Wall clock time and date at job start Sat Apr 11 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 O 1.45193 * 109.47402 * 239.99356 * 2 1 3 5 5 C 1.34232 * 117.00116 * 90.00074 * 4 2 1 6 6 O 1.20830 * 119.99416 * 359.97438 * 5 4 2 7 7 C 1.50691 * 120.00352 * 180.28017 * 5 4 2 8 8 C 1.50695 * 109.47363 * 179.72237 * 7 5 4 9 9 C 1.38302 * 119.93155 * 269.72406 * 8 7 5 10 10 C 1.38102 * 120.07123 * 179.72208 * 9 8 7 11 11 C 1.38887 * 119.92786 * 0.57086 * 10 9 8 12 12 O 1.35749 * 120.06984 * 179.68163 * 11 10 9 13 13 C 1.34830 * 117.00251 * 174.48991 * 12 11 10 14 14 H 1.08001 * 119.99602 * 5.05000 * 13 12 11 15 15 C 1.38653 * 119.99975 * 185.05738 * 13 12 11 16 16 N 1.31549 * 119.99906 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99780 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47287 * 59.99679 * 17 15 13 19 19 H 1.48500 * 109.47100 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.47188 * 299.99979 * 17 15 13 21 21 C 1.38876 * 119.86019 * 359.70844 * 11 10 9 22 22 C 1.38099 * 119.93316 * 359.97438 * 21 11 10 23 23 C 1.50700 * 109.47144 * 119.99404 * 2 1 3 24 24 C 1.38232 * 120.00012 * 84.73072 * 23 2 1 25 25 C 1.38237 * 120.00258 * 179.78866 * 24 23 2 26 26 C 1.38235 * 119.99588 * 0.44051 * 25 24 23 27 27 C 1.38237 * 120.00211 * 359.81046 * 26 25 24 28 28 C 1.38227 * 119.99763 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47388 * 300.00439 * 1 2 3 30 30 H 1.08997 * 109.47088 * 60.00335 * 1 2 3 31 31 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47160 * 299.71847 * 7 5 4 33 33 H 1.09002 * 109.47391 * 59.72361 * 7 5 4 34 34 H 1.08002 * 119.96739 * 359.97438 * 9 8 7 35 35 H 1.07996 * 120.03874 * 180.27513 * 10 9 8 36 36 H 0.97011 * 119.99667 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.03167 * 179.97438 * 21 11 10 38 38 H 1.08002 * 119.96747 * 180.02562 * 22 21 11 39 39 H 1.08005 * 120.00257 * 359.97438 * 24 23 2 40 40 H 1.08003 * 120.00547 * 180.27241 * 25 24 23 41 41 H 1.08001 * 120.00050 * 179.83654 * 26 25 24 42 42 H 1.08002 * 119.99705 * 180.02562 * 27 26 25 43 43 H 1.08007 * 119.99747 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1854 5 6 2.2172 0.0638 -2.2811 6 8 1.9974 1.2515 -2.2506 7 6 2.7129 -0.5784 -3.5510 8 6 2.8501 0.4706 -4.6241 9 6 1.7832 0.7468 -5.4596 10 6 1.9039 1.7116 -6.4403 11 6 3.1022 2.3966 -6.5947 12 8 3.2261 3.3410 -7.5619 13 6 4.3744 4.0473 -7.5844 14 1 5.1766 3.7954 -6.9065 15 6 4.5253 5.0970 -8.4775 16 7 3.5483 5.4035 -9.3034 17 14 6.1160 6.0759 -8.5081 18 1 7.2489 5.1696 -8.8248 19 1 6.0249 7.1361 -9.5440 20 1 6.3384 6.7007 -7.1793 21 6 4.1736 2.1129 -5.7578 22 6 4.0444 1.1516 -4.7748 23 6 2.0323 -0.7103 1.2305 24 6 2.1590 -2.0868 1.2307 25 6 2.6240 -2.7380 2.3580 26 6 2.9535 -2.0134 3.4881 27 6 2.8219 -0.6373 3.4897 28 6 2.3612 0.0142 2.3610 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.6828 -1.0414 -3.3694 33 1 2.0022 -1.3388 -3.8750 34 1 0.8532 0.2102 -5.3425 35 1 1.0690 1.9300 -7.0896 36 1 3.6540 6.1378 -9.9285 37 1 5.1068 2.6436 -5.8757 38 1 4.8771 0.9308 -4.1234 39 1 1.8977 -2.6533 0.3491 40 1 2.7272 -3.8131 2.3567 41 1 3.3143 -2.5223 4.3698 42 1 3.0798 -0.0712 4.3726 43 1 2.2587 1.0894 2.3621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110175524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:39:29 Heat of formation + Delta-G solvation = -67.737189 kcal Electronic energy + Delta-G solvation = -25744.509345 eV Core-core repulsion = 21913.330475 eV Total energy + Delta-G solvation = -3831.178871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.68621 -39.45095 -38.91359 -36.99473 -36.16487 -33.33764 -32.47891 -31.42103 -31.19288 -30.17533 -29.53371 -26.96931 -25.25837 -24.28018 -23.01756 -22.01519 -21.91709 -20.76466 -20.04159 -17.99756 -17.63019 -17.50933 -16.96918 -16.24132 -16.04779 -15.32213 -15.04381 -14.64446 -14.60416 -14.34699 -14.07416 -13.76864 -13.66368 -13.59015 -13.44077 -13.19274 -12.81103 -12.71114 -12.50981 -12.43634 -11.95076 -11.81177 -11.54822 -11.43222 -11.26844 -11.07765 -10.88617 -10.79087 -10.72498 -10.65326 -10.44422 -10.24751 -9.34177 -9.22377 -9.08199 -8.82837 -8.17468 -7.20374 -6.45173 -4.03788 0.97086 1.10262 2.12197 2.23528 2.38804 2.82911 3.13421 3.15543 3.17532 3.48056 3.96952 4.28732 4.51697 4.59864 4.68562 4.79500 4.84936 4.92106 4.97394 5.07777 5.16980 5.20398 5.22721 5.25277 5.30320 5.50198 5.55982 5.63872 5.64805 5.71210 5.75479 5.82593 5.86076 6.12428 6.19703 6.20369 6.25181 6.39841 6.53474 6.66883 6.69342 6.89609 7.04031 7.21577 7.33904 7.43467 7.80960 7.93125 7.99774 9.00241 9.69809 10.72606 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.002109 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.589093 B =13271.219440 C =13790.209071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 H 0.093 0.907 4 O -0.356 6.356 5 C 0.455 3.545 6 O -0.490 6.490 7 C -0.050 4.050 8 C -0.183 4.183 9 C -0.056 4.056 10 C -0.192 4.192 11 C 0.159 3.841 12 O -0.176 6.176 13 C -0.392 4.392 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.233 4.233 22 C -0.053 4.053 23 C -0.087 4.087 24 C -0.093 4.093 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.109 4.109 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -15.428 22.050 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.111 0.889 4 O -0.275 6.275 5 C 0.297 3.703 6 O -0.375 6.375 7 C -0.087 4.087 8 C -0.184 4.184 9 C -0.075 4.075 10 C -0.211 4.211 11 C 0.105 3.895 12 O -0.079 6.079 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.252 4.252 22 C -0.071 4.071 23 C -0.087 4.087 24 C -0.111 4.111 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.127 4.127 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.814 -14.781 21.698 26.405 hybrid contribution 0.817 0.671 0.154 1.068 sum -1.997 -14.110 21.852 26.088 Atomic orbital electron populations 1.22162 0.93289 1.03180 1.03345 1.21364 0.94501 0.96434 0.80627 0.88893 1.86564 1.77565 1.42907 1.20425 1.24235 0.74605 0.86431 0.85017 1.90698 1.46502 1.16592 1.83676 1.20097 1.03244 0.97771 0.87603 1.18632 0.96003 1.03451 1.00337 1.20420 0.96674 0.96162 0.94220 1.20161 0.96704 1.01230 1.03015 1.19402 0.93022 0.89318 0.87775 1.83975 1.39061 1.41948 1.42876 1.21292 0.91563 1.12304 1.21667 0.89071 1.25298 0.99271 0.96504 0.95450 1.70031 1.31617 1.28258 1.19731 0.85776 0.80076 0.79056 0.78496 1.19473 1.20261 1.19481 1.21106 1.00325 1.03389 1.00418 1.20534 0.95921 0.94472 0.96203 1.19673 1.00620 0.94309 0.94130 1.21055 0.98007 0.93758 0.98294 1.21198 0.99538 1.00055 0.93291 1.21207 0.99834 0.94297 0.98364 1.21105 0.99929 0.94715 0.98142 1.20989 0.98847 0.99987 0.92836 0.90728 0.91294 0.91452 0.87861 0.87783 0.87206 0.86412 0.91942 0.85471 0.87659 0.85288 0.85871 0.86056 0.85835 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.53 37.16 0.35 -1.22 16 2 C 0.13 1.40 2.77 -27.88 -0.08 1.33 16 3 H 0.09 1.15 7.07 -51.93 -0.37 0.79 16 4 O -0.36 -4.40 9.04 -39.26 -0.35 -4.76 16 5 C 0.45 6.56 7.92 36.00 0.29 6.84 16 6 O -0.49 -8.87 15.25 -18.75 -0.29 -9.15 16 7 C -0.05 -0.64 5.94 -29.04 -0.17 -0.81 16 8 C -0.18 -3.15 4.38 -104.58 -0.46 -3.61 16 9 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 10 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 11 C 0.16 3.92 6.65 -39.10 -0.26 3.66 16 12 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 13 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 14 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 17 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 22 C -0.05 -1.00 9.69 -39.61 -0.38 -1.38 16 23 C -0.09 -0.87 5.01 -104.62 -0.52 -1.40 16 24 C -0.09 -0.86 9.35 -39.58 -0.37 -1.23 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 28 C -0.11 -0.97 9.68 -39.59 -0.38 -1.36 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.13 1.11 7.63 -52.48 -0.40 0.71 16 40 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -33.14 374.34 -8.93 -42.07 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.54 Total: 4.71 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -4.12 Total: -24.43 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.64 Total: -18.99 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.14 -8.93 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110175524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.668 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds