 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.793 5.793 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.226 4.226 25 C -0.066 4.066 26 C -0.052 4.052 27 C -0.113 4.113 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.282 0.718 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -12.671 2.584 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.062 3.938 4 C -0.193 4.193 5 C -0.120 4.120 6 C -0.108 4.108 7 C -0.092 4.092 8 C 0.347 3.653 9 O -0.399 6.399 10 O -0.260 6.260 11 C 0.065 3.935 12 C -0.232 4.232 13 C -0.096 4.096 14 C -0.183 4.183 15 C 0.116 3.884 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.418 5.418 20 Si 0.737 3.263 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.246 4.246 25 C -0.085 4.085 26 C -0.053 4.053 27 C -0.169 4.169 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.903 -13.058 2.385 19.223 hybrid contribution -0.039 0.965 -0.194 0.985 sum -13.942 -12.093 2.191 18.586 Atomic orbital electron populations 1.23068 0.78429 1.04000 1.01342 1.86075 1.21182 1.26348 1.88999 1.18538 0.91299 0.84515 0.99425 1.21451 1.00198 0.92314 1.05342 1.20935 0.94400 0.97243 0.99377 1.21519 0.93684 0.98592 0.97026 1.18891 0.90245 0.93326 1.06705 1.21049 0.88611 0.82299 0.73343 1.90753 1.66741 1.36359 1.46096 1.86767 1.25795 1.31268 1.82128 1.21765 0.74171 0.96603 1.01004 1.18697 1.15522 0.94846 0.94152 1.20563 0.98831 0.95603 0.94606 1.21316 1.05409 0.92154 0.99461 1.17700 0.87302 0.92571 0.90828 1.19621 1.29162 0.97197 1.02773 0.90300 1.25946 0.93541 1.00028 0.94973 1.69792 1.23510 1.38038 1.10490 0.86295 0.80595 0.80986 0.78436 1.18795 1.20273 1.18952 1.21017 1.10882 0.95710 0.96967 1.20411 0.98214 0.94144 0.95690 1.19288 0.90742 0.95331 0.99913 1.20921 0.99587 0.92829 1.03539 0.92629 0.88175 0.92632 0.85036 0.84825 0.83718 0.91930 0.91863 0.89248 0.86176 0.90677 0.88668 0.89229 0.90786 0.91792 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.27 9.42 -19.46 -0.18 -3.45 16 3 C 0.11 1.26 6.65 -39.28 -0.26 1.00 16 4 C -0.17 -1.74 9.03 -39.35 -0.36 -2.10 16 5 C -0.10 -1.08 10.03 -39.67 -0.40 -1.48 16 6 C -0.09 -1.19 9.61 -39.16 -0.38 -1.56 16 7 C -0.09 -1.34 5.87 -105.00 -0.62 -1.96 16 8 C 0.50 8.63 7.83 34.61 0.27 8.90 16 9 O -0.51 -9.22 13.14 -19.25 -0.25 -9.47 16 10 O -0.34 -6.44 9.47 -40.52 -0.38 -6.83 16 11 C 0.14 2.60 5.59 36.00 0.20 2.80 16 12 C -0.23 -5.06 5.54 -104.33 -0.58 -5.64 16 13 C -0.08 -1.79 9.67 -39.66 -0.38 -2.18 16 14 C -0.16 -4.19 8.66 -38.87 -0.34 -4.52 16 15 C 0.12 3.10 5.55 -106.82 -0.59 2.51 16 16 C -0.46 -11.85 9.06 -37.75 -0.34 -12.19 16 17 H 0.08 1.95 7.88 -52.48 -0.41 1.53 16 18 C 0.07 1.79 5.22 -17.34 -0.09 1.70 16 19 N -0.79 -20.09 10.91 55.55 0.61 -19.48 16 20 Si 0.91 18.23 29.58 -169.99 -5.03 13.20 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 25 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 26 C -0.05 -0.71 5.93 -104.05 -0.62 -1.33 16 27 C -0.11 -1.48 8.56 36.00 0.31 -1.17 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 0.92 6.28 -52.48 -0.33 0.59 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.15 1.95 7.62 -52.49 -0.40 1.55 16 34 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.12 3.15 6.26 -52.49 -0.33 2.82 16 38 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.75 7.32 -51.93 -0.38 0.37 16 43 H 0.09 1.34 5.90 -51.93 -0.31 1.04 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -28.80 365.44 -9.14 -37.94 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.46 Total: 6.34 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -3.94 Total: -23.75 kcal Atomic # 7 Polarization: -20.09 SS G_CDS: 0.61 Total: -19.48 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.82 Total: -19.75 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.80 -9.14 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127469665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.343 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds