Wall clock time and date at job start Sat Apr 11 2020 01:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47470 * 2 1 4 4 O 1.45205 * 109.47401 * 120.00107 * 2 1 3 5 5 C 1.34228 * 117.00075 * 270.00300 * 4 2 1 6 6 O 1.20828 * 120.00231 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00132 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47606 * 179.97438 * 7 5 4 9 9 C 1.38302 * 119.92956 * 269.72838 * 8 7 5 10 10 C 1.38099 * 120.07159 * 179.71904 * 9 8 7 11 11 C 1.38883 * 119.92723 * 0.57281 * 10 9 8 12 12 O 1.35752 * 120.06961 * 179.68208 * 11 10 9 13 13 C 1.34828 * 116.99914 * 174.48774 * 12 11 10 14 14 H 1.08003 * 120.00088 * 5.04897 * 13 12 11 15 15 C 1.38655 * 120.00019 * 185.05941 * 13 12 11 16 16 N 1.31559 * 119.99668 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99949 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47205 * 89.99530 * 17 15 13 19 19 H 1.48500 * 109.46700 * 209.99326 * 17 15 13 20 20 H 1.48496 * 109.47064 * 329.99075 * 17 15 13 21 21 C 1.38885 * 119.85998 * 359.69766 * 11 10 9 22 22 C 1.38095 * 119.93328 * 0.02562 * 21 11 10 23 23 C 1.50700 * 109.47405 * 240.00324 * 2 1 3 24 24 C 1.38235 * 119.99619 * 279.73156 * 23 2 1 25 25 C 1.38234 * 119.99984 * 179.80469 * 24 23 2 26 26 C 1.38242 * 119.99965 * 0.39825 * 25 24 23 27 27 C 1.38236 * 119.99707 * 359.85267 * 26 25 24 28 28 C 1.38230 * 120.00277 * 99.99717 * 23 2 1 29 29 H 1.08999 * 109.47273 * 59.99152 * 1 2 3 30 30 H 1.08993 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47207 * 300.00086 * 1 2 3 32 32 H 1.08997 * 109.47305 * 299.99964 * 7 5 4 33 33 H 1.09000 * 109.47211 * 59.99468 * 7 5 4 34 34 H 1.08002 * 119.96805 * 359.97438 * 9 8 7 35 35 H 1.07998 * 120.04086 * 180.26941 * 10 9 8 36 36 H 0.97006 * 119.99567 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.03097 * 179.97438 * 21 11 10 38 38 H 1.07996 * 119.96891 * 179.97438 * 22 21 11 39 39 H 1.08004 * 120.00000 * 359.97438 * 24 23 2 40 40 H 1.07996 * 120.00490 * 180.22545 * 25 24 23 41 41 H 1.07991 * 120.00075 * 179.83496 * 26 25 24 42 42 H 1.07995 * 120.00155 * 179.97438 * 27 26 25 43 43 H 1.08003 * 119.99874 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0639 2.2811 6 8 1.9981 1.2518 2.2505 7 6 2.7182 -0.5773 3.5494 8 6 2.8614 0.4729 4.6208 9 6 4.0589 1.1487 4.7690 10 6 4.1914 2.1157 5.7460 11 6 3.1244 2.4008 6.5879 12 8 3.2536 3.3462 7.5535 13 6 2.1475 3.6546 8.2602 14 1 1.2342 3.0999 8.1030 15 6 2.1824 4.6840 9.1884 16 7 3.2950 5.3594 9.3800 17 14 0.6502 5.1107 10.1680 18 1 0.6261 4.3146 11.4212 19 1 0.6627 6.5578 10.5010 20 1 -0.5564 4.7991 9.3603 21 6 1.9249 1.7164 6.4402 22 6 1.7969 0.7546 5.4576 23 6 2.0323 -0.7103 -1.2305 24 6 2.0719 -2.0917 -1.2633 25 6 2.5290 -2.7434 -2.3934 26 6 2.9542 -2.0136 -3.4878 27 6 2.9194 -0.6321 -3.4530 28 6 2.4587 0.0195 -2.3243 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.0088 -1.3370 3.8774 33 1 3.6871 -1.0409 3.3639 34 1 4.8900 0.9229 4.1173 35 1 5.1254 2.6461 5.8585 36 1 3.3195 6.0793 10.0297 37 1 1.0935 1.9356 7.0937 38 1 0.8646 0.2218 5.3424 39 1 1.7432 -2.6619 -0.4069 40 1 2.5565 -3.8227 -2.4205 41 1 3.3137 -2.5227 -4.3697 42 1 3.2519 -0.0619 -4.3077 43 1 2.4314 1.0988 -2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110175527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:39:33 Heat of formation + Delta-G solvation = -67.802032 kcal Electronic energy + Delta-G solvation = -25735.391117 eV Core-core repulsion = 21904.209435 eV Total energy + Delta-G solvation = -3831.181682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.68288 -39.45359 -38.91392 -36.99313 -36.16330 -33.33719 -32.47786 -31.41867 -31.20272 -30.17620 -29.53092 -26.96866 -25.25603 -24.28733 -23.01818 -22.01324 -21.92738 -20.76019 -20.04235 -18.00227 -17.62420 -17.50518 -16.95694 -16.21448 -16.11952 -15.32653 -14.99198 -14.70305 -14.58898 -14.33931 -14.06839 -13.73484 -13.68378 -13.54599 -13.47483 -13.21999 -12.80108 -12.71301 -12.51473 -12.41244 -11.97074 -11.80273 -11.54921 -11.43911 -11.27914 -11.08362 -10.88901 -10.79979 -10.71300 -10.63220 -10.43510 -10.24561 -9.33821 -9.22751 -9.09736 -8.83327 -8.17483 -7.20350 -6.45402 -4.03929 0.95926 1.09839 2.12525 2.23528 2.39054 2.83491 3.13024 3.14374 3.18981 3.48466 3.96695 4.28758 4.51581 4.58975 4.68165 4.79287 4.84755 4.91835 4.97869 5.07698 5.16805 5.20503 5.22957 5.24859 5.30235 5.50125 5.56073 5.64120 5.64692 5.70807 5.75055 5.82894 5.86102 6.12235 6.19547 6.20101 6.24932 6.39871 6.53315 6.66405 6.69382 6.89641 7.04156 7.21819 7.33823 7.43431 7.80971 7.93400 7.99693 9.00144 9.69839 10.72485 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.002034 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.973554 B =13761.347934 C =13968.051255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 H 0.093 0.907 4 O -0.356 6.356 5 C 0.455 3.545 6 O -0.490 6.490 7 C -0.050 4.050 8 C -0.183 4.183 9 C -0.057 4.057 10 C -0.192 4.192 11 C 0.159 3.841 12 O -0.176 6.176 13 C -0.391 4.391 14 H 0.093 0.907 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.942 3.058 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.233 4.233 22 C -0.053 4.053 23 C -0.087 4.087 24 C -0.092 4.092 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.108 4.108 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.270 0.730 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -15.550 -21.923 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.111 0.889 4 O -0.274 6.274 5 C 0.297 3.703 6 O -0.375 6.375 7 C -0.087 4.087 8 C -0.184 4.184 9 C -0.075 4.075 10 C -0.211 4.211 11 C 0.105 3.895 12 O -0.079 6.079 13 C -0.468 4.468 14 H 0.110 0.890 15 C -0.166 4.166 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.252 4.252 22 C -0.071 4.071 23 C -0.088 4.088 24 C -0.110 4.110 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.139 4.139 28 C -0.126 4.126 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.922 -14.821 -21.720 26.457 hybrid contribution -0.854 0.374 0.366 1.002 sum -3.776 -14.447 -21.354 26.057 Atomic orbital electron populations 1.22165 0.93328 1.03171 1.03343 1.21374 0.94510 0.96426 0.80616 0.88923 1.86576 1.77557 1.42923 1.20392 1.24232 0.74625 0.86427 0.85011 1.90697 1.46571 1.16576 1.83639 1.20098 1.03194 0.97772 0.87662 1.18633 0.95897 1.03483 1.00383 1.20426 0.96087 0.94596 0.96377 1.20161 0.98896 1.03108 0.98924 1.19404 0.93063 0.88938 0.88107 1.83977 1.35811 1.48023 1.40084 1.21340 0.89410 1.17469 1.18550 0.89013 1.25305 0.98755 0.95176 0.97323 1.70044 1.26028 1.20439 1.33120 0.85702 0.79989 0.78168 0.79522 1.19860 1.20240 1.19177 1.21108 0.99197 1.01587 1.03346 1.20526 0.96460 0.96061 0.94090 1.19665 1.00478 0.94265 0.94352 1.21050 0.98212 0.93739 0.98024 1.21195 0.99407 1.00040 0.93483 1.21209 0.99606 0.94237 0.98572 1.21111 1.00070 0.94687 0.98057 1.21015 0.98358 1.00018 0.93174 0.90719 0.91457 0.91313 0.87834 0.87818 0.87212 0.86412 0.91998 0.85464 0.87651 0.85366 0.85870 0.86044 0.85827 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.53 37.15 0.35 -1.23 16 2 C 0.13 1.40 2.77 -27.89 -0.08 1.33 16 3 H 0.09 1.15 7.02 -51.93 -0.36 0.78 16 4 O -0.36 -4.42 9.20 -39.25 -0.36 -4.78 16 5 C 0.45 6.57 7.92 36.00 0.29 6.85 16 6 O -0.49 -8.88 15.25 -18.75 -0.29 -9.16 16 7 C -0.05 -0.64 5.94 -29.04 -0.17 -0.81 16 8 C -0.18 -3.15 4.38 -104.57 -0.46 -3.61 16 9 C -0.06 -1.03 9.69 -39.61 -0.38 -1.42 16 10 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 11 C 0.16 3.92 6.65 -39.10 -0.26 3.66 16 12 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 13 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 14 H 0.09 2.40 5.20 -52.48 -0.27 2.12 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 17 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.23 -5.16 9.17 -39.39 -0.36 -5.53 16 22 C -0.05 -0.99 9.69 -39.61 -0.38 -1.38 16 23 C -0.09 -0.87 4.98 -104.63 -0.52 -1.39 16 24 C -0.09 -0.84 9.36 -39.58 -0.37 -1.21 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.11 -0.96 9.67 -39.58 -0.38 -1.35 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.10 1.08 8.08 -51.93 -0.42 0.67 16 33 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.13 1.09 7.77 -52.48 -0.41 0.68 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.96 8.04 -52.48 -0.42 0.54 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -33.17 374.52 -8.93 -42.10 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.54 Total: 4.68 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -4.12 Total: -24.37 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.65 Total: -19.03 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.17 -8.93 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110175527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.705 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds