Wall clock time and date at job start Sat Apr 11 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40544 * 120.12708 * 2 1 4 4 C 1.34961 * 120.36699 * 180.02562 * 3 2 1 5 5 N 1.36384 * 120.50584 * 359.73498 * 4 3 2 6 6 C 1.37343 * 120.45261 * 0.53345 * 5 4 3 7 7 C 1.36017 * 120.12584 * 180.02562 * 2 1 3 8 8 N 1.32308 * 106.83183 * 179.69202 * 6 5 4 9 9 N 1.28681 * 109.48790 * 359.75785 * 8 6 5 10 10 C 1.30814 * 110.28845 * 0.02562 * 9 8 6 11 11 C 1.50697 * 126.24507 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47111 * 90.02950 * 11 10 9 13 13 C 1.39891 * 120.00297 * 180.02562 * 12 11 10 14 14 C 1.39094 * 119.95568 * 359.97088 * 13 12 11 15 15 C 1.38619 * 120.46371 * 180.02562 * 14 13 12 16 16 C 1.37575 * 120.39056 * 0.02562 * 15 14 13 17 17 C 1.40794 * 119.90587 * 359.97438 * 16 15 14 18 18 C 1.41322 * 120.23088 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99881 * 154.74645 * 18 17 16 20 20 C 1.39919 * 119.99565 * 334.74394 * 18 17 16 21 21 N 1.30848 * 120.00684 * 342.85821 * 20 18 17 22 22 Si 1.86802 * 119.99719 * 162.86026 * 20 18 17 23 23 H 1.48498 * 109.47289 * 89.99649 * 22 20 18 24 24 H 1.48502 * 109.47169 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.47005 * 329.99588 * 22 20 18 26 26 C 1.38586 * 119.96453 * 179.97438 * 13 12 11 27 27 F 1.35105 * 120.18875 * 0.24583 * 26 13 12 28 28 H 1.09004 * 109.47155 * 269.98356 * 1 2 3 29 29 H 1.09007 * 109.47057 * 29.97608 * 1 2 3 30 30 H 1.08996 * 109.47471 * 149.97463 * 1 2 3 31 31 H 1.08000 * 119.82164 * 0.04321 * 3 2 1 32 32 H 1.08001 * 119.74524 * 179.97438 * 4 3 2 33 33 H 1.08007 * 120.38649 * 0.02562 * 7 2 1 34 34 H 1.09002 * 109.47037 * 330.02561 * 11 10 9 35 35 H 1.08996 * 109.46924 * 210.02760 * 11 10 9 36 36 H 0.96999 * 119.99734 * 359.97438 * 12 11 10 37 37 H 1.07995 * 119.77313 * 0.02562 * 14 13 12 38 38 H 1.08005 * 119.80968 * 179.97438 * 15 14 13 39 39 H 1.08003 * 120.05320 * 180.02562 * 16 15 14 40 40 H 0.96994 * 120.00507 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2124 1.2156 0.0000 4 6 3.5620 1.2212 -0.0005 5 7 4.2593 0.0491 0.0044 6 6 3.5976 -1.1544 -0.0011 7 6 2.1897 -1.1764 -0.0005 8 7 4.5228 -2.1003 -0.0012 9 7 5.6902 -1.5589 -0.0013 10 6 5.5855 -0.2549 -0.0008 11 6 6.7256 0.7305 -0.0001 12 7 7.0948 1.0510 -1.3811 13 6 8.1357 1.9501 -1.6363 14 6 8.8191 2.5398 -0.5780 15 6 9.8518 3.4326 -0.8188 16 6 10.2135 3.7471 -2.1083 17 6 9.5325 3.1595 -3.1915 18 6 9.8981 3.4781 -4.5190 19 1 9.6978 2.7784 -5.3168 20 6 10.5193 4.7001 -4.7994 21 7 10.4651 5.6764 -3.9299 22 14 11.4262 4.9377 -6.4151 23 1 10.4865 5.4641 -7.4374 24 1 12.5383 5.9024 -6.2213 25 1 11.9747 3.6351 -6.8710 26 6 8.4846 2.2523 -2.9430 27 9 7.8190 1.6846 -3.9726 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6716 2.1504 0.0007 32 1 4.0939 2.1612 -0.0009 33 1 1.6580 -2.1166 -0.0014 34 1 7.5825 0.2943 0.5133 35 1 6.4186 1.6410 0.5144 36 1 6.6180 0.6391 -2.1186 37 1 8.5433 2.3005 0.4383 38 1 10.3750 3.8847 0.0109 39 1 11.0192 4.4431 -2.2896 40 1 10.8961 6.5234 -4.1242 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162699700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:21 Heat of formation + Delta-G solvation = 63.736604 kcal Electronic energy + Delta-G solvation = -26004.678182 eV Core-core repulsion = 22120.325640 eV Total energy + Delta-G solvation = -3884.352542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.09384 -44.69805 -39.61411 -39.44473 -37.16505 -35.74377 -35.02165 -32.84868 -31.63622 -31.42894 -30.01042 -28.39746 -27.29178 -26.71492 -25.03650 -23.24590 -23.08394 -22.52048 -22.05160 -19.40876 -19.14736 -18.24759 -17.94113 -17.79084 -17.65577 -16.89628 -16.31913 -16.22289 -16.16756 -15.93307 -15.47692 -15.00866 -14.88111 -14.75779 -14.44305 -14.29812 -13.72266 -13.64800 -13.44616 -13.37679 -13.17318 -13.01632 -12.89602 -12.74010 -12.62995 -12.53529 -12.16515 -11.92025 -11.75827 -11.72953 -11.42484 -11.18716 -10.66065 -10.60386 -9.32082 -9.16224 -8.70670 -8.11405 -6.41599 -0.40645 -0.08046 0.87890 1.11539 1.15655 1.36964 1.40323 1.47940 1.53675 2.19444 2.23161 2.60027 2.69600 2.87463 3.24557 3.38607 3.58633 3.64794 3.67369 3.95147 4.04778 4.19785 4.40790 4.42317 4.47469 4.62765 4.73045 4.80940 4.83254 4.87188 4.91223 5.00795 5.05737 5.14040 5.26116 5.28162 5.39279 5.44930 5.69372 5.77203 5.86444 6.08827 6.17300 6.41327 6.63876 6.69307 6.82794 7.01667 7.32156 8.27241 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002622 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.688933 B =10674.686269 C =11015.572684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.029 4.029 3 C -0.121 4.121 4 C 0.051 3.949 5 N -0.386 5.386 6 C 0.193 3.807 7 C -0.115 4.115 8 N -0.342 5.342 9 N -0.268 5.268 10 C 0.122 3.878 11 C 0.235 3.765 12 N -0.751 5.751 13 C 0.214 3.786 14 C -0.276 4.276 15 C -0.069 4.069 16 C -0.207 4.207 17 C 0.090 3.910 18 C -0.495 4.495 19 H 0.064 0.936 20 C 0.042 3.958 21 N -0.810 5.810 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.256 1.256 25 H -0.264 1.264 26 C -0.131 4.131 27 F -0.177 7.177 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.198 0.802 32 H 0.190 0.810 33 H 0.171 0.829 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.390 0.610 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 -2.236 10.142 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.036 4.036 3 C -0.141 4.141 4 C -0.070 4.070 5 N -0.065 5.065 6 C -0.055 4.055 7 C -0.137 4.137 8 N -0.189 5.189 9 N -0.108 5.108 10 C -0.142 4.142 11 C 0.109 3.891 12 N -0.384 5.384 13 C 0.113 3.887 14 C -0.299 4.299 15 C -0.088 4.088 16 C -0.227 4.227 17 C 0.086 3.914 18 C -0.524 4.524 19 H 0.082 0.918 20 C -0.175 4.175 21 N -0.435 5.435 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.180 1.180 25 H -0.189 1.189 26 C -0.155 4.155 27 F -0.157 7.157 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.215 0.785 32 H 0.207 0.793 33 H 0.189 0.811 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.223 0.777 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.678 -3.469 10.389 20.796 hybrid contribution -0.058 0.796 -1.411 1.621 sum -17.736 -2.673 8.978 20.058 Atomic orbital electron populations 1.20959 0.86272 1.05132 1.04560 1.20428 0.99238 0.91007 0.92902 1.21474 0.91173 1.01231 1.00251 1.22391 0.94277 0.88460 1.01897 1.43793 1.07029 1.09014 1.46666 1.22883 0.97005 0.81721 1.03919 1.20431 0.85933 1.01933 1.05380 1.74868 0.94096 1.24834 1.25068 1.74123 1.17442 1.04855 1.14352 1.24781 0.83918 0.94016 1.11473 1.19402 0.90944 0.93966 0.84773 1.44322 1.38224 1.49790 1.06105 1.17438 0.89111 0.90689 0.91437 1.20128 1.04800 1.08587 0.96377 1.20839 0.96021 0.95900 0.96018 1.21009 1.03733 1.06412 0.91591 1.17767 0.88727 0.89697 0.95201 1.19634 1.36043 1.02742 0.93972 0.91786 1.26666 0.94271 0.94076 1.02465 1.69848 1.33250 1.03335 1.37074 0.85231 0.78497 0.79184 0.76984 1.18725 1.18018 1.18860 1.17626 1.03156 1.12506 0.82256 1.91167 1.80350 1.84833 1.59345 0.88495 0.88817 0.89911 0.78521 0.79303 0.81112 0.88705 0.88222 0.77730 0.84696 0.85469 0.87281 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.41 10.02 71.24 0.71 0.30 16 2 C -0.03 -0.32 5.88 -19.82 -0.12 -0.44 16 3 C -0.12 -1.28 9.67 22.08 0.21 -1.06 16 4 C 0.05 0.87 10.91 83.23 0.91 1.78 16 5 N -0.39 -9.80 2.95 -342.87 -1.01 -10.81 16 6 C 0.19 5.29 7.92 134.06 1.06 6.35 16 7 C -0.12 -2.05 9.75 22.38 0.22 -1.83 16 8 N -0.34 -11.94 12.31 -55.40 -0.68 -12.62 16 9 N -0.27 -9.73 12.19 -49.68 -0.61 -10.33 16 10 C 0.12 3.70 7.51 137.71 1.03 4.73 16 11 C 0.23 6.71 5.43 85.63 0.46 7.18 16 12 N -0.75 -27.40 5.73 -343.07 -1.97 -29.37 16 13 C 0.21 9.38 6.65 38.14 0.25 9.63 16 14 C -0.28 -10.99 9.32 22.57 0.21 -10.78 16 15 C -0.07 -2.96 10.01 22.20 0.22 -2.73 16 16 C -0.21 -10.59 8.68 22.74 0.20 -10.39 16 17 C 0.09 4.99 5.57 -21.26 -0.12 4.87 16 18 C -0.50 -27.93 8.77 23.44 0.21 -27.73 16 19 H 0.06 3.67 7.74 -2.91 -0.02 3.65 16 20 C 0.04 2.13 5.15 85.25 0.44 2.57 16 21 N -0.81 -41.46 10.97 21.82 0.24 -41.22 16 22 Si 0.98 38.69 29.59 68.60 2.03 40.72 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 C -0.13 -6.88 7.31 22.98 0.17 -6.71 16 27 F -0.18 -9.48 16.08 44.97 0.72 -8.76 16 28 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.09 0.09 8.10 -2.38 -0.02 0.07 16 30 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 31 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.10 2.69 7.94 -2.39 -0.02 2.67 16 35 H 0.10 2.30 7.94 -2.39 -0.02 2.28 16 36 H 0.39 15.10 7.94 -92.71 -0.74 14.36 16 37 H 0.14 4.30 6.70 -2.91 -0.02 4.28 16 38 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.11 5.77 6.19 -2.91 -0.02 5.76 16 40 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 Total: -1.00 -73.81 349.00 5.17 -68.65 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.37 Total: 28.00 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 6.07 Total: -24.26 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -4.03 Total: -104.35 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.72 Total: -8.76 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -73.81 5.17 -68.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162699700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.383 kcal (2) G-P(sol) polarization free energy of solvation -73.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds