Wall clock time and date at job start Sat Apr 11 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00275 * 2 1 4 4 H 1.48499 * 109.47351 * 270.00495 * 3 2 1 5 5 H 1.48506 * 109.46917 * 30.00014 * 3 2 1 6 6 H 1.48500 * 109.47316 * 150.00142 * 3 2 1 7 7 C 1.38804 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99655 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00080 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00125 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46700 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 16 20 20 C 1.38241 * 119.97516 * 269.72936 * 19 18 17 21 21 C 1.38204 * 120.02528 * 179.72613 * 20 19 18 22 22 C 1.38462 * 119.97302 * 0.56901 * 21 20 19 23 23 F 1.35097 * 120.02586 * 179.68442 * 22 21 20 24 24 C 1.38458 * 119.94664 * 359.70089 * 22 21 20 25 25 C 1.38200 * 119.97456 * 0.02562 * 24 22 21 26 26 H 0.97002 * 120.00199 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47463 * 59.99871 * 10 9 7 28 28 H 1.09005 * 109.47601 * 300.00003 * 10 9 7 29 29 H 0.97006 * 119.99601 * 359.97438 * 13 11 10 30 30 H 1.08993 * 109.46962 * 59.99400 * 14 13 11 31 31 H 1.09005 * 109.46850 * 300.00153 * 14 13 11 32 32 H 1.08995 * 109.47485 * 60.00430 * 15 14 13 33 33 H 1.08996 * 109.47010 * 299.99222 * 15 14 13 34 34 H 1.09004 * 109.46889 * 60.00145 * 16 15 14 35 35 H 1.08995 * 109.47384 * 299.99786 * 16 15 14 36 36 H 1.00901 * 111.00067 * 303.95263 * 17 16 15 37 37 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 38 38 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 39 39 H 1.08003 * 119.98813 * 359.97374 * 20 19 18 40 40 H 1.07999 * 120.01229 * 180.25020 * 21 20 19 41 41 H 1.07998 * 120.01030 * 179.97438 * 24 22 21 42 42 H 1.08000 * 119.98396 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7152 -0.0008 15 6 3.5023 -8.6986 -0.0009 16 6 2.9657 -10.1314 -0.0003 17 7 4.0910 -11.0757 -0.0011 18 6 3.6127 -12.4647 -0.0012 19 6 4.7925 -13.4022 -0.0013 20 6 5.3297 -13.8363 -1.1988 21 6 6.4153 -14.6916 -1.2002 22 6 6.9574 -15.1231 -0.0014 23 9 8.0146 -15.9643 -0.0015 24 6 6.4150 -14.6921 1.1974 25 6 5.3331 -13.8323 1.1962 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 -0.0004 30 1 1.7219 -7.8753 -0.8909 31 1 1.7213 -7.8751 0.8890 32 1 4.1109 -8.5386 0.8890 33 1 4.1107 -8.5385 -0.8910 34 1 2.3568 -10.2917 -0.8901 35 1 2.3574 -10.2913 0.8899 36 1 4.7056 -10.9052 -0.7830 37 1 3.0090 -12.6411 0.8891 38 1 3.0082 -12.6407 -0.8909 39 1 4.9034 -13.5037 -2.1338 40 1 6.8373 -15.0274 -2.1359 41 1 6.8368 -15.0284 2.1330 42 1 4.9101 -13.4957 2.1312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154802888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:14 Heat of formation + Delta-G solvation = -69.947268 kcal Electronic energy + Delta-G solvation = -22586.256148 eV Core-core repulsion = 18799.257838 eV Total energy + Delta-G solvation = -3786.998309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.34085 -39.76816 -39.17878 -37.10057 -34.95743 -32.52819 -32.42437 -31.65069 -30.58374 -28.87838 -26.04773 -25.45149 -23.80916 -23.55228 -22.02833 -21.56586 -20.27964 -18.16059 -17.82729 -17.08502 -16.58981 -16.22249 -16.14990 -16.02425 -15.98351 -15.30341 -14.89659 -14.80127 -14.72260 -14.32550 -14.08251 -13.96159 -13.76301 -13.29882 -13.12178 -12.76029 -12.63526 -12.57407 -12.16136 -11.87174 -11.77686 -11.65754 -11.49732 -11.14321 -11.06011 -11.02298 -10.75934 -9.81559 -9.62333 -9.41137 -9.18544 -9.07006 -8.90882 -8.85784 -8.23543 -6.49968 -6.21624 -3.92185 0.59156 0.72394 2.96023 3.06558 3.10384 3.22447 3.28046 3.32156 3.65050 3.77433 3.90334 4.17656 4.20607 4.24444 4.40244 4.62497 4.65863 4.73544 4.80862 4.86024 5.05162 5.11119 5.13594 5.21030 5.24311 5.38222 5.39147 5.49372 5.50715 5.61439 5.65252 5.71041 5.85144 5.92346 5.96603 5.99758 6.14386 6.35600 6.46349 6.62924 6.85252 7.59667 7.71187 8.35308 8.61704 9.23723 10.85845 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.036421 B = 0.001346 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.601867 B =20794.169144 C =21234.601336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.739 5.739 14 C 0.123 3.877 15 C -0.128 4.128 16 C 0.061 3.939 17 N -0.685 5.685 18 C 0.098 3.902 19 C -0.093 4.093 20 C -0.085 4.085 21 C -0.154 4.154 22 C 0.097 3.903 23 F -0.141 7.141 24 C -0.155 4.155 25 C -0.067 4.067 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.343 0.657 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 -30.867 -0.724 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.068 4.068 17 N -0.316 5.316 18 C -0.031 4.031 19 C -0.094 4.094 20 C -0.104 4.104 21 C -0.173 4.173 22 C 0.077 3.923 23 F -0.120 7.120 24 C -0.173 4.173 25 C -0.086 4.086 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.161 0.839 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.142 -31.102 -0.034 33.037 hybrid contribution 2.410 1.057 -0.948 2.798 sum 13.552 -30.045 -0.982 32.974 Atomic orbital electron populations 1.70018 1.05961 1.27452 1.46870 1.24990 0.95021 0.99021 0.94522 0.86166 0.79415 0.81562 0.78343 1.20277 1.20742 1.19696 1.22875 0.94922 0.91665 1.58956 0.90917 1.85393 1.04988 0.96340 1.96720 1.23532 1.06547 0.95398 1.04938 1.20318 0.86526 0.86322 0.75134 1.90700 1.15400 1.85644 1.47535 1.45986 1.09964 1.05493 1.77963 1.21176 0.95877 0.80789 1.02375 1.21738 0.98137 0.93352 1.03445 1.21881 0.92434 0.91119 1.01384 1.60502 1.18947 1.01790 1.50384 1.20875 0.93415 0.86871 1.01930 1.19853 0.98095 0.98405 0.93053 1.20944 0.95051 0.96261 0.98106 1.21135 0.98371 1.00595 0.97206 1.17776 0.86896 0.92807 0.94796 1.91507 1.54257 1.68758 1.97448 1.21200 0.98466 1.00472 0.97202 1.20939 0.94397 0.94891 0.98376 0.92185 0.89188 0.89237 0.76788 0.91790 0.91544 0.90245 0.91369 0.94606 0.90316 0.83936 0.89705 0.93912 0.85169 0.84730 0.84650 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.87 7.85 -10.98 -0.09 9.78 16 12 O -0.52 -11.79 15.86 5.56 0.09 -11.71 16 13 N -0.74 -9.59 5.56 -60.29 -0.33 -9.92 16 14 C 0.12 1.33 5.67 -4.04 -0.02 1.30 16 15 C -0.13 -0.93 5.59 -26.73 -0.15 -1.08 16 16 C 0.06 0.39 5.69 -3.82 -0.02 0.37 16 17 N -0.69 -4.12 6.49 -115.05 -0.75 -4.87 16 18 C 0.10 0.51 5.81 -4.97 -0.03 0.48 16 19 C -0.09 -0.54 5.39 -104.62 -0.56 -1.10 16 20 C -0.09 -0.46 9.70 -39.59 -0.38 -0.84 16 21 C -0.15 -0.94 10.03 -39.51 -0.40 -1.34 16 22 C 0.10 0.71 7.30 -39.42 -0.29 0.42 16 23 F -0.14 -1.19 17.27 2.25 0.04 -1.15 16 24 C -0.15 -0.98 10.03 -39.51 -0.40 -1.38 16 25 C -0.07 -0.40 9.70 -39.59 -0.38 -0.78 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 29 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.34 1.88 8.72 -39.29 -0.34 1.53 16 37 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -34.79 380.59 -10.17 -44.96 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.15 Total: -0.09 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.30 Total: -10.00 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: -0.35 Total: -40.22 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.79 -10.17 -44.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.990 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds