Wall clock time and date at job start Sat Apr 11 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31927 * 119.01989 * 2 1 4 4 C 1.32138 * 121.05702 * 179.97438 * 3 2 1 5 5 C 1.38993 * 119.12430 * 359.74624 * 4 3 2 6 6 Cl 1.73599 * 120.89004 * 180.25518 * 5 4 3 7 7 C 1.39636 * 118.22421 * 0.51531 * 5 4 3 8 8 C 1.48374 * 120.56085 * 179.76391 * 7 5 4 9 9 O 1.21489 * 119.99832 * 359.71972 * 8 7 5 10 10 N 1.34779 * 119.99597 * 179.71841 * 8 7 5 11 11 C 1.46496 * 119.99550 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47509 * 324.99724 * 11 10 8 13 13 C 1.52999 * 109.47410 * 85.00095 * 11 10 8 14 14 C 1.52998 * 109.47164 * 205.00192 * 11 10 8 15 15 C 1.52998 * 109.47384 * 64.99625 * 14 11 10 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 11 17 17 C 1.52995 * 109.47443 * 185.00170 * 15 14 11 18 18 N 1.46498 * 109.47009 * 65.00045 * 15 14 11 19 19 C 1.36935 * 120.00239 * 204.99963 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 N 1.31523 * 119.01459 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47153 * 269.97934 * 1 2 3 29 29 H 1.09002 * 109.46923 * 29.97852 * 1 2 3 30 30 H 1.09002 * 109.47326 * 149.97950 * 1 2 3 31 31 H 1.07999 * 120.43621 * 180.02562 * 4 3 2 32 32 H 0.96994 * 120.00258 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.47191 * 299.99550 * 13 11 10 34 34 H 1.08996 * 109.47126 * 60.00048 * 13 11 10 35 35 H 1.09004 * 109.47346 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.46877 * 305.00014 * 14 11 10 37 37 H 1.08999 * 109.47306 * 185.00166 * 14 11 10 38 38 H 1.09004 * 109.47411 * 179.97438 * 17 15 14 39 39 H 1.08996 * 109.47329 * 300.00343 * 17 15 14 40 40 H 1.09003 * 109.46933 * 60.00266 * 17 15 14 41 41 H 0.97004 * 119.99747 * 25.00702 * 18 15 14 42 42 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1536 0.0000 4 6 3.4676 1.2006 0.0005 5 6 4.1868 0.0112 0.0064 6 17 5.9228 0.0195 0.0140 7 6 3.4757 -1.1905 0.0005 8 6 4.1911 -2.4904 0.0012 9 8 5.4058 -2.5152 0.0017 10 7 3.4934 -3.6435 0.0012 11 6 4.1997 -4.9269 0.0024 12 1 5.1129 -4.8397 -0.5865 13 6 4.5547 -5.3125 1.4398 14 6 3.3008 -6.0044 -0.6075 15 6 3.0476 -5.6830 -2.0817 16 1 2.6397 -4.6760 -2.1692 17 6 2.0501 -6.6892 -2.6591 18 7 4.3086 -5.7652 -2.8229 19 6 4.4675 -5.0575 -3.9844 20 1 3.6634 -4.4384 -4.3539 21 6 5.6621 -5.1358 -4.6870 22 7 6.6441 -5.8861 -4.2339 23 14 5.8792 -4.1698 -6.2711 24 1 7.2365 -4.4178 -6.8201 25 1 4.8587 -4.6034 -7.2590 26 1 5.7148 -2.7204 -5.9933 27 7 2.1450 -1.1502 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 3.9812 2.1506 0.0009 32 1 2.5237 -3.6236 0.0012 33 1 5.1952 -4.5449 1.8743 34 1 3.6416 -5.3998 2.0286 35 1 5.0798 -6.2677 1.4407 36 1 2.3512 -6.0304 -0.0731 37 1 3.7903 -6.9749 -0.5260 38 1 1.8694 -6.4599 -3.7093 39 1 2.4579 -7.6962 -2.5716 40 1 1.1119 -6.6279 -2.1076 41 1 5.0309 -6.3211 -2.4910 42 1 6.5316 -6.3874 -3.4112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135618233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:59 Heat of formation + Delta-G solvation = -5.804991 kcal Electronic energy + Delta-G solvation = -25958.108106 eV Core-core repulsion = 22191.767470 eV Total energy + Delta-G solvation = -3766.340636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54010 -40.75813 -38.53538 -37.84364 -36.32697 -35.31645 -34.18793 -34.11106 -31.97653 -30.17999 -29.43568 -27.70846 -27.05019 -25.55885 -24.47745 -22.80259 -21.93754 -21.37165 -19.80407 -19.40541 -18.87288 -17.36037 -17.24692 -16.96124 -16.75315 -16.25973 -16.02826 -15.74746 -15.49112 -15.05654 -14.68506 -14.60711 -14.47699 -13.97950 -13.58820 -13.48824 -13.30864 -13.18307 -12.96481 -12.90026 -12.80927 -12.63027 -12.59411 -12.49411 -12.22657 -12.14399 -11.93198 -11.89391 -11.60584 -11.44480 -11.19148 -10.92187 -10.42401 -10.40780 -10.09132 -9.05800 -8.35092 -5.26468 -0.92910 -0.47671 0.77671 1.50844 1.54327 1.61171 1.76927 1.79037 2.44070 2.56602 2.69165 2.77507 3.17596 3.36123 3.43226 3.68655 3.78598 3.86331 4.01808 4.24368 4.28125 4.44117 4.59330 4.70033 4.71399 4.71536 4.75347 4.77420 4.82629 4.92977 5.00627 5.12072 5.22606 5.24806 5.30083 5.37054 5.48215 5.52644 5.62478 6.34936 6.53722 6.64249 7.03673 7.15430 8.06334 8.16454 9.17186 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004502 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.065461 B = 6218.236347 C = 6904.568031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.311 3.689 3 N -0.495 5.495 4 C 0.181 3.819 5 C -0.124 4.124 6 Cl -0.011 7.011 7 C 0.134 3.866 8 C 0.554 3.446 9 O -0.536 6.536 10 N -0.681 5.681 11 C 0.146 3.854 12 H 0.051 0.949 13 C -0.150 4.150 14 C -0.119 4.119 15 C 0.169 3.831 16 H 0.036 0.964 17 C -0.154 4.154 18 N -0.742 5.742 19 C -0.315 4.315 20 H 0.056 0.944 21 C -0.105 4.105 22 N -0.976 5.976 23 Si 1.116 2.884 24 H -0.292 1.292 25 H -0.275 1.275 26 H -0.288 1.288 27 N -0.487 5.487 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.219 0.781 32 H 0.415 0.585 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.026 0.974 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.358 0.642 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.720 11.687 14.653 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.210 5.210 4 C 0.012 3.988 5 C -0.157 4.157 6 Cl 0.018 6.982 7 C -0.014 4.014 8 C 0.336 3.664 9 O -0.411 6.411 10 N -0.332 5.332 11 C 0.042 3.958 12 H 0.069 0.931 13 C -0.209 4.209 14 C -0.157 4.157 15 C 0.061 3.939 16 H 0.054 0.946 17 C -0.214 4.214 18 N -0.384 5.384 19 C -0.447 4.447 20 H 0.074 0.926 21 C -0.297 4.297 22 N -0.625 5.625 23 Si 0.943 3.057 24 H -0.218 1.218 25 H -0.201 1.201 26 H -0.215 1.215 27 N -0.205 5.205 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.236 0.764 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.190 0.810 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.840 12.072 13.335 22.696 hybrid contribution 0.426 -0.628 1.003 1.258 sum -13.414 11.444 14.338 22.727 Atomic orbital electron populations 1.20825 0.81662 1.05827 1.05825 1.24231 1.00308 0.82297 0.88646 1.68461 1.08926 1.30218 1.13388 1.23972 0.89086 0.97749 0.88025 1.23081 0.89643 0.96606 1.06392 1.98447 1.05133 1.98627 1.96008 1.21571 0.90504 0.93864 0.95444 1.17985 0.86632 0.83838 0.77901 1.90882 1.13698 1.86947 1.49576 1.45724 1.10993 1.04563 1.71955 1.20966 0.95680 0.81970 0.97175 0.93110 1.22084 1.02438 1.01650 0.94690 1.22101 1.00967 0.97851 0.94765 1.20436 0.86171 0.96679 0.90630 0.94619 1.22277 0.99513 0.99507 1.00124 1.42580 1.13932 1.55667 1.26266 1.20199 1.00653 1.22452 1.01410 0.92616 1.26905 0.92582 1.02844 1.07337 1.70974 1.34166 1.33395 1.23969 0.82768 0.75864 0.74405 0.72711 1.21777 1.20093 1.21498 1.68350 1.06485 1.31931 1.13756 0.87107 0.87790 0.88363 0.76409 0.74713 0.94024 0.89986 0.90596 0.87463 0.89953 0.95441 0.93707 0.90368 0.81050 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.31 71.24 0.73 -0.23 16 2 C 0.31 6.44 7.64 138.79 1.06 7.50 16 3 N -0.50 -10.22 10.31 -187.76 -1.94 -12.16 16 4 C 0.18 3.68 11.14 84.83 0.94 4.62 16 5 C -0.12 -3.38 6.40 22.79 0.15 -3.24 16 6 Cl -0.01 -0.33 26.25 -2.72 -0.07 -0.40 16 7 C 0.13 4.05 6.80 41.98 0.29 4.34 16 8 C 0.55 19.68 7.79 86.94 0.68 20.35 16 9 O -0.54 -22.81 13.81 -3.68 -0.05 -22.86 16 10 N -0.68 -20.96 4.44 -444.91 -1.98 -22.93 16 11 C 0.15 4.69 2.52 44.99 0.11 4.81 16 12 H 0.05 2.22 7.05 -2.39 -0.02 2.20 16 13 C -0.15 -3.88 9.48 71.98 0.68 -3.20 16 14 C -0.12 -3.38 4.29 30.59 0.13 -3.25 16 15 C 0.17 6.36 2.84 44.99 0.13 6.48 16 16 H 0.04 1.43 7.56 -2.39 -0.02 1.41 16 17 C -0.15 -5.18 9.49 71.98 0.68 -4.50 16 18 N -0.74 -37.20 4.49 -322.95 -1.45 -38.65 16 19 C -0.32 -18.18 9.93 84.03 0.83 -17.35 16 20 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 21 C -0.11 -6.36 5.50 84.86 0.47 -5.89 16 22 N -0.98 -63.33 13.70 21.65 0.30 -63.03 16 23 Si 1.12 55.05 29.92 68.60 2.05 57.10 16 24 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 N -0.49 -12.32 9.59 -177.04 -1.70 -14.02 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.22 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.42 10.71 7.99 -92.71 -0.74 9.97 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.36 18.94 6.63 -92.71 -0.61 18.33 16 42 H 0.24 15.71 6.77 -92.71 -0.63 15.08 16 Total: -1.00 -77.81 369.41 1.90 -75.92 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.16 Total: 30.59 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.89 Total: 10.45 kcal Atomic # 7 Polarization: -144.02 SS G_CDS: -6.76 Total: -150.79 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 55.05 SS G_CDS: 2.05 Total: 57.10 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.07 Total: -0.40 kcal Total: -77.81 1.90 -75.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135618233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.110 kcal (2) G-P(sol) polarization free energy of solvation -77.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds