Wall clock time and date at job start Sat Apr 11 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40544 * 120.12708 * 2 1 4 4 C 1.34961 * 120.36699 * 180.02562 * 3 2 1 5 5 N 1.36384 * 120.50584 * 359.73498 * 4 3 2 6 6 C 1.37343 * 120.45261 * 0.53345 * 5 4 3 7 7 C 1.36017 * 120.12584 * 180.02562 * 2 1 3 8 8 N 1.32308 * 106.83183 * 179.69202 * 6 5 4 9 9 N 1.28681 * 109.48790 * 359.75785 * 8 6 5 10 10 C 1.30814 * 110.28845 * 0.02562 * 9 8 6 11 11 C 1.50697 * 126.24507 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47111 * 90.02950 * 11 10 9 13 13 C 1.39891 * 120.00297 * 180.02562 * 12 11 10 14 14 C 1.39094 * 119.95568 * 359.97088 * 13 12 11 15 15 C 1.38619 * 120.46371 * 180.02562 * 14 13 12 16 16 C 1.37575 * 120.39056 * 0.02562 * 15 14 13 17 17 C 1.40794 * 119.90587 * 359.97438 * 16 15 14 18 18 C 1.41322 * 120.23088 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99881 * 154.74645 * 18 17 16 20 20 C 1.39919 * 119.99565 * 334.74394 * 18 17 16 21 21 N 1.30848 * 120.00684 * 342.85821 * 20 18 17 22 22 Si 1.86802 * 119.99719 * 162.86026 * 20 18 17 23 23 H 1.48498 * 109.47289 * 89.99649 * 22 20 18 24 24 H 1.48502 * 109.47169 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.47005 * 329.99588 * 22 20 18 26 26 C 1.38586 * 119.96453 * 179.97438 * 13 12 11 27 27 F 1.35105 * 120.18875 * 0.24583 * 26 13 12 28 28 H 1.09004 * 109.47155 * 269.98356 * 1 2 3 29 29 H 1.09007 * 109.47057 * 29.97608 * 1 2 3 30 30 H 1.08996 * 109.47471 * 149.97463 * 1 2 3 31 31 H 1.08000 * 119.82164 * 0.04321 * 3 2 1 32 32 H 1.08001 * 119.74524 * 179.97438 * 4 3 2 33 33 H 1.08007 * 120.38649 * 0.02562 * 7 2 1 34 34 H 1.09002 * 109.47037 * 330.02561 * 11 10 9 35 35 H 1.08996 * 109.46924 * 210.02760 * 11 10 9 36 36 H 0.96999 * 119.99734 * 359.97438 * 12 11 10 37 37 H 1.07995 * 119.77313 * 0.02562 * 14 13 12 38 38 H 1.08005 * 119.80968 * 179.97438 * 15 14 13 39 39 H 1.08003 * 120.05320 * 180.02562 * 16 15 14 40 40 H 0.96994 * 120.00507 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2124 1.2156 0.0000 4 6 3.5620 1.2212 -0.0005 5 7 4.2593 0.0491 0.0044 6 6 3.5976 -1.1544 -0.0011 7 6 2.1897 -1.1764 -0.0005 8 7 4.5228 -2.1003 -0.0012 9 7 5.6902 -1.5589 -0.0013 10 6 5.5855 -0.2549 -0.0008 11 6 6.7256 0.7305 -0.0001 12 7 7.0948 1.0510 -1.3811 13 6 8.1357 1.9501 -1.6363 14 6 8.8191 2.5398 -0.5780 15 6 9.8518 3.4326 -0.8188 16 6 10.2135 3.7471 -2.1083 17 6 9.5325 3.1595 -3.1915 18 6 9.8981 3.4781 -4.5190 19 1 9.6978 2.7784 -5.3168 20 6 10.5193 4.7001 -4.7994 21 7 10.4651 5.6764 -3.9299 22 14 11.4262 4.9377 -6.4151 23 1 10.4865 5.4641 -7.4374 24 1 12.5383 5.9024 -6.2213 25 1 11.9747 3.6351 -6.8710 26 6 8.4846 2.2523 -2.9430 27 9 7.8190 1.6846 -3.9726 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6716 2.1504 0.0007 32 1 4.0939 2.1612 -0.0009 33 1 1.6580 -2.1166 -0.0014 34 1 7.5825 0.2943 0.5133 35 1 6.4186 1.6410 0.5144 36 1 6.6180 0.6391 -2.1186 37 1 8.5433 2.3005 0.4383 38 1 10.3750 3.8847 0.0109 39 1 11.0192 4.4431 -2.2896 40 1 10.8961 6.5234 -4.1242 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162699700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:21 Heat of formation + Delta-G solvation = 80.404253 kcal Electronic energy + Delta-G solvation = -26003.955419 eV Core-core repulsion = 22120.325640 eV Total energy + Delta-G solvation = -3883.629778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.13416 -43.70610 -38.74285 -37.78344 -35.63769 -34.72632 -33.38292 -31.78606 -30.72220 -29.59063 -28.84148 -27.36750 -25.58500 -25.19757 -24.23355 -22.40434 -21.81795 -20.76596 -20.50769 -18.23101 -17.61158 -17.36272 -16.67946 -16.40423 -15.91358 -15.39839 -15.31764 -15.10261 -14.74265 -14.19671 -14.04170 -13.96429 -13.55696 -13.46654 -13.16257 -13.02430 -12.72312 -12.59374 -12.54603 -12.10088 -11.83885 -11.74029 -11.60346 -11.19742 -11.09465 -11.05735 -10.93671 -10.64871 -10.53687 -9.94121 -9.76294 -9.60034 -9.42268 -8.95781 -8.26889 -7.44170 -6.87383 -6.40387 -4.45290 0.33547 0.80399 2.07155 2.46440 2.67659 2.94066 3.03763 3.04169 3.08864 3.18033 3.74034 3.88076 4.03525 4.12259 4.24692 4.36666 4.50634 4.54968 4.59959 4.95196 5.07917 5.11445 5.22391 5.44467 5.47137 5.52165 5.54870 5.76417 5.81713 5.88517 5.89585 6.06964 6.14008 6.57043 6.62365 6.77033 6.89552 7.11359 7.16434 7.49556 7.66141 7.95197 8.04111 8.21045 8.30246 8.39522 8.57165 8.73950 8.88374 10.08550 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002622 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.688933 B =10674.686269 C =11015.572684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.138 4.138 4 C 0.079 3.921 5 N -0.385 5.385 6 C 0.196 3.804 7 C -0.089 4.089 8 N -0.293 5.293 9 N -0.231 5.231 10 C 0.135 3.865 11 C 0.231 3.769 12 N -0.757 5.757 13 C 0.204 3.796 14 C -0.286 4.286 15 C -0.077 4.077 16 C -0.180 4.180 17 C 0.118 3.882 18 C -0.451 4.451 19 H 0.082 0.918 20 C 0.078 3.922 21 N -0.786 5.786 22 Si 0.911 3.089 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.092 4.092 27 F -0.167 7.167 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.395 0.605 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.210 -3.701 8.733 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.060 4.060 3 C -0.160 4.160 4 C -0.044 4.044 5 N -0.066 5.066 6 C -0.052 4.052 7 C -0.110 4.110 8 N -0.139 5.139 9 N -0.071 5.071 10 C -0.127 4.127 11 C 0.104 3.896 12 N -0.393 5.393 13 C 0.105 3.895 14 C -0.309 4.309 15 C -0.096 4.096 16 C -0.200 4.200 17 C 0.114 3.886 18 C -0.480 4.480 19 H 0.100 0.900 20 C -0.141 4.141 21 N -0.410 5.410 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.117 4.117 27 F -0.147 7.147 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.174 0.826 32 H 0.191 0.809 33 H 0.173 0.827 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.229 0.771 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.330 -4.922 8.943 18.417 hybrid contribution -0.478 1.251 -1.122 1.747 sum -15.808 -3.671 7.821 18.015 Atomic orbital electron populations 1.20814 0.89253 1.03766 1.03125 1.19912 0.97322 0.91937 0.96822 1.20869 0.92008 0.99579 1.03547 1.21791 0.93099 0.88956 1.00554 1.43738 1.07707 1.08135 1.46991 1.22348 0.95826 0.81962 1.05088 1.20070 0.87601 0.99937 1.03400 1.75006 0.93639 1.23310 1.21963 1.74276 1.16312 1.03403 1.13085 1.24991 0.82926 0.94620 1.10170 1.19273 0.90634 0.92796 0.86920 1.44223 1.39527 1.51063 1.04466 1.17352 0.88798 0.90900 0.92413 1.19713 1.06135 1.10140 0.94937 1.20467 0.96225 0.96630 0.96302 1.21045 1.03145 1.05311 0.90507 1.17410 0.87916 0.88749 0.94524 1.19509 1.33017 1.01540 0.93926 0.90029 1.25913 0.94212 0.95107 0.98900 1.69833 1.32934 1.02850 1.35419 0.86261 0.79462 0.79348 0.81438 1.19381 1.19931 1.18285 1.17268 1.02209 1.11163 0.81028 1.91215 1.80179 1.84632 1.58626 0.90248 0.90655 0.90700 0.82577 0.80921 0.82702 0.88960 0.91055 0.77138 0.88641 0.88781 0.85960 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.02 36.01 0.36 -0.11 16 2 C -0.05 -0.39 5.88 -104.55 -0.62 -1.01 16 3 C -0.14 -1.02 9.67 -39.88 -0.39 -1.40 16 4 C 0.08 0.77 10.91 -16.69 -0.18 0.58 16 5 N -0.39 -5.07 2.95 -59.73 -0.18 -5.25 16 6 C 0.20 2.70 7.92 -156.05 -1.24 1.47 16 7 C -0.09 -0.86 9.75 -39.41 -0.38 -1.24 16 8 N -0.29 -4.92 12.31 31.14 0.38 -4.54 16 9 N -0.23 -4.05 12.19 32.94 0.40 -3.65 16 10 C 0.14 2.06 7.51 -154.22 -1.16 0.91 16 11 C 0.23 3.46 5.43 -5.20 -0.03 3.43 16 12 N -0.76 -13.99 5.73 -59.79 -0.34 -14.33 16 13 C 0.20 4.51 6.65 -83.73 -0.56 3.95 16 14 C -0.29 -6.00 9.32 -39.12 -0.36 -6.37 16 15 C -0.08 -1.71 10.01 -39.68 -0.40 -2.10 16 16 C -0.18 -4.52 8.68 -38.86 -0.34 -4.85 16 17 C 0.12 3.15 5.57 -106.78 -0.59 2.56 16 18 C -0.45 -12.11 8.77 -37.78 -0.33 -12.44 16 19 H 0.08 2.19 7.74 -52.49 -0.41 1.78 16 20 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 21 N -0.79 -19.73 10.97 55.55 0.61 -19.12 16 22 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 C -0.09 -2.35 7.31 -38.48 -0.28 -2.63 16 27 F -0.17 -4.26 16.08 2.25 0.04 -4.22 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 30 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.09 1.38 7.94 -51.93 -0.41 0.97 16 35 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 36 H 0.39 7.53 7.94 -40.82 -0.32 7.20 16 37 H 0.10 1.72 6.70 -52.49 -0.35 1.37 16 38 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.12 3.14 6.19 -52.48 -0.32 2.82 16 40 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -31.33 349.00 -9.76 -41.09 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.32 Total: 8.69 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -6.58 Total: -17.43 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.88 Total: -46.89 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.04 Total: -4.22 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.33 -9.76 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162699700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.492 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds