Wall clock time and date at job start Sat Apr 11 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00275 * 2 1 4 4 H 1.48499 * 109.47351 * 270.00495 * 3 2 1 5 5 H 1.48506 * 109.46917 * 30.00014 * 3 2 1 6 6 H 1.48500 * 109.47316 * 150.00142 * 3 2 1 7 7 C 1.38804 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99655 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00080 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00125 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46700 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 16 20 20 C 1.38241 * 119.97516 * 269.72936 * 19 18 17 21 21 C 1.38204 * 120.02528 * 179.72613 * 20 19 18 22 22 C 1.38462 * 119.97302 * 0.56901 * 21 20 19 23 23 F 1.35097 * 120.02586 * 179.68442 * 22 21 20 24 24 C 1.38458 * 119.94664 * 359.70089 * 22 21 20 25 25 C 1.38200 * 119.97456 * 0.02562 * 24 22 21 26 26 H 0.97002 * 120.00199 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47463 * 59.99871 * 10 9 7 28 28 H 1.09005 * 109.47601 * 300.00003 * 10 9 7 29 29 H 0.97006 * 119.99601 * 359.97438 * 13 11 10 30 30 H 1.08993 * 109.46962 * 59.99400 * 14 13 11 31 31 H 1.09005 * 109.46850 * 300.00153 * 14 13 11 32 32 H 1.08995 * 109.47485 * 60.00430 * 15 14 13 33 33 H 1.08996 * 109.47010 * 299.99222 * 15 14 13 34 34 H 1.09004 * 109.46889 * 60.00145 * 16 15 14 35 35 H 1.08995 * 109.47384 * 299.99786 * 16 15 14 36 36 H 1.00901 * 111.00067 * 303.95263 * 17 16 15 37 37 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 38 38 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 39 39 H 1.08003 * 119.98813 * 359.97374 * 20 19 18 40 40 H 1.07999 * 120.01229 * 180.25020 * 21 20 19 41 41 H 1.07998 * 120.01030 * 179.97438 * 24 22 21 42 42 H 1.08000 * 119.98396 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7152 -0.0008 15 6 3.5023 -8.6986 -0.0009 16 6 2.9657 -10.1314 -0.0003 17 7 4.0910 -11.0757 -0.0011 18 6 3.6127 -12.4647 -0.0012 19 6 4.7925 -13.4022 -0.0013 20 6 5.3297 -13.8363 -1.1988 21 6 6.4153 -14.6916 -1.2002 22 6 6.9574 -15.1231 -0.0014 23 9 8.0146 -15.9643 -0.0015 24 6 6.4150 -14.6921 1.1974 25 6 5.3331 -13.8323 1.1962 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 -0.0004 30 1 1.7219 -7.8753 -0.8909 31 1 1.7213 -7.8751 0.8890 32 1 4.1109 -8.5386 0.8890 33 1 4.1107 -8.5385 -0.8910 34 1 2.3568 -10.2917 -0.8901 35 1 2.3574 -10.2913 0.8899 36 1 4.7056 -10.9052 -0.7830 37 1 3.0090 -12.6411 0.8891 38 1 3.0082 -12.6407 -0.8909 39 1 4.9034 -13.5037 -2.1338 40 1 6.8373 -15.0274 -2.1359 41 1 6.8368 -15.0284 2.1330 42 1 4.9101 -13.4957 2.1312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:14 Heat of formation + Delta-G solvation = -93.748951 kcal Electronic energy + Delta-G solvation = -22587.288266 eV Core-core repulsion = 18799.257838 eV Total energy + Delta-G solvation = -3788.030428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.90470 -40.59804 -40.17971 -37.72862 -35.96255 -34.57764 -33.32124 -32.07318 -31.52379 -30.04452 -27.68607 -26.62675 -24.48294 -23.99091 -22.61896 -22.12282 -21.63357 -19.80713 -18.64693 -17.79761 -17.55011 -17.28266 -17.03739 -16.87050 -16.77211 -16.60835 -16.21476 -15.89355 -15.50356 -15.32352 -15.00028 -14.66160 -14.49348 -14.42713 -14.28565 -13.97307 -13.54927 -13.27604 -13.15725 -13.02866 -12.87643 -12.74496 -12.58343 -12.40462 -12.21696 -11.93887 -11.78471 -11.71574 -11.13503 -10.95002 -10.26859 -10.09697 -10.05084 -9.65475 -9.32660 -8.66049 -8.33952 -6.12108 0.12472 0.29788 1.28216 1.43357 1.48262 1.58709 1.62672 2.26563 2.30643 2.57636 3.00337 3.29704 3.31513 3.36380 3.77032 3.82855 3.96107 3.99343 4.05645 4.16331 4.25714 4.29695 4.32280 4.35385 4.52660 4.56747 4.65130 4.72905 4.73802 4.82875 5.00461 5.06391 5.18109 5.19877 5.22546 5.28193 5.42692 5.48090 5.57146 5.91615 6.02157 6.20609 6.43926 6.53571 7.07439 7.26607 8.75332 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.036421 B = 0.001346 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.601867 B =20794.169144 C =21234.601336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.713 5.713 14 C 0.121 3.879 15 C -0.113 4.113 16 C 0.065 3.935 17 N -0.689 5.689 18 C 0.100 3.900 19 C -0.095 4.095 20 C -0.085 4.085 21 C -0.159 4.159 22 C 0.072 3.928 23 F -0.153 7.153 24 C -0.161 4.161 25 C -0.074 4.074 26 H 0.271 0.729 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.417 0.583 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.347 0.653 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.298 -31.044 -1.013 34.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.367 5.367 14 C -0.003 4.003 15 C -0.151 4.151 16 C -0.064 4.064 17 N -0.321 5.321 18 C -0.028 4.028 19 C -0.096 4.096 20 C -0.104 4.104 21 C -0.178 4.178 22 C 0.053 3.947 23 F -0.132 7.132 24 C -0.180 4.180 25 C -0.092 4.092 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.254 0.746 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.280 -31.323 -0.325 34.023 hybrid contribution 1.798 0.970 -0.858 2.216 sum 15.078 -30.352 -1.183 33.912 Atomic orbital electron populations 1.70183 1.07994 1.28608 1.48009 1.26123 0.95948 1.03304 0.93702 0.84951 0.78200 0.76012 0.78794 1.19300 1.20319 1.18193 1.23218 0.95378 0.92014 1.58899 0.89868 1.85575 1.10698 0.99297 1.97060 1.23380 1.03499 0.94388 1.06850 1.20083 0.86253 0.86779 0.75157 1.90689 1.17501 1.86165 1.50301 1.45751 1.10337 1.05224 1.75372 1.21328 0.97346 0.79986 1.01636 1.21599 0.96548 0.92718 1.04245 1.21794 0.92560 0.90631 1.01457 1.60468 1.18808 1.02029 1.50755 1.20869 0.93226 0.86268 1.02457 1.19988 0.98119 0.98326 0.93151 1.21175 0.94610 0.95722 0.98872 1.21346 0.98557 1.00572 0.97329 1.18073 0.87267 0.93568 0.95768 1.91472 1.54899 1.69264 1.97543 1.21370 0.98672 1.00549 0.97399 1.21128 0.94262 0.94774 0.99082 0.91996 0.87186 0.87137 0.74591 0.92478 0.92489 0.89907 0.90024 0.94301 0.90627 0.83445 0.89547 0.93055 0.83253 0.83597 0.83768 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.55 -31.17 9.50 67.96 0.65 -30.52 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 11 C 0.53 19.28 7.85 87.66 0.69 19.97 16 12 O -0.57 -26.20 15.86 -3.03 -0.05 -26.24 16 13 N -0.71 -16.92 5.56 -463.06 -2.57 -19.50 16 14 C 0.12 2.41 5.67 86.38 0.49 2.90 16 15 C -0.11 -1.32 5.59 30.59 0.17 -1.15 16 16 C 0.07 0.68 5.69 86.30 0.49 1.17 16 17 N -0.69 -6.54 6.49 -517.92 -3.36 -9.90 16 18 C 0.10 0.82 5.81 85.55 0.50 1.32 16 19 C -0.10 -0.92 5.39 -19.86 -0.11 -1.03 16 20 C -0.09 -0.76 9.70 22.26 0.22 -0.55 16 21 C -0.16 -1.78 10.03 22.32 0.22 -1.56 16 22 C 0.07 1.03 7.30 22.38 0.16 1.20 16 23 F -0.15 -2.60 17.27 44.97 0.78 -1.82 16 24 C -0.16 -1.94 10.03 22.31 0.22 -1.72 16 25 C -0.07 -0.77 9.70 22.26 0.22 -0.56 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 28 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.42 6.92 8.47 -92.70 -0.79 6.14 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.35 2.82 8.72 -89.69 -0.78 2.04 16 37 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 38 H 0.05 0.35 8.08 -2.39 -0.02 0.33 16 39 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 42 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -77.29 380.59 0.24 -77.05 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -0.53 Total: 14.24 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.82 Total: -13.90 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -5.65 Total: -85.05 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -77.29 0.24 -77.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.695 kcal (2) G-P(sol) polarization free energy of solvation -77.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds