Wall clock time and date at job start Sat Apr 11 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47470 * 2 1 4 4 O 1.45205 * 109.47401 * 120.00107 * 2 1 3 5 5 C 1.34228 * 117.00075 * 270.00300 * 4 2 1 6 6 O 1.20828 * 120.00231 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00132 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47606 * 179.97438 * 7 5 4 9 9 C 1.38302 * 119.92956 * 269.72838 * 8 7 5 10 10 C 1.38099 * 120.07159 * 179.71904 * 9 8 7 11 11 C 1.38883 * 119.92723 * 0.57281 * 10 9 8 12 12 O 1.35752 * 120.06961 * 179.68208 * 11 10 9 13 13 C 1.34828 * 116.99914 * 174.48774 * 12 11 10 14 14 H 1.08003 * 120.00088 * 5.04897 * 13 12 11 15 15 C 1.38655 * 120.00019 * 185.05941 * 13 12 11 16 16 N 1.31559 * 119.99668 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99949 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47205 * 89.99530 * 17 15 13 19 19 H 1.48500 * 109.46700 * 209.99326 * 17 15 13 20 20 H 1.48496 * 109.47064 * 329.99075 * 17 15 13 21 21 C 1.38885 * 119.85998 * 359.69766 * 11 10 9 22 22 C 1.38095 * 119.93328 * 0.02562 * 21 11 10 23 23 C 1.50700 * 109.47405 * 240.00324 * 2 1 3 24 24 C 1.38235 * 119.99619 * 279.73156 * 23 2 1 25 25 C 1.38234 * 119.99984 * 179.80469 * 24 23 2 26 26 C 1.38242 * 119.99965 * 0.39825 * 25 24 23 27 27 C 1.38236 * 119.99707 * 359.85267 * 26 25 24 28 28 C 1.38230 * 120.00277 * 99.99717 * 23 2 1 29 29 H 1.08999 * 109.47273 * 59.99152 * 1 2 3 30 30 H 1.08993 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47207 * 300.00086 * 1 2 3 32 32 H 1.08997 * 109.47305 * 299.99964 * 7 5 4 33 33 H 1.09000 * 109.47211 * 59.99468 * 7 5 4 34 34 H 1.08002 * 119.96805 * 359.97438 * 9 8 7 35 35 H 1.07998 * 120.04086 * 180.26941 * 10 9 8 36 36 H 0.97006 * 119.99567 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.03097 * 179.97438 * 21 11 10 38 38 H 1.07996 * 119.96891 * 179.97438 * 22 21 11 39 39 H 1.08004 * 120.00000 * 359.97438 * 24 23 2 40 40 H 1.07996 * 120.00490 * 180.22545 * 25 24 23 41 41 H 1.07991 * 120.00075 * 179.83496 * 26 25 24 42 42 H 1.07995 * 120.00155 * 179.97438 * 27 26 25 43 43 H 1.08003 * 119.99874 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0639 2.2811 6 8 1.9981 1.2518 2.2505 7 6 2.7182 -0.5773 3.5494 8 6 2.8614 0.4729 4.6208 9 6 4.0589 1.1487 4.7690 10 6 4.1914 2.1157 5.7460 11 6 3.1244 2.4008 6.5879 12 8 3.2536 3.3462 7.5535 13 6 2.1475 3.6546 8.2602 14 1 1.2342 3.0999 8.1030 15 6 2.1824 4.6840 9.1884 16 7 3.2950 5.3594 9.3800 17 14 0.6502 5.1107 10.1680 18 1 0.6261 4.3146 11.4212 19 1 0.6627 6.5578 10.5010 20 1 -0.5564 4.7991 9.3603 21 6 1.9249 1.7164 6.4402 22 6 1.7969 0.7546 5.4576 23 6 2.0323 -0.7103 -1.2305 24 6 2.0719 -2.0917 -1.2633 25 6 2.5290 -2.7434 -2.3934 26 6 2.9542 -2.0136 -3.4878 27 6 2.9194 -0.6321 -3.4530 28 6 2.4587 0.0195 -2.3243 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.0088 -1.3370 3.8774 33 1 3.6871 -1.0409 3.3639 34 1 4.8900 0.9229 4.1173 35 1 5.1254 2.6461 5.8585 36 1 3.3195 6.0793 10.0297 37 1 1.0935 1.9356 7.0937 38 1 0.8646 0.2218 5.3424 39 1 1.7432 -2.6619 -0.4069 40 1 2.5565 -3.8227 -2.4205 41 1 3.3137 -2.5227 -4.3697 42 1 3.2519 -0.0619 -4.3077 43 1 2.4314 1.0988 -2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110175527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:39:32 Heat of formation + Delta-G solvation = -84.935598 kcal Electronic energy + Delta-G solvation = -25736.134084 eV Core-core repulsion = 21904.209435 eV Total energy + Delta-G solvation = -3831.924650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75592 -40.75841 -40.05748 -38.49919 -37.45562 -34.45198 -34.12385 -32.87795 -31.81286 -31.79851 -30.24329 -28.49038 -27.15033 -25.14541 -23.71006 -23.66766 -23.01753 -21.86563 -21.22067 -19.86916 -18.88302 -18.69886 -18.21408 -17.26245 -17.02569 -16.43070 -16.28152 -16.05182 -16.02831 -15.56917 -15.49372 -15.15677 -14.82371 -14.64223 -14.41086 -14.25377 -14.14672 -14.06011 -13.63019 -13.47238 -13.18617 -13.00089 -12.90123 -12.60412 -12.51066 -12.36297 -12.29124 -12.13873 -12.10633 -11.79274 -11.66574 -11.42315 -11.19767 -10.80299 -9.83180 -9.79512 -9.73473 -8.96234 -8.48586 -6.16840 0.31066 0.49432 0.58517 0.59289 1.27069 1.33762 1.42696 1.51646 1.77306 2.16765 2.81071 2.86774 3.14844 3.49177 3.54363 3.74405 3.88982 3.92776 4.01640 4.12277 4.16560 4.18815 4.20776 4.30488 4.42484 4.55559 4.59056 4.61290 4.66947 4.72849 4.77387 4.79422 5.01568 5.04474 5.09262 5.12833 5.15968 5.26663 5.39930 5.53118 5.56180 5.62184 5.68350 5.69597 5.72166 6.01273 6.08200 6.19338 6.82703 6.95869 7.76227 8.74619 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.002034 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.973554 B =13761.347934 C =13968.051255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.075 0.925 4 O -0.347 6.347 5 C 0.461 3.539 6 O -0.535 6.535 7 C -0.048 4.048 8 C -0.158 4.158 9 C -0.054 4.054 10 C -0.206 4.206 11 C 0.116 3.884 12 O -0.231 6.231 13 C -0.414 4.414 14 H 0.102 0.898 15 C -0.024 4.024 16 N -0.920 5.920 17 Si 1.020 2.980 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.254 1.254 21 C -0.244 4.244 22 C -0.055 4.055 23 C -0.104 4.104 24 C -0.103 4.103 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.122 4.122 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.273 0.727 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -18.852 -24.542 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.093 0.907 4 O -0.264 6.264 5 C 0.306 3.694 6 O -0.424 6.424 7 C -0.085 4.085 8 C -0.158 4.158 9 C -0.072 4.072 10 C -0.226 4.226 11 C 0.066 3.934 12 O -0.138 6.138 13 C -0.490 4.490 14 H 0.119 0.881 15 C -0.222 4.222 16 N -0.558 5.558 17 Si 0.839 3.161 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.178 1.178 21 C -0.263 4.263 22 C -0.073 4.073 23 C -0.104 4.104 24 C -0.121 4.121 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.140 4.140 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.005 -18.196 -24.394 30.695 hybrid contribution -0.446 1.110 0.788 1.432 sum -4.451 -17.086 -23.607 29.479 Atomic orbital electron populations 1.22139 0.92397 1.03842 1.03163 1.21477 0.95301 0.95652 0.80637 0.90723 1.86554 1.77129 1.42439 1.20319 1.24387 0.73555 0.85757 0.85730 1.90710 1.48755 1.18498 1.84423 1.20237 1.06310 0.96666 0.85299 1.19180 0.94451 1.02403 0.99813 1.20895 0.97951 0.93018 0.95296 1.20439 0.98235 1.04302 0.99590 1.19969 0.95194 0.89438 0.88845 1.83941 1.36671 1.50703 1.42483 1.21830 0.89929 1.18179 1.19093 0.88120 1.26627 1.02532 0.94699 0.98321 1.70191 1.28823 1.21874 1.34938 0.84572 0.75511 0.78078 0.77946 1.18516 1.19577 1.17811 1.21235 0.98133 1.02531 1.04446 1.20956 0.98484 0.94991 0.92834 1.19633 1.01910 0.94803 0.94022 1.21181 0.98682 0.93387 0.98859 1.21497 0.98618 1.01283 0.93025 1.21572 0.98685 0.94189 0.99298 1.21407 0.99493 0.95303 0.98192 1.21188 0.98812 1.00419 0.93594 0.89500 0.90287 0.92893 0.84173 0.84248 0.83422 0.86830 0.91811 0.86265 0.84045 0.84987 0.83719 0.83624 0.83921 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.53 71.98 0.69 -2.18 16 2 C 0.12 2.60 2.77 29.85 0.08 2.69 16 3 H 0.07 1.84 7.02 -2.39 -0.02 1.82 16 4 O -0.35 -7.67 9.20 -51.40 -0.47 -8.15 16 5 C 0.46 11.94 7.92 71.23 0.56 12.51 16 6 O -0.54 -18.63 15.25 21.96 0.33 -18.30 16 7 C -0.05 -1.01 5.94 29.10 0.17 -0.83 16 8 C -0.16 -4.94 4.38 -19.83 -0.09 -5.03 16 9 C -0.05 -1.86 9.69 22.25 0.22 -1.64 16 10 C -0.21 -9.15 9.99 22.39 0.22 -8.93 16 11 C 0.12 5.99 6.65 22.58 0.15 6.14 16 12 O -0.23 -14.34 9.76 -22.75 -0.22 -14.57 16 13 C -0.41 -24.73 9.49 67.92 0.64 -24.09 16 14 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 15 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 16 N -0.92 -57.51 13.67 21.61 0.30 -57.22 16 17 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 21 C -0.24 -11.01 9.17 22.39 0.21 -10.80 16 22 C -0.05 -1.93 9.69 22.25 0.22 -1.71 16 23 C -0.10 -1.89 4.98 -19.87 -0.10 -1.99 16 24 C -0.10 -1.63 9.36 22.27 0.21 -1.42 16 25 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 26 C -0.12 -1.39 10.05 22.27 0.22 -1.16 16 27 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 28 C -0.12 -2.01 9.67 22.27 0.22 -1.79 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.14 2.06 8.08 -2.39 -0.02 2.04 16 33 H 0.14 2.07 8.08 -2.39 -0.02 2.05 16 34 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 36 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 37 H 0.12 5.44 5.64 -2.91 -0.02 5.43 16 38 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.13 1.89 7.77 -2.91 -0.02 1.86 16 40 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.15 0.94 8.06 -2.92 -0.02 0.91 16 42 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.13 1.88 8.04 -2.91 -0.02 1.86 16 Total: -1.00 -78.69 374.52 7.52 -71.17 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 1.02 Total: 25.30 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 4.54 Total: -43.98 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.30 Total: -57.22 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.36 Total: -41.01 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -78.69 7.52 -71.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110175527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.764 kcal (2) G-P(sol) polarization free energy of solvation -78.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds