Wall clock time and date at job start Sat Apr 11 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35912 * 116.99857 * 2 1 4 4 C 1.38858 * 119.98521 * 0.02562 * 3 2 1 5 5 C 1.38253 * 120.25432 * 180.02562 * 4 3 2 6 6 C 1.37993 * 120.20995 * 359.97438 * 5 4 3 7 7 C 1.39616 * 119.95828 * 0.02562 * 6 5 4 8 8 C 1.47737 * 120.12025 * 180.02562 * 7 6 5 9 9 O 1.21473 * 119.99893 * 174.31473 * 8 7 6 10 10 O 1.34712 * 120.00186 * 354.31201 * 8 7 6 11 11 C 1.45201 * 117.00254 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47320 * 180.02562 * 11 10 8 13 13 C 1.38630 * 119.75171 * 269.72961 * 12 11 10 14 14 C 1.37618 * 120.25264 * 179.72042 * 13 12 11 15 15 C 1.40717 * 119.74334 * 0.56794 * 14 13 12 16 16 C 1.41394 * 120.24619 * 179.68104 * 15 14 13 17 17 H 1.08007 * 120.00048 * 208.45255 * 16 15 14 18 18 C 1.39937 * 119.99912 * 28.45866 * 16 15 14 19 19 N 1.30832 * 120.00299 * 12.37669 * 18 16 15 20 20 Si 1.86807 * 119.99953 * 192.37977 * 18 16 15 21 21 H 1.48495 * 109.47305 * 60.00005 * 20 18 16 22 22 H 1.48505 * 109.47085 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47042 * 299.99682 * 20 18 16 24 24 C 1.40721 * 119.50921 * 359.70222 * 15 14 13 25 25 C 1.37617 * 119.74681 * 0.02562 * 24 15 14 26 26 C 1.38439 * 119.98179 * 180.02562 * 3 2 1 27 27 C 1.50698 * 120.10674 * 0.27610 * 26 3 2 28 28 H 1.08995 * 109.47721 * 59.99875 * 1 2 3 29 29 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46736 * 299.99348 * 1 2 3 31 31 H 1.08005 * 119.87010 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.89272 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.01751 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.46670 * 300.00225 * 11 10 8 35 35 H 1.08992 * 109.47056 * 59.99934 * 11 10 8 36 36 H 1.07998 * 119.87507 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.13354 * 180.27124 * 14 13 12 38 38 H 0.96994 * 120.00124 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.12418 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.87636 * 180.02562 * 25 24 15 41 41 H 1.09002 * 109.47339 * 262.62920 * 27 26 3 42 42 H 1.09002 * 109.47281 * 22.62582 * 27 26 3 43 43 H 1.09003 * 109.47497 * 142.62569 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3753 0.0005 5 6 1.9112 3.6101 0.0000 6 6 3.2886 3.6939 -0.0005 7 6 4.0579 2.5288 -0.0011 8 6 5.5328 2.6144 -0.0011 9 8 6.1998 1.6044 0.1027 10 8 6.1381 3.8123 -0.1162 11 6 7.5901 3.8207 -0.1093 12 6 8.0849 5.2375 -0.2459 13 6 8.3225 5.7647 -1.5059 14 6 8.7690 7.0592 -1.6429 15 6 8.9957 7.8444 -0.4974 16 6 9.4609 9.1735 -0.6256 17 1 10.0550 9.6159 0.1604 18 6 9.1514 9.9157 -1.7709 19 7 8.2428 9.4815 -2.6061 20 14 10.0357 11.5264 -2.1072 21 1 11.4944 11.2749 -2.2261 22 1 9.5303 12.1134 -3.3742 23 1 9.7858 12.4712 -0.9891 24 6 8.7565 7.2970 0.7767 25 6 8.3047 6.0020 0.8896 26 6 3.4285 1.2830 -0.0005 27 6 4.2512 0.0205 -0.0074 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.2109 2.3161 0.0005 32 1 1.3170 4.5120 0.0000 33 1 3.7711 4.6601 -0.0014 34 1 7.9513 3.3989 0.8287 35 1 7.9608 3.2241 -0.9426 36 1 8.1527 5.1586 -2.3834 37 1 8.9494 7.4694 -2.6255 38 1 8.0286 9.9958 -3.4001 39 1 8.9275 7.8906 1.6625 40 1 8.1200 5.5799 1.8664 41 1 4.5607 -0.2171 1.0104 42 1 3.6546 -0.7998 -0.4065 43 1 5.1334 0.1650 -0.6311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127469665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:50 Heat of formation + Delta-G solvation = -94.865423 kcal Electronic energy + Delta-G solvation = -25976.435622 eV Core-core repulsion = 22144.080383 eV Total energy + Delta-G solvation = -3832.355239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87850 -40.85898 -39.51385 -38.35620 -37.47927 -35.66110 -33.78266 -32.71902 -31.62905 -31.23562 -29.00008 -28.45158 -27.87986 -25.86059 -24.53167 -22.96069 -22.79666 -21.88566 -21.75695 -19.46684 -19.25372 -18.26302 -17.53152 -17.36835 -17.12511 -17.02650 -16.69047 -16.64671 -15.95735 -15.62328 -15.51951 -14.90519 -14.59672 -14.50524 -14.27599 -13.96230 -13.84715 -13.77945 -13.57252 -13.30561 -13.21843 -13.08791 -12.83044 -12.73659 -12.69286 -12.58244 -12.11448 -12.04928 -11.93351 -11.68906 -11.55258 -11.28075 -11.17975 -11.05081 -10.05519 -9.43882 -9.30216 -9.22422 -8.64029 -6.41278 -0.42496 0.30748 0.70804 1.09904 1.38846 1.43965 1.46436 1.51295 1.79721 2.20531 2.39724 2.65174 2.75639 3.55546 3.67523 3.74695 3.94763 3.98521 4.07451 4.10531 4.17901 4.34561 4.43283 4.44341 4.47059 4.53503 4.54806 4.66310 4.75401 4.75944 4.80473 5.00113 5.12763 5.15297 5.17176 5.28504 5.30215 5.32795 5.38847 5.47595 5.65213 5.65539 5.86882 6.05834 6.12935 6.32027 6.34771 6.64442 6.70212 6.89320 6.96484 8.32257 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002280 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.335762 B =12277.696852 C =13025.093674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.108 3.892 4 C -0.160 4.160 5 C -0.094 4.094 6 C -0.104 4.104 7 C -0.112 4.112 8 C 0.500 3.500 9 O -0.523 6.523 10 O -0.354 6.354 11 C 0.141 3.859 12 C -0.224 4.224 13 C -0.082 4.082 14 C -0.186 4.186 15 C 0.087 3.913 16 C -0.494 4.494 17 H 0.080 0.920 18 C 0.032 3.968 19 N -0.826 5.826 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.240 4.240 25 C -0.067 4.067 26 C -0.072 4.072 27 C -0.106 4.106 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.289 0.711 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.475 -13.086 2.978 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.062 3.938 4 C -0.179 4.179 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.113 4.113 8 C 0.347 3.653 9 O -0.415 6.415 10 O -0.271 6.271 11 C 0.068 3.932 12 C -0.225 4.225 13 C -0.101 4.101 14 C -0.206 4.206 15 C 0.085 3.915 16 C -0.523 4.523 17 H 0.098 0.902 18 C -0.183 4.183 19 N -0.452 5.452 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.259 4.259 25 C -0.085 4.085 26 C -0.073 4.073 27 C -0.162 4.162 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.187 0.813 32 H 0.182 0.818 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.291 -13.497 2.788 21.339 hybrid contribution 0.502 0.886 -0.275 1.055 sum -15.788 -12.612 2.513 20.363 Atomic orbital electron populations 1.23432 0.75976 1.05882 1.02637 1.86066 1.23689 1.25743 1.88668 1.18613 0.90743 0.85782 0.98629 1.21858 1.01980 0.91163 1.02875 1.21280 0.93342 0.98872 0.97632 1.21559 0.95032 0.97569 0.98042 1.18831 0.88661 0.94612 1.09243 1.21505 0.89696 0.81410 0.72655 1.90742 1.67323 1.36514 1.46970 1.86722 1.25229 1.32479 1.82678 1.21626 0.74759 0.94709 1.02061 1.18989 1.13986 0.96009 0.93545 1.20787 0.98228 0.95044 0.96009 1.21279 1.07232 0.93280 0.98802 1.18059 0.88312 0.93313 0.91815 1.19883 1.30564 0.97768 1.04102 0.90214 1.26815 0.93785 1.03507 0.94199 1.69855 1.24570 1.39696 1.11061 0.85185 0.79164 0.76365 0.78604 1.18440 1.19237 1.18290 1.21227 1.11216 0.96784 0.96670 1.20725 0.97116 0.93520 0.97183 1.19385 0.92061 0.94765 1.01094 1.20805 0.99046 0.93414 1.02911 0.91285 0.86271 0.91207 0.81303 0.81805 0.84711 0.90629 0.91163 0.87625 0.87774 0.90032 0.87766 0.86378 0.91208 0.90599 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.01 9.42 -92.55 -0.87 -6.88 16 3 C 0.11 2.30 6.65 22.47 0.15 2.45 16 4 C -0.16 -2.63 9.03 22.42 0.20 -2.43 16 5 C -0.09 -1.72 10.03 22.22 0.22 -1.50 16 6 C -0.10 -2.64 9.61 22.54 0.22 -2.43 16 7 C -0.11 -3.32 5.87 -20.11 -0.12 -3.44 16 8 C 0.50 17.36 7.83 70.33 0.55 17.91 16 9 O -0.52 -19.22 13.14 19.92 0.26 -18.96 16 10 O -0.35 -13.31 9.47 -56.21 -0.53 -13.84 16 11 C 0.14 5.28 5.59 71.23 0.40 5.68 16 12 C -0.22 -9.79 5.54 -19.68 -0.11 -9.90 16 13 C -0.08 -3.88 9.67 22.22 0.21 -3.66 16 14 C -0.19 -9.87 8.66 22.73 0.20 -9.67 16 15 C 0.09 4.72 5.55 -21.29 -0.12 4.60 16 16 C -0.49 -26.36 9.06 23.46 0.21 -26.14 16 17 H 0.08 4.06 7.88 -2.91 -0.02 4.04 16 18 C 0.03 1.58 5.22 85.25 0.45 2.03 16 19 N -0.83 -43.00 10.91 21.83 0.24 -42.76 16 20 Si 0.99 37.67 29.58 68.60 2.03 39.70 16 21 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 24 C -0.24 -11.72 9.80 22.73 0.22 -11.49 16 25 C -0.07 -2.96 9.67 22.22 0.21 -2.75 16 26 C -0.07 -1.93 5.93 -19.49 -0.12 -2.04 16 27 C -0.11 -2.78 8.56 71.24 0.61 -2.17 16 28 H 0.07 0.41 7.66 -2.39 -0.02 0.40 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 31 H 0.17 1.47 6.28 -2.91 -0.02 1.45 16 32 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.13 3.64 7.62 -2.91 -0.02 3.61 16 34 H 0.08 2.64 8.08 -2.38 -0.02 2.62 16 35 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.10 5.75 6.26 -2.91 -0.02 5.73 16 38 H 0.29 13.61 8.30 -92.71 -0.77 12.85 16 39 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 1.74 7.32 -2.39 -0.02 1.72 16 43 H 0.07 2.19 5.90 -2.39 -0.01 2.18 16 Total: -1.00 -64.47 365.44 6.66 -57.81 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 1.03 Total: 28.64 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 4.51 Total: -43.71 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.24 Total: -42.76 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.14 Total: -39.68 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -64.47 6.66 -57.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127469665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.057 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds